Wall clock time and date at job start Tue Mar 31 2020 14:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47082 * 2 1 4 4 C 1.53002 * 109.47082 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47149 * 180.02562 * 4 3 2 6 6 C 1.46495 * 119.99782 * 269.99910 * 5 4 3 7 7 C 1.50706 * 109.47325 * 269.99805 * 6 5 4 8 8 H 1.07998 * 119.99874 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99701 * 179.97438 * 7 6 5 10 10 N 1.31505 * 120.00211 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99476 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47179 * 90.00074 * 11 9 7 13 13 H 1.48504 * 109.46922 * 210.00302 * 11 9 7 14 14 H 1.48500 * 109.47076 * 330.00485 * 11 9 7 15 15 C 1.34778 * 119.99857 * 90.00424 * 5 4 3 16 16 O 1.21585 * 119.99956 * 180.02562 * 15 5 4 17 17 N 1.34775 * 119.99818 * 359.97438 * 15 5 4 18 18 C 1.39945 * 119.99922 * 185.61317 * 17 15 5 19 19 C 1.38901 * 120.05991 * 24.81942 * 18 17 15 20 20 C 1.38098 * 119.95445 * 179.97438 * 19 18 17 21 21 C 1.38284 * 120.08193 * 359.72593 * 20 19 18 22 22 C 1.38371 * 120.12799 * 0.55033 * 21 20 19 23 23 Cl 1.73597 * 119.98067 * 179.72877 * 22 21 20 24 24 C 1.38256 * 120.04262 * 359.44782 * 22 21 20 25 25 C 1.50701 * 120.04079 * 180.25375 * 24 22 21 26 26 H 1.09002 * 109.47288 * 299.99778 * 1 2 3 27 27 H 1.09003 * 109.47462 * 59.99869 * 1 2 3 28 28 H 1.09000 * 109.47551 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46568 * 240.00131 * 2 1 3 30 30 H 1.08997 * 109.46916 * 120.00541 * 2 1 3 31 31 H 1.08998 * 109.46958 * 60.00476 * 3 2 1 32 32 H 1.08997 * 109.47687 * 300.00069 * 3 2 1 33 33 H 1.09002 * 109.47288 * 60.00221 * 4 3 2 34 34 H 1.08997 * 109.46916 * 300.00541 * 4 3 2 35 35 H 1.09001 * 109.47046 * 30.00315 * 6 5 4 36 36 H 1.09009 * 109.47040 * 150.00131 * 6 5 4 37 37 H 0.97005 * 119.99950 * 179.97438 * 10 9 7 38 38 H 0.96995 * 120.00432 * 5.61355 * 17 15 5 39 39 H 1.07998 * 120.02201 * 359.97438 * 19 18 17 40 40 H 1.08009 * 119.95547 * 179.97438 * 20 19 18 41 41 H 1.08008 * 119.93297 * 180.27926 * 21 20 19 42 42 H 1.08998 * 109.47001 * 90.00436 * 25 24 22 43 43 H 1.08997 * 109.46776 * 209.99884 * 25 24 22 44 44 H 1.08990 * 109.47132 * 330.00187 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.3031 3.5146 -1.2671 7 6 5.7266 3.2780 -1.7017 8 1 6.3832 2.6730 -1.0940 9 6 6.1903 3.8329 -2.8756 10 7 5.3906 4.5691 -3.6158 11 14 7.9546 3.5390 -3.4145 12 1 8.0178 2.3180 -4.2574 13 1 8.4340 4.7063 -4.1972 14 1 8.8144 3.3589 -2.2172 15 6 4.2826 3.4586 1.1688 16 8 4.6874 4.6051 1.1693 17 7 4.0570 2.8230 2.3356 18 6 4.1764 3.5171 3.5450 19 6 4.0127 4.8961 3.5748 20 6 4.1304 5.5788 4.7695 21 6 4.4055 4.8905 5.9369 22 6 4.5749 3.5175 5.9102 23 17 4.9271 2.6582 7.3769 24 6 4.4581 2.8288 4.7171 25 6 4.6370 1.3327 4.6890 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9338 0.9285 -0.8891 34 1 3.9329 0.9287 0.8908 35 1 3.6225 3.1307 -2.0272 36 1 4.1360 4.5839 -1.1366 37 1 5.7170 4.9598 -4.4415 38 1 3.8120 1.8846 2.3373 39 1 3.7934 5.4341 2.6644 40 1 4.0035 6.6511 4.7926 41 1 4.4926 5.4263 6.8706 42 1 3.6741 0.8485 4.8519 43 1 5.0351 1.0325 3.7198 44 1 5.3309 1.0349 5.4749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184667652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:34 Heat of formation + Delta-G solvation = -20.148217 kcal Electronic energy + Delta-G solvation = -25436.647744 eV Core-core repulsion = 21800.536960 eV Total energy + Delta-G solvation = -3636.110783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.56911 -38.79249 -36.61478 -36.10444 -34.63473 -34.00974 -32.61641 -32.34435 -29.55611 -28.98186 -27.19199 -26.57806 -23.68114 -23.47973 -22.20847 -21.33170 -21.08256 -19.41209 -18.09203 -17.05728 -16.47515 -15.96157 -15.61847 -15.24341 -14.90065 -14.81146 -14.39329 -14.23682 -13.94203 -13.61173 -13.43153 -13.31900 -12.84006 -12.57583 -12.48690 -12.39424 -12.33093 -11.77735 -11.61668 -11.51251 -11.38616 -11.27046 -11.14300 -11.03352 -10.89545 -10.82075 -10.58836 -10.49158 -10.19602 -10.14183 -9.65272 -9.30106 -8.57492 -8.46378 -8.01007 -7.63524 -6.07456 -4.12141 1.25955 1.33696 2.06965 3.10446 3.28347 3.35566 3.40436 3.52033 3.95626 4.24360 4.44434 4.74326 4.88497 4.95416 5.01993 5.08635 5.14343 5.26913 5.28821 5.40370 5.49805 5.49938 5.59352 5.65540 5.70005 5.72573 5.81550 5.85731 6.00051 6.01966 6.15597 6.22412 6.29345 6.32142 6.44040 6.46688 6.62941 6.76434 7.11997 7.28739 7.43375 7.59033 7.89762 8.18745 8.47191 8.87832 9.12700 9.53330 11.00403 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.003809 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.780203 B = 7349.145788 C = 8976.771676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.111 3.889 5 N -0.603 5.603 6 C 0.261 3.739 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.698 3.302 16 O -0.564 6.564 17 N -0.689 5.689 18 C 0.199 3.801 19 C -0.125 4.125 20 C -0.090 4.090 21 C -0.140 4.140 22 C -0.014 4.014 23 Cl -0.077 7.077 24 C -0.125 4.125 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.035 0.965 36 H 0.045 0.955 37 H 0.264 0.736 38 H 0.403 0.597 39 H 0.157 0.843 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 -7.679 16.248 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.179 4.179 4 C -0.013 4.013 5 N -0.337 5.337 6 C 0.142 3.858 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.400 3.600 16 O -0.440 6.440 17 N -0.337 5.337 18 C 0.101 3.899 19 C -0.146 4.146 20 C -0.109 4.109 21 C -0.160 4.160 22 C -0.041 4.041 23 Cl -0.048 7.048 24 C -0.129 4.129 25 C -0.172 4.172 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.241 0.759 39 H 0.174 0.826 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.354 -6.832 16.014 18.900 hybrid contribution 0.969 -0.720 -0.274 1.238 sum -6.385 -7.552 15.740 18.589 Atomic orbital electron populations 1.21758 0.95972 1.01255 1.01869 1.21465 0.95815 0.96671 1.02031 1.22110 0.96128 0.96751 1.02912 1.21462 0.93185 0.84214 1.02474 1.47633 1.66484 1.13360 1.06222 1.19257 0.96298 0.93480 0.76787 1.21440 0.96949 1.32011 1.06291 0.92501 1.24906 0.97819 0.94859 0.96358 1.69921 1.35696 1.33339 1.14337 0.86510 0.84718 0.77689 0.78591 1.20650 1.21058 1.19925 1.15928 0.79072 0.84961 0.80046 1.90861 1.51137 1.16631 1.85362 1.43061 1.72752 1.14184 1.03721 1.17257 0.96939 0.91659 0.84075 1.21695 1.00054 0.92972 0.99891 1.20994 0.98635 1.00031 0.91278 1.20898 1.03928 0.91867 0.99327 1.20372 1.05068 0.92253 0.86429 1.98334 1.93487 1.77614 1.35347 1.19272 1.05727 0.96780 0.91104 1.20752 1.02561 0.90639 1.03294 0.92952 0.92638 0.92992 0.91635 0.92223 0.92265 0.90938 0.89356 0.92622 0.94684 0.93665 0.92684 0.75945 0.82557 0.85015 0.85371 0.90970 0.91505 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.22 5.93 -26.73 -0.16 -1.38 16 3 C -0.14 -1.79 5.54 -26.73 -0.15 -1.93 16 4 C 0.11 1.67 5.22 -4.04 -0.02 1.65 16 5 N -0.60 -12.16 2.46 -180.80 -0.44 -12.61 16 6 C 0.26 6.56 5.16 -5.19 -0.03 6.53 16 7 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 11 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.70 14.25 8.08 -86.92 -0.70 13.54 16 16 O -0.56 -13.74 13.08 5.29 0.07 -13.67 16 17 N -0.69 -10.89 4.85 -14.23 -0.07 -10.96 16 18 C 0.20 3.08 6.41 -83.69 -0.54 2.54 16 19 C -0.13 -2.01 8.72 -39.39 -0.34 -2.35 16 20 C -0.09 -1.18 10.04 -39.62 -0.40 -1.58 16 21 C -0.14 -1.70 9.83 -39.52 -0.39 -2.09 16 22 C -0.01 -0.18 6.31 -39.53 -0.25 -0.43 16 23 Cl -0.08 -0.84 27.29 -51.86 -1.42 -2.26 16 24 C -0.12 -1.66 5.90 -104.40 -0.62 -2.27 16 25 C -0.12 -1.23 9.05 36.01 0.33 -0.91 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 34 H 0.06 0.69 6.29 -51.93 -0.33 0.37 16 35 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.05 1.29 7.42 -51.92 -0.39 0.90 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.40 5.18 5.10 -40.82 -0.21 4.97 16 39 H 0.16 2.88 5.78 -52.49 -0.30 2.57 16 40 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 41 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.71 6.99 -51.93 -0.36 0.34 16 44 H 0.08 0.77 6.90 -51.93 -0.36 0.41 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -31.39 374.77 -10.37 -41.75 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.56 Total: 3.75 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -3.31 Total: -2.99 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.22 Total: -48.87 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.07 Total: -13.67 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.42 Total: -2.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.39 -10.37 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184667652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.606 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds