Wall clock time and date at job start Tue Mar 31 2020 13:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46984 * 2 1 4 4 N 1.46496 * 109.47177 * 239.99871 * 2 1 3 5 5 C 1.39674 * 120.00207 * 297.83888 * 4 2 1 6 6 C 1.39297 * 119.93896 * 352.22151 * 5 4 2 7 7 C 1.38695 * 120.40387 * 179.75949 * 6 5 4 8 8 F 1.35094 * 119.86732 * 180.27997 * 7 6 5 9 9 C 1.37925 * 120.26953 * 0.51316 * 7 6 5 10 10 C 1.40712 * 119.87001 * 359.74472 * 9 7 6 11 11 C 1.41409 * 120.19341 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99811 * 27.08242 * 11 10 9 13 13 C 1.39929 * 119.99872 * 207.08478 * 11 10 9 14 14 N 1.30828 * 119.99746 * 15.40494 * 13 11 10 15 15 Si 1.86794 * 119.99938 * 195.40922 * 13 11 10 16 16 H 1.48509 * 109.47343 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47471 * 119.99906 * 15 13 11 18 18 H 1.48502 * 109.47220 * 239.99612 * 15 13 11 19 19 C 1.38292 * 119.94332 * 172.49548 * 5 4 2 20 20 C 1.50701 * 109.47311 * 119.99821 * 2 1 3 21 21 C 1.38367 * 119.84626 * 319.31534 * 20 2 1 22 22 C 1.37939 * 120.15058 * 179.97438 * 21 20 2 23 23 C 1.39632 * 119.84982 * 0.02562 * 22 21 20 24 24 C 1.43197 * 120.15442 * 180.02562 * 23 22 21 25 25 N 6.84439 * 109.47130 * 119.99870 * 2 1 3 26 26 C 1.39640 * 119.69628 * 0.27630 * 23 22 21 27 27 C 1.37946 * 119.84351 * 359.46675 * 26 23 22 28 28 H 1.08998 * 109.46949 * 306.58338 * 1 2 3 29 29 H 1.09001 * 109.47083 * 66.58456 * 1 2 3 30 30 H 1.08996 * 109.47101 * 186.58905 * 1 2 3 31 31 H 1.09008 * 109.47023 * 184.24575 * 3 2 1 32 32 H 1.08997 * 109.47391 * 304.24000 * 3 2 1 33 33 H 1.08994 * 109.47727 * 64.24498 * 3 2 1 34 34 H 0.97006 * 120.00229 * 117.84356 * 4 2 1 35 35 H 1.08005 * 119.79298 * 0.02562 * 6 5 4 36 36 H 1.08000 * 120.06456 * 179.76121 * 9 7 6 37 37 H 0.96997 * 119.99712 * 180.02562 * 14 13 11 38 38 H 1.08004 * 120.13568 * 359.95378 * 19 5 4 39 39 H 1.08001 * 119.92200 * 359.97438 * 21 20 2 40 40 H 1.08003 * 120.07842 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.07490 * 179.70505 * 26 23 22 42 42 H 1.08003 * 119.92066 * 180.23827 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.7186 -2.0403 -1.3946 6 6 1.0970 -2.7703 -0.3841 7 6 0.7905 -4.1098 -0.5727 8 9 0.1826 -4.8060 0.4126 9 6 1.1082 -4.7351 -1.7602 10 6 1.7410 -4.0100 -2.7868 11 6 2.0692 -4.6442 -4.0073 12 1 1.4934 -5.4924 -4.3470 13 6 3.1401 -4.1728 -4.7748 14 7 4.0170 -3.3596 -4.2443 15 14 3.3174 -4.7045 -6.5567 16 1 2.2043 -5.6206 -6.9131 17 1 3.2761 -3.5090 -7.4365 18 1 4.6132 -5.4072 -6.7370 19 6 2.0445 -2.6510 -2.5918 20 6 2.0324 -0.7104 1.2305 21 6 1.4039 -0.5091 2.4466 22 6 1.8582 -1.1565 3.5768 23 6 2.9552 -2.0162 3.4917 24 6 3.4319 -2.6920 4.6606 25 7 3.8115 -3.2263 5.5885 26 6 3.5886 -2.2098 2.2623 27 6 3.1205 -1.5601 1.1391 28 1 -0.3633 0.6125 0.8252 29 1 -0.3633 0.4084 -0.9430 30 1 -0.3633 -1.0208 0.1179 31 1 3.1274 1.4435 -0.0761 32 1 1.6159 1.9778 -0.8495 33 1 1.7401 1.9340 0.9255 34 1 2.5499 -0.2106 -1.8503 35 1 0.8485 -2.2892 0.5504 36 1 0.8714 -5.7793 -1.9021 37 1 4.7591 -3.0326 -4.7765 38 1 2.5297 -2.0862 -3.3742 39 1 0.5558 0.1564 2.5111 40 1 1.3670 -0.9982 4.5256 41 1 4.4405 -2.8696 2.1904 42 1 3.6071 -1.7119 0.1869 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165792276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:59 Heat of formation + Delta-G solvation = 32.479236 kcal Electronic energy + Delta-G solvation = -27008.728382 eV Core-core repulsion = 23253.872241 eV Total energy + Delta-G solvation = -3754.856141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.69697 -40.29320 -38.00672 -36.67192 -35.76525 -33.61591 -32.01657 -30.89155 -30.27043 -29.30937 -27.48731 -26.94901 -25.37095 -24.09335 -22.54508 -21.09569 -20.93160 -19.69476 -18.79374 -17.64118 -16.31611 -16.09709 -15.41019 -15.12293 -14.95098 -14.66605 -14.60778 -14.34411 -14.09344 -13.93340 -13.82964 -13.60076 -13.45225 -13.14875 -12.72477 -12.61235 -12.48001 -12.16769 -12.09838 -11.87425 -11.79099 -11.61520 -11.32747 -11.20403 -11.10304 -10.90047 -10.78338 -10.56475 -10.42084 -10.12249 -9.66630 -9.41286 -8.90862 -8.80888 -8.46271 -7.33905 -6.87932 -6.39975 -4.49371 0.84583 1.47185 2.69642 2.70472 2.91524 3.01009 3.04193 3.09421 3.15924 3.88193 3.91328 3.95583 4.01963 4.52682 4.70198 4.91100 4.95629 5.07233 5.17579 5.43032 5.54171 5.56161 5.60843 5.68899 5.78056 5.81653 5.90074 5.96419 6.06060 6.08679 6.31202 6.34455 6.44809 6.49478 6.60560 6.68314 6.78735 6.93029 6.97947 7.14080 7.24076 7.50257 7.51299 7.68272 7.90809 7.99894 8.28763 8.49883 8.64709 8.82974 8.89389 10.11707 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.004000 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.269431 B = 6999.188671 C = 7633.000224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.219 3.781 3 C -0.148 4.148 4 N -0.748 5.748 5 C 0.236 3.764 6 C -0.326 4.326 7 C 0.138 3.862 8 F -0.169 7.169 9 C -0.287 4.287 10 C 0.158 3.842 11 C -0.459 4.459 12 H 0.079 0.921 13 C 0.079 3.921 14 N -0.790 5.790 15 Si 0.907 3.093 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.232 4.232 20 C -0.048 4.048 21 C -0.125 4.125 22 C -0.075 4.075 23 C -0.043 4.043 24 C 0.263 3.737 25 N -0.434 5.434 26 C -0.070 4.070 27 C -0.081 4.081 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.396 0.604 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.279 0.721 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 10.947 5.720 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.130 3.870 3 C -0.205 4.205 4 N -0.382 5.382 5 C 0.137 3.863 6 C -0.349 4.349 7 C 0.119 3.881 8 F -0.148 7.148 9 C -0.308 4.308 10 C 0.155 3.845 11 C -0.488 4.488 12 H 0.097 0.903 13 C -0.139 4.139 14 N -0.415 5.415 15 Si 0.731 3.269 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.200 1.200 19 C -0.256 4.256 20 C -0.051 4.051 21 C -0.143 4.143 22 C -0.095 4.095 23 C -0.046 4.046 24 C -0.051 4.051 25 N -0.109 5.109 26 C -0.090 4.090 27 C -0.099 4.099 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.231 0.769 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.561 10.234 7.300 12.668 hybrid contribution 0.148 -0.185 -1.233 1.256 sum -1.413 10.049 6.067 11.823 Atomic orbital electron populations 1.22416 0.94390 1.03735 1.01757 1.18911 0.93661 0.90908 0.83483 1.22009 1.01819 0.93960 1.02725 1.44567 1.61258 1.08753 1.23593 1.17186 0.93591 0.82405 0.93120 1.20104 1.19921 0.93673 1.01217 1.17294 0.95865 0.89827 0.85129 1.91330 1.81585 1.79759 1.62109 1.20886 1.16219 0.99460 0.94251 1.17052 0.86402 0.90312 0.90780 1.19590 1.12340 1.13611 1.03280 0.90275 1.25864 0.94520 0.93521 1.00016 1.69832 1.09255 1.25522 1.36870 0.86280 0.79112 0.79448 0.82026 1.18385 1.19734 1.20004 1.20759 1.13029 0.95463 0.96326 1.20509 0.94237 0.95531 0.94779 1.20876 1.00596 1.01216 0.91625 1.21000 0.94476 0.95050 0.98999 1.15985 0.99354 1.00981 0.88309 1.25831 0.93240 0.93139 0.92920 1.81208 1.08970 1.09697 1.11057 1.21178 0.99008 0.98132 0.90710 1.21134 0.95676 0.94525 0.98600 0.92409 0.91923 0.90573 0.91821 0.91588 0.91230 0.76940 0.87018 0.88275 0.91020 0.86144 0.85150 0.85480 0.85323 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 7.72 37.16 0.29 -1.71 16 2 C 0.22 2.68 0.90 -132.97 -0.12 2.56 16 3 C -0.15 -1.38 8.56 37.16 0.32 -1.06 16 4 N -0.75 -11.40 4.41 -47.12 -0.21 -11.61 16 5 C 0.24 4.64 5.09 -83.87 -0.43 4.22 16 6 C -0.33 -6.62 6.38 -39.02 -0.25 -6.87 16 7 C 0.14 3.15 7.28 -39.53 -0.29 2.86 16 8 F -0.17 -3.75 17.26 2.25 0.04 -3.72 16 9 C -0.29 -6.96 9.76 -38.76 -0.38 -7.34 16 10 C 0.16 3.95 5.55 -106.86 -0.59 3.36 16 11 C -0.46 -11.54 9.05 -37.74 -0.34 -11.88 16 12 H 0.08 1.95 7.89 -52.48 -0.41 1.53 16 13 C 0.08 1.86 5.17 -17.35 -0.09 1.77 16 14 N -0.79 -18.82 10.99 55.55 0.61 -18.21 16 15 Si 0.91 17.73 29.59 -169.99 -5.03 12.70 16 16 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 19 C -0.23 -5.34 8.51 -38.67 -0.33 -5.67 16 20 C -0.05 -0.62 2.50 -104.53 -0.26 -0.88 16 21 C -0.12 -1.37 9.05 -39.64 -0.36 -1.72 16 22 C -0.07 -0.83 9.76 -39.17 -0.38 -1.21 16 23 C -0.04 -0.55 5.73 -106.93 -0.61 -1.16 16 24 C 0.26 3.71 15.33 -22.47 -0.34 3.36 16 25 N -0.43 -6.88 18.54 41.84 0.78 -6.10 16 26 C -0.07 -0.95 9.76 -39.17 -0.38 -1.33 16 27 C -0.08 -1.17 7.29 -39.64 -0.29 -1.46 16 28 H 0.06 0.54 6.91 -51.93 -0.36 0.18 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.12 5.58 -51.93 -0.29 0.83 16 31 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 5.68 8.49 -40.82 -0.35 5.33 16 35 H 0.11 2.08 3.89 -52.48 -0.20 1.88 16 36 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16 37 H 0.28 6.05 8.30 -40.82 -0.34 5.71 16 38 H 0.12 2.86 6.26 -52.48 -0.33 2.53 16 39 H 0.13 1.12 6.68 -52.49 -0.35 0.77 16 40 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.14 2.29 6.47 -52.48 -0.34 1.95 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -26.81 352.69 -8.06 -34.87 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -4.73 Total: 10.91 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -4.84 Total: -24.16 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 1.18 Total: -35.92 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.04 Total: -3.72 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -26.81 -8.06 -34.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165792276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.348 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds