Wall clock time and date at job start Tue Mar 31 2020 13:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 C 1.50708 * 109.47057 * 240.00497 * 2 1 3 5 5 O 1.21279 * 119.99815 * 239.99727 * 4 2 1 6 6 N 1.34777 * 119.99787 * 59.99707 * 4 2 1 7 7 C 1.46497 * 119.99605 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.46867 * 179.97438 * 7 6 4 9 9 C 1.53008 * 109.46886 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.46836 * 180.02562 * 9 8 7 11 11 C 1.36936 * 119.99802 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99983 * 0.02562 * 11 10 9 13 13 C 1.38810 * 119.99929 * 179.97438 * 11 10 9 14 14 N 1.31619 * 120.00117 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 120.00026 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47428 * 90.00087 * 15 13 11 17 17 H 1.48510 * 109.47256 * 209.99769 * 15 13 11 18 18 H 1.48501 * 109.47400 * 329.99560 * 15 13 11 19 19 C 1.50693 * 109.47489 * 120.00241 * 2 1 3 20 20 C 1.38237 * 120.00782 * 239.99802 * 19 2 1 21 21 C 1.38224 * 120.01313 * 179.74160 * 20 19 2 22 22 C 1.38264 * 120.02429 * 0.28265 * 21 20 19 23 23 C 1.38190 * 120.01711 * 359.97438 * 22 21 20 24 24 C 1.38328 * 120.00847 * 60.27534 * 19 2 1 25 25 Cl 1.73603 * 120.01182 * 0.02562 * 24 19 2 26 26 H 1.09001 * 109.47121 * 299.99705 * 1 2 3 27 27 H 1.08995 * 109.46976 * 59.99538 * 1 2 3 28 28 H 1.08997 * 109.47006 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47316 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47664 * 300.00600 * 3 2 1 31 31 H 1.09006 * 109.46983 * 60.00678 * 3 2 1 32 32 H 0.96996 * 120.00055 * 0.02562 * 6 4 2 33 33 H 1.08995 * 109.47442 * 299.99847 * 7 6 4 34 34 H 1.08997 * 109.46988 * 60.00262 * 7 6 4 35 35 H 1.09001 * 109.47477 * 299.99974 * 8 7 6 36 36 H 1.08997 * 109.46971 * 60.00413 * 8 7 6 37 37 H 1.08995 * 109.47380 * 299.99983 * 9 8 7 38 38 H 1.08997 * 109.47030 * 60.00386 * 9 8 7 39 39 H 0.96998 * 119.99970 * 0.02562 * 10 9 8 40 40 H 0.96998 * 120.00600 * 179.97438 * 14 13 11 41 41 H 1.08002 * 119.99593 * 0.02778 * 20 19 2 42 42 H 1.07996 * 119.98814 * 180.25946 * 21 20 19 43 43 H 1.08004 * 119.98849 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.00864 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2498 -2.4546 7 6 2.1955 -0.9400 -3.6508 8 6 1.6848 -0.2191 -4.9000 9 6 2.1947 -0.9403 -6.1493 10 7 1.7062 -0.2497 -7.3454 11 6 2.0365 -0.7178 -8.5892 12 1 2.6568 -1.5963 -8.6884 13 6 1.5732 -0.0637 -9.7225 14 7 1.8903 -0.5139 -10.9180 15 14 0.4998 1.4553 -9.5510 16 1 1.3586 2.6660 -9.5066 17 1 -0.4214 1.5443 -10.7125 18 1 -0.2914 1.3635 -8.2977 19 6 2.0324 -0.7104 1.2303 20 6 2.8272 -0.0388 2.1404 21 6 3.2837 -0.6887 3.2716 22 6 2.9505 -2.0126 3.4908 23 6 2.1604 -2.6866 2.5792 24 6 1.7031 -2.0364 1.4465 25 17 0.7115 -2.8829 0.3002 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.1493 0.5391 -2.5435 33 1 3.2854 -0.9395 -3.6507 34 1 1.8325 -1.9677 -3.6510 35 1 0.5947 -0.2199 -4.8999 36 1 2.0473 0.8088 -4.9000 37 1 3.2847 -0.9399 -6.1497 38 1 1.8318 -1.9681 -6.1491 39 1 1.1488 0.5391 -7.2563 40 1 1.5663 -0.0571 -11.7100 41 1 3.0878 0.9954 1.9698 42 1 3.9012 -0.1624 3.9844 43 1 3.3078 -2.5200 4.3747 44 1 1.9006 -3.7209 2.7503 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171608698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:25 Heat of formation + Delta-G solvation = -8.056721 kcal Electronic energy + Delta-G solvation = -24787.441464 eV Core-core repulsion = 21151.855007 eV Total energy + Delta-G solvation = -3635.586457 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91828 -39.03564 -36.61021 -36.22819 -35.57379 -34.43887 -31.99719 -31.14605 -30.41666 -29.61971 -27.87747 -25.70620 -24.25938 -22.76915 -22.53564 -21.64493 -21.24245 -19.61813 -17.84601 -17.47305 -16.96702 -16.19627 -15.92285 -15.51726 -15.29278 -14.67103 -14.49278 -14.42800 -14.19871 -14.14086 -13.87590 -13.50025 -12.98903 -12.81392 -12.64903 -12.53058 -12.42593 -12.28682 -12.08073 -12.00311 -11.66131 -11.46955 -11.37033 -11.17876 -11.02770 -10.82481 -10.70382 -10.43338 -10.17152 -9.75204 -9.59785 -9.21906 -9.05578 -8.90958 -8.87400 -7.25012 -5.77332 -3.13451 0.86455 0.93614 1.99872 2.60630 3.02722 3.35623 3.37816 3.40956 3.43860 4.02009 4.30568 4.53288 4.57888 4.59262 4.65536 4.69678 4.92826 4.96920 5.08006 5.16857 5.21991 5.29054 5.31858 5.36602 5.43510 5.51195 5.53324 5.55916 5.65631 5.79333 5.84042 5.92703 5.93924 5.97789 6.04241 6.08948 6.15336 6.42485 6.46192 6.68750 6.71888 7.43864 7.98872 8.18255 8.41464 9.20181 9.92239 10.11836 11.41058 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.026470 B = 0.002335 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.538658 B =11988.298943 C =12312.472867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.043 4.043 3 C -0.144 4.144 4 C 0.523 3.477 5 O -0.523 6.523 6 N -0.726 5.726 7 C 0.124 3.876 8 C -0.141 4.141 9 C 0.161 3.839 10 N -0.757 5.757 11 C -0.245 4.245 12 H 0.091 0.909 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.887 3.113 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.278 1.278 19 C -0.054 4.054 20 C -0.105 4.105 21 C -0.120 4.120 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.004 4.004 25 Cl -0.055 7.055 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.398 0.602 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.360 0.640 40 H 0.260 0.740 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 2.787 34.021 34.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.047 4.047 3 C -0.201 4.201 4 C 0.307 3.693 5 O -0.398 6.398 6 N -0.378 5.378 7 C 0.001 3.999 8 C -0.180 4.180 9 C 0.033 3.967 10 N -0.403 5.403 11 C -0.375 4.375 12 H 0.108 0.892 13 C -0.193 4.193 14 N -0.582 5.582 15 Si 0.717 3.283 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.055 4.055 20 C -0.123 4.123 21 C -0.138 4.138 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.030 4.030 25 Cl -0.025 7.025 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.232 0.768 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.193 0.807 40 H 0.070 0.930 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.374 1.823 33.784 33.861 hybrid contribution -1.091 1.367 -0.254 1.767 sum -2.465 3.190 33.530 33.771 Atomic orbital electron populations 1.22187 0.91352 1.04779 1.02976 1.19718 0.97732 0.96171 0.91045 1.21970 1.01974 0.92905 1.03286 1.20131 0.80495 0.84497 0.84152 1.90741 1.37179 1.25416 1.86476 1.45981 1.53962 1.32194 1.05652 1.21314 0.99490 0.96446 0.82664 1.21992 1.01423 1.00293 0.94248 1.20496 0.96967 0.94869 0.84387 1.42689 1.62117 1.33209 1.02241 1.19074 1.26546 1.10265 0.81597 0.89153 1.24695 1.00516 0.99021 0.95081 1.69703 1.49774 1.41949 0.96763 0.86511 0.80772 0.84143 0.76855 1.21079 1.21703 1.20393 1.19198 0.98307 0.92318 0.95656 1.21122 0.96810 1.00535 0.93835 1.21196 1.00032 0.94948 0.97604 1.21110 0.97726 0.94757 0.99138 1.21045 0.98609 1.00466 0.93201 1.20710 0.97845 0.92438 0.92052 1.98359 1.67403 1.76893 1.59891 0.91293 0.91476 0.90308 0.91471 0.91315 0.90870 0.76787 0.91244 0.91267 0.91398 0.91381 0.95186 0.95244 0.80706 0.93037 0.84720 0.85430 0.85237 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.12 37.16 0.30 -0.93 16 2 C -0.04 -0.40 0.60 -156.81 -0.09 -0.49 16 3 C -0.14 -0.96 7.03 37.16 0.26 -0.69 16 4 C 0.52 6.38 5.38 -10.98 -0.06 6.32 16 5 O -0.52 -8.31 13.84 5.56 0.08 -8.23 16 6 N -0.73 -8.02 5.34 -60.30 -0.32 -8.34 16 7 C 0.12 1.63 5.67 -4.04 -0.02 1.61 16 8 C -0.14 -2.01 5.44 -26.73 -0.15 -2.15 16 9 C 0.16 3.07 6.26 -4.03 -0.03 3.05 16 10 N -0.76 -18.10 5.41 -59.90 -0.32 -18.43 16 11 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 12 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 13 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 14 N -0.93 -29.61 13.97 55.49 0.78 -28.84 16 15 Si 0.89 22.07 27.74 -169.99 -4.71 17.36 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 19 C -0.05 -0.54 4.38 -104.59 -0.46 -1.00 16 20 C -0.10 -0.86 8.97 -39.59 -0.36 -1.21 16 21 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 22 C -0.11 -0.82 10.05 -39.59 -0.40 -1.22 16 23 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 24 C 0.00 -0.04 5.46 -39.50 -0.22 -0.26 16 25 Cl -0.05 -0.65 22.79 -51.86 -1.18 -1.83 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 28 H 0.08 0.73 4.97 -51.93 -0.26 0.47 16 29 H 0.07 0.48 7.51 -51.93 -0.39 0.09 16 30 H 0.07 0.39 7.56 -51.93 -0.39 0.00 16 31 H 0.07 0.36 7.51 -51.93 -0.39 -0.03 16 32 H 0.40 3.40 7.31 -40.82 -0.30 3.10 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.36 8.28 5.53 -40.82 -0.23 8.05 16 40 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 41 H 0.14 0.81 5.90 -52.49 -0.31 0.50 16 42 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -34.87 364.44 -8.93 -43.79 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.48 Total: 5.92 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.25 Total: -6.90 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.13 Total: -55.60 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.23 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.18 Total: -1.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.87 -8.93 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171608698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.738 kcal (2) G-P(sol) polarization free energy of solvation -34.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds