Wall clock time and date at job start Tue Mar 31 2020 14:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47087 * 2 1 4 4 H 1.08996 * 109.47373 * 305.72447 * 3 2 1 5 5 C 1.50700 * 109.47048 * 65.72521 * 3 2 1 6 6 O 1.21278 * 120.00165 * 34.66769 * 5 3 2 7 7 N 1.34777 * 119.99727 * 214.66297 * 5 3 2 8 8 C 1.46501 * 120.00150 * 184.87141 * 7 5 3 9 9 C 1.52989 * 109.47502 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.47642 * 180.02562 * 9 8 7 11 11 N 1.46489 * 109.47377 * 180.02562 * 10 9 8 12 12 C 1.36943 * 120.00046 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99903 * 0.02562 * 12 11 10 14 14 C 1.38808 * 120.00104 * 179.97438 * 12 11 10 15 15 N 1.31613 * 120.00276 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99845 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46987 * 90.00246 * 16 14 12 18 18 H 1.48507 * 109.47194 * 209.99904 * 16 14 12 19 19 H 1.48500 * 109.47219 * 329.99893 * 16 14 12 20 20 C 1.50705 * 109.46932 * 185.72399 * 3 2 1 21 21 C 1.38238 * 119.98563 * 120.00059 * 20 3 2 22 22 C 1.38213 * 120.01332 * 180.02562 * 21 20 3 23 23 C 1.38355 * 119.98709 * 0.25012 * 22 21 20 24 24 Cl 1.73599 * 120.01547 * 179.69776 * 23 22 21 25 25 C 1.38354 * 119.96970 * 359.47522 * 23 22 21 26 26 C 1.38210 * 119.98600 * 0.54651 * 25 23 22 27 27 H 1.09010 * 109.46982 * 293.73426 * 1 2 3 28 28 H 1.08997 * 109.47343 * 53.72860 * 1 2 3 29 29 H 1.09001 * 109.47424 * 173.73430 * 1 2 3 30 30 H 1.08995 * 109.47025 * 240.00091 * 2 1 3 31 31 H 1.09000 * 109.47170 * 119.99703 * 2 1 3 32 32 H 0.97003 * 120.00276 * 4.88290 * 7 5 3 33 33 H 1.09003 * 109.46958 * 300.01018 * 8 7 5 34 34 H 1.09000 * 109.46651 * 60.00015 * 8 7 5 35 35 H 1.09003 * 109.47556 * 300.00298 * 9 8 7 36 36 H 1.09000 * 109.47444 * 60.00147 * 9 8 7 37 37 H 1.09003 * 109.46803 * 300.00655 * 10 9 8 38 38 H 1.09000 * 109.46665 * 59.99567 * 10 9 8 39 39 H 0.96999 * 120.00181 * 0.02562 * 11 10 9 40 40 H 0.97006 * 120.00221 * 180.02562 * 15 14 12 41 41 H 1.08004 * 119.99440 * 0.02562 * 21 20 3 42 42 H 1.08004 * 120.01013 * 179.97438 * 22 21 20 43 43 H 1.08006 * 120.00514 * 180.25026 * 25 23 22 44 44 H 1.08009 * 119.99355 * 179.72286 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9851 -0.8342 5 6 1.6567 2.1108 1.2952 6 8 1.6328 1.4698 2.3245 7 7 1.3405 3.4209 1.3097 8 6 1.0720 4.0956 2.5820 9 6 0.7398 5.5657 2.3196 10 6 0.4599 6.2706 3.6484 11 7 0.1412 7.6781 3.3970 12 6 -0.1471 8.5125 4.4440 13 1 -0.1391 8.1329 5.4550 14 6 -0.4485 9.8464 4.2058 15 7 -0.4577 10.3091 2.9738 16 14 -0.8411 10.9846 5.6340 17 1 0.4117 11.6130 6.1250 18 1 -1.7805 12.0417 5.1808 19 1 -1.4666 10.2040 6.7316 20 6 3.5403 1.4448 -0.1417 21 6 4.1316 2.0787 -1.2185 22 6 5.5075 2.0807 -1.3493 23 6 6.2929 1.4437 -0.4051 24 17 8.0207 1.4391 -0.5728 25 6 5.7008 0.8144 0.6755 26 6 4.3247 0.8127 0.8049 27 1 -0.3633 0.4137 0.9408 28 1 -0.3634 0.6079 -0.8285 29 1 -0.3634 -1.0215 -0.1122 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.2906 3.9170 0.4776 33 1 0.2278 3.6153 3.0769 34 1 1.9527 4.0301 3.2209 35 1 1.5837 6.0463 1.8246 36 1 -0.1411 5.6308 1.6809 37 1 -0.3839 5.7902 4.1439 38 1 1.3410 6.2055 4.2868 39 1 0.1337 8.0190 2.4889 40 1 -0.6680 11.2414 2.8073 41 1 3.5183 2.5725 -1.9578 42 1 5.9694 2.5756 -2.1909 43 1 6.3135 0.3204 1.4151 44 1 3.8622 0.3175 1.6460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176785913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:44 Heat of formation + Delta-G solvation = -31.717626 kcal Electronic energy + Delta-G solvation = -24047.232289 eV Core-core repulsion = 20410.619818 eV Total energy + Delta-G solvation = -3636.612470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67911 -39.15967 -36.90563 -36.16779 -34.94479 -34.36710 -32.02509 -31.47504 -31.25688 -29.65406 -27.32091 -25.21458 -23.40963 -23.00509 -22.48015 -21.77160 -21.21876 -19.85553 -17.72002 -17.40991 -16.93755 -16.23353 -15.98248 -15.56210 -15.36502 -14.73741 -14.64875 -14.45975 -14.05247 -13.90404 -13.68646 -13.51308 -13.28204 -13.01530 -12.87983 -12.68497 -12.39968 -11.98046 -11.87128 -11.69134 -11.53252 -11.29352 -11.22601 -11.09091 -10.97076 -10.93336 -10.79212 -10.63639 -10.11695 -9.93417 -9.71516 -9.41912 -9.08880 -8.91523 -8.89331 -6.95079 -5.78629 -3.07613 0.69116 0.91571 1.77776 2.50293 3.03355 3.28039 3.43162 3.48268 3.49990 4.22377 4.31696 4.50188 4.53878 4.57976 4.61410 4.83008 4.95863 4.98909 5.09059 5.17041 5.23443 5.28167 5.30420 5.44678 5.56147 5.57666 5.60370 5.69256 5.80065 5.84274 5.89535 5.94560 6.00608 6.03960 6.12492 6.17375 6.29940 6.38776 6.42447 6.76774 6.81094 7.41470 7.68907 8.11191 8.40385 9.51519 10.08442 10.43083 11.44417 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.002227 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.307008 B =12572.431263 C =14076.906411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C -0.068 4.068 4 H 0.098 0.902 5 C 0.521 3.479 6 O -0.536 6.536 7 N -0.725 5.725 8 C 0.122 3.878 9 C -0.137 4.137 10 C 0.157 3.843 11 N -0.734 5.734 12 C -0.240 4.240 13 H 0.071 0.929 14 C -0.015 4.015 15 N -0.935 5.935 16 Si 0.908 3.092 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.073 4.073 21 C -0.098 4.098 22 C -0.110 4.110 23 C -0.034 4.034 24 Cl -0.072 7.072 25 C -0.109 4.109 26 C -0.091 4.091 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.400 0.600 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.585 -23.588 -12.969 28.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.089 4.089 4 H 0.116 0.884 5 C 0.307 3.693 6 O -0.413 6.413 7 N -0.375 5.375 8 C -0.001 4.001 9 C -0.176 4.176 10 C 0.028 3.972 11 N -0.378 5.378 12 C -0.371 4.371 13 H 0.089 0.911 14 C -0.211 4.211 15 N -0.583 5.583 16 Si 0.739 3.261 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.074 4.074 21 C -0.116 4.116 22 C -0.129 4.129 23 C -0.060 4.060 24 Cl -0.044 7.044 25 C -0.127 4.127 26 C -0.109 4.109 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.234 0.766 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.691 -23.970 -12.042 28.877 hybrid contribution -0.032 1.217 0.005 1.217 sum 10.659 -22.754 -12.037 27.861 Atomic orbital electron populations 1.21822 0.95106 1.02135 1.02285 1.21451 0.96360 0.93110 1.03301 1.20400 0.92548 0.98943 0.97013 0.88367 1.20318 0.76586 0.81969 0.90462 1.90690 1.52424 1.63794 1.34415 1.46124 1.70682 1.10002 1.10726 1.21369 1.01397 0.92480 0.84903 1.21942 1.02126 0.93026 1.00473 1.20515 0.97387 0.86237 0.93019 1.42336 1.84131 1.04065 1.07275 1.19245 1.39087 0.90558 0.88219 0.91096 1.24753 1.02665 0.97168 0.96482 1.69657 1.55862 1.14790 1.18037 0.86167 0.77761 0.80679 0.81462 1.21668 1.21733 1.20705 1.19545 0.93841 0.98488 0.95493 1.21038 0.94052 0.98795 0.97706 1.21038 0.93413 0.99508 0.98906 1.21000 0.84719 1.02394 0.97931 1.98379 1.10941 1.97481 1.97555 1.21082 0.95046 0.99609 0.96994 1.21149 0.92603 0.98237 0.98896 0.92183 0.92660 0.92201 0.90985 0.90256 0.76551 0.91263 0.91449 0.91319 0.91282 0.96068 0.96091 0.78306 0.93493 0.84745 0.84715 0.84780 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.63 37.16 0.36 -0.86 16 2 C -0.10 -0.81 4.89 -26.73 -0.13 -0.94 16 3 C -0.07 -0.55 2.37 -92.92 -0.22 -0.77 16 4 H 0.10 0.58 7.83 -51.93 -0.41 0.17 16 5 C 0.52 5.95 5.65 -10.98 -0.06 5.89 16 6 O -0.54 -7.94 15.47 5.56 0.09 -7.85 16 7 N -0.72 -7.93 5.55 -60.30 -0.33 -8.26 16 8 C 0.12 1.62 5.68 -4.05 -0.02 1.60 16 9 C -0.14 -2.07 5.44 -26.73 -0.15 -2.21 16 10 C 0.16 3.11 6.26 -4.05 -0.03 3.09 16 11 N -0.73 -18.66 5.60 -59.91 -0.34 -19.00 16 12 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 13 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 14 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 15 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 16 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.07 -0.62 4.77 -104.62 -0.50 -1.12 16 21 C -0.10 -0.72 9.67 -39.59 -0.38 -1.10 16 22 C -0.11 -0.87 9.83 -39.55 -0.39 -1.25 16 23 C -0.03 -0.30 6.32 -39.50 -0.25 -0.55 16 24 Cl -0.07 -0.62 28.96 -51.86 -1.50 -2.13 16 25 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 26 C -0.09 -0.84 8.86 -39.59 -0.35 -1.19 16 27 H 0.06 0.59 7.46 -51.92 -0.39 0.20 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.72 7.11 -51.93 -0.37 0.35 16 32 H 0.40 3.42 8.44 -40.82 -0.34 3.08 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.13 0.67 7.95 -52.48 -0.42 0.25 16 42 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 44 H 0.14 1.35 7.17 -52.48 -0.38 0.97 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -32.82 383.36 -10.17 -42.99 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.81 Total: 6.82 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.75 Total: -8.24 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.05 Total: -54.84 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.09 Total: -7.85 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.82 -10.17 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176785913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.276 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds