Wall clock time and date at job start Tue Mar 31 2020 13:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47260 * 2 1 4 4 N 1.30854 * 126.23764 * 269.99784 * 3 2 1 5 5 N 1.28667 * 110.26259 * 179.97438 * 4 3 2 6 6 C 1.32399 * 109.46808 * 0.02562 * 5 4 3 7 7 C 1.40829 * 133.35405 * 179.97438 * 6 5 4 8 8 C 1.35913 * 119.36089 * 180.02562 * 7 6 5 9 9 C 1.41037 * 119.71551 * 359.97438 * 8 7 6 10 10 N 1.40058 * 119.90026 * 180.02562 * 9 8 7 11 11 C 1.39752 * 119.99529 * 42.00376 * 10 9 8 12 12 C 1.38786 * 120.11255 * 7.60426 * 11 10 9 13 13 C 1.38175 * 119.99204 * 179.97438 * 12 11 10 14 14 C 1.38361 * 120.21032 * 359.97438 * 13 12 11 15 15 C 1.38184 * 120.21309 * 0.02569 * 14 13 12 16 16 C 1.38724 * 120.00404 * 359.69365 * 15 14 13 17 17 O 1.35786 * 120.10082 * 180.29988 * 16 15 14 18 18 C 1.34806 * 117.00020 * 5.63334 * 17 16 15 19 19 H 1.07998 * 120.00000 * 354.88375 * 18 17 16 20 20 C 1.38617 * 119.99912 * 174.89557 * 18 17 16 21 21 N 1.31577 * 119.99992 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99865 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47521 * 119.99681 * 22 20 18 25 25 H 1.48506 * 109.46652 * 239.99468 * 22 20 18 26 26 C 1.35600 * 120.20261 * 0.21678 * 9 8 7 27 27 N 1.36019 * 126.24721 * 89.99260 * 3 2 1 28 28 H 1.08998 * 109.46690 * 60.00524 * 1 2 3 29 29 H 1.08992 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47536 * 300.00837 * 1 2 3 31 31 H 1.08995 * 109.47536 * 239.99162 * 2 1 3 32 32 H 1.09009 * 109.47133 * 119.99375 * 2 1 3 33 33 H 1.08002 * 120.32260 * 0.02562 * 7 6 5 34 34 H 1.08001 * 120.14583 * 179.97438 * 8 7 6 35 35 H 0.96999 * 119.99834 * 222.00599 * 10 9 8 36 36 H 1.07997 * 119.99995 * 359.95042 * 12 11 10 37 37 H 1.08000 * 119.89799 * 179.97438 * 13 12 11 38 38 H 1.07992 * 119.89387 * 179.97438 * 14 13 12 39 39 H 1.07995 * 119.99306 * 179.97438 * 15 14 13 40 40 H 0.97005 * 120.00273 * 180.02562 * 21 20 18 41 41 H 1.08004 * 119.79977 * 179.68125 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2903 2.1501 -1.0554 5 7 2.7021 3.3165 -0.7013 6 6 2.7291 3.3925 0.6202 7 6 3.0895 4.4117 1.5228 8 6 3.0076 4.1779 2.8592 9 6 2.5637 2.9223 3.3234 10 7 2.4773 2.6774 4.6997 11 6 1.9652 3.6585 5.5531 12 6 1.3970 4.8106 5.0278 13 6 0.8909 5.7788 5.8739 14 6 0.9479 5.6039 7.2452 15 6 1.5118 4.4601 7.7774 16 6 2.0173 3.4797 6.9361 17 8 2.5663 2.3522 7.4569 18 6 2.4849 2.1927 8.7930 19 1 2.0736 2.9804 9.4068 20 6 2.9292 1.0176 9.3790 21 7 3.4299 0.0579 8.6311 22 14 2.8170 0.7968 11.2305 23 1 2.2211 2.0134 11.8389 24 1 1.9643 -0.3793 11.5381 25 1 4.1771 0.5811 11.7865 26 6 2.2240 1.9501 2.4413 27 7 2.3003 2.1791 1.0970 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 3.4278 5.3698 1.1567 34 1 3.2812 4.9504 3.5627 35 1 2.7729 1.8269 5.0604 36 1 1.3507 4.9505 3.9579 37 1 0.4494 6.6750 5.4635 38 1 0.5512 6.3640 7.9017 39 1 1.5548 4.3274 8.8483 40 1 3.7405 -0.7646 9.0411 41 1 1.8899 0.9892 2.8039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212599559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:11 Heat of formation + Delta-G solvation = 113.417419 kcal Electronic energy + Delta-G solvation = -26247.538244 eV Core-core repulsion = 22516.111807 eV Total energy + Delta-G solvation = -3731.426437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.46280 -39.86261 -38.44491 -36.58906 -35.05254 -34.82950 -32.87028 -32.40552 -30.44146 -29.51840 -28.86583 -27.49977 -25.55929 -24.47207 -24.09050 -23.10222 -21.64208 -21.54065 -20.79847 -18.30262 -18.12809 -17.73200 -17.11758 -16.58723 -16.41906 -15.74195 -15.12413 -14.85376 -14.76200 -14.33157 -14.14850 -14.08593 -13.95828 -13.52564 -13.34912 -12.93657 -12.72407 -12.47055 -12.31689 -11.86556 -11.82983 -11.70121 -11.62519 -11.43791 -11.22579 -11.12079 -11.05308 -10.78472 -10.55356 -10.48985 -10.41366 -9.60285 -9.14420 -8.96422 -8.10089 -7.78837 -6.78767 -6.59778 -4.16382 0.60428 1.09808 2.03140 2.18846 2.27629 2.73498 3.03025 3.05272 3.10375 3.31456 3.50862 3.84191 4.04556 4.35255 4.39973 4.54867 4.63638 4.71698 4.89359 4.99921 5.00557 5.03189 5.12495 5.23556 5.44893 5.57154 5.59289 5.65833 5.74560 5.84377 5.87488 5.92555 5.97489 6.02666 6.06969 6.19905 6.37442 6.50661 6.67720 6.85581 6.97176 7.09989 7.24406 7.41213 7.70387 7.84251 7.92229 8.57974 8.87031 9.51031 10.58081 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.003284 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.031390 B = 8525.428362 C = 9804.343861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.031 4.031 3 C 0.137 3.863 4 N -0.256 5.256 5 N -0.292 5.292 6 C 0.176 3.824 7 C -0.066 4.066 8 C -0.100 4.100 9 C 0.187 3.813 10 N -0.665 5.665 11 C 0.116 3.884 12 C -0.144 4.144 13 C -0.173 4.173 14 C -0.104 4.104 15 C -0.205 4.205 16 C 0.116 3.884 17 O -0.183 6.183 18 C -0.387 4.387 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.019 4.019 27 N -0.361 5.361 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.423 0.577 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.270 0.730 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 3.414 -8.982 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.071 4.071 3 C -0.125 4.125 4 N -0.098 5.098 5 N -0.140 5.140 6 C -0.074 4.074 7 C -0.087 4.087 8 C -0.126 4.126 9 C 0.084 3.916 10 N -0.291 5.291 11 C 0.019 3.981 12 C -0.165 4.165 13 C -0.192 4.192 14 C -0.124 4.124 15 C -0.225 4.225 16 C 0.061 3.939 17 O -0.087 6.087 18 C -0.464 4.464 19 H 0.110 0.890 20 C -0.164 4.164 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.147 4.147 27 N -0.039 5.039 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.262 0.738 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.149 0.851 40 H 0.080 0.920 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.195 3.395 -10.630 11.607 hybrid contribution -0.023 -0.777 2.602 2.715 sum -3.218 2.618 -8.028 9.037 Atomic orbital electron populations 1.21769 0.93630 1.02580 1.02726 1.19949 0.96613 0.85997 1.04531 1.24728 1.08700 0.98167 0.80940 1.74158 1.13456 0.98743 1.23438 1.74907 1.20768 1.12249 1.06058 1.22224 1.04823 0.87559 0.92756 1.20087 1.00618 0.97737 0.90295 1.21447 0.97972 0.97573 0.95589 1.16898 0.96601 0.93279 0.84860 1.41763 1.67444 1.18930 1.00948 1.16924 1.03050 0.91636 0.86479 1.20516 1.03051 0.93916 0.99060 1.20433 1.05930 0.99635 0.93221 1.20721 0.99854 0.97021 0.94756 1.21003 1.06058 0.95135 1.00292 1.18877 0.95547 0.89423 0.90022 1.83859 1.66389 1.33631 1.24862 1.21319 1.43309 1.02805 0.78920 0.88976 1.25243 0.96287 0.94373 1.00490 1.70014 1.38215 1.05966 1.35781 0.85648 0.78410 0.78871 0.80544 1.19075 1.20138 1.20141 1.20992 1.10402 1.03750 0.79524 1.43211 1.41842 1.12490 1.06377 0.91824 0.91229 0.92578 0.88221 0.89930 0.82301 0.82684 0.73815 0.86287 0.87212 0.87306 0.85114 0.92031 0.81548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.16 0.37 -0.95 16 2 C -0.03 -0.31 6.46 -27.88 -0.18 -0.49 16 3 C 0.14 1.90 7.39 -154.22 -1.14 0.76 16 4 N -0.26 -4.17 12.19 32.94 0.40 -3.77 16 5 N -0.29 -4.92 12.31 31.14 0.38 -4.54 16 6 C 0.18 2.64 7.91 -156.07 -1.23 1.40 16 7 C -0.07 -0.80 10.10 -39.44 -0.40 -1.20 16 8 C -0.10 -1.26 7.37 -39.35 -0.29 -1.55 16 9 C 0.19 2.63 5.81 -83.98 -0.49 2.14 16 10 N -0.67 -10.96 5.46 -8.45 -0.05 -11.01 16 11 C 0.12 2.11 6.46 -83.55 -0.54 1.58 16 12 C -0.14 -2.29 8.05 -39.40 -0.32 -2.61 16 13 C -0.17 -2.66 10.04 -39.56 -0.40 -3.06 16 14 C -0.10 -1.72 10.04 -39.56 -0.40 -2.12 16 15 C -0.20 -4.01 9.16 -39.42 -0.36 -4.37 16 16 C 0.12 2.47 6.67 -38.91 -0.26 2.21 16 17 O -0.18 -4.59 9.02 0.01 0.00 -4.59 16 18 C -0.39 -9.90 9.49 30.87 0.29 -9.61 16 19 H 0.09 2.20 5.21 -52.49 -0.27 1.92 16 20 C 0.04 1.02 5.49 -17.52 -0.10 0.93 16 21 N -0.86 -23.36 13.67 55.48 0.76 -22.60 16 22 Si 0.94 19.29 29.55 -169.99 -5.02 14.27 16 23 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 26 C -0.02 -0.26 10.82 -16.38 -0.18 -0.43 16 27 N -0.36 -5.12 2.95 -59.51 -0.18 -5.30 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.16 1.83 6.73 -52.49 -0.35 1.48 16 35 H 0.42 7.45 8.22 -40.82 -0.34 7.11 16 36 H 0.12 1.67 5.36 -52.49 -0.28 1.39 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.13 2.58 5.64 -52.49 -0.30 2.28 16 40 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 41 H 0.17 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -30.03 350.02 -8.52 -38.56 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.48 Total: 11.06 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -5.61 Total: -17.35 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 1.32 Total: -47.21 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: 0.00 Total: -4.59 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.03 -8.52 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212599559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.973 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds