Wall clock time and date at job start Tue Mar 31 2020 13:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47260 * 2 1 4 4 N 1.30854 * 126.23764 * 269.99784 * 3 2 1 5 5 N 1.28667 * 110.26259 * 179.97438 * 4 3 2 6 6 C 1.32399 * 109.46808 * 0.02562 * 5 4 3 7 7 C 1.40829 * 133.35405 * 179.97438 * 6 5 4 8 8 C 1.35913 * 119.36089 * 180.02562 * 7 6 5 9 9 C 1.41037 * 119.71551 * 359.97438 * 8 7 6 10 10 N 1.40058 * 119.90026 * 180.02562 * 9 8 7 11 11 C 1.39752 * 119.99529 * 42.00376 * 10 9 8 12 12 C 1.38786 * 120.11255 * 7.60426 * 11 10 9 13 13 C 1.38175 * 119.99204 * 179.97438 * 12 11 10 14 14 C 1.38361 * 120.21032 * 359.97438 * 13 12 11 15 15 C 1.38184 * 120.21309 * 0.02569 * 14 13 12 16 16 C 1.38724 * 120.00404 * 359.69365 * 15 14 13 17 17 O 1.35786 * 120.10082 * 180.29988 * 16 15 14 18 18 C 1.34806 * 117.00020 * 5.63334 * 17 16 15 19 19 H 1.07998 * 120.00000 * 354.88375 * 18 17 16 20 20 C 1.38617 * 119.99912 * 174.89557 * 18 17 16 21 21 N 1.31577 * 119.99992 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99865 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47521 * 119.99681 * 22 20 18 25 25 H 1.48506 * 109.46652 * 239.99468 * 22 20 18 26 26 C 1.35600 * 120.20261 * 0.21678 * 9 8 7 27 27 N 1.36019 * 126.24721 * 89.99260 * 3 2 1 28 28 H 1.08998 * 109.46690 * 60.00524 * 1 2 3 29 29 H 1.08992 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47536 * 300.00837 * 1 2 3 31 31 H 1.08995 * 109.47536 * 239.99162 * 2 1 3 32 32 H 1.09009 * 109.47133 * 119.99375 * 2 1 3 33 33 H 1.08002 * 120.32260 * 0.02562 * 7 6 5 34 34 H 1.08001 * 120.14583 * 179.97438 * 8 7 6 35 35 H 0.96999 * 119.99834 * 222.00599 * 10 9 8 36 36 H 1.07997 * 119.99995 * 359.95042 * 12 11 10 37 37 H 1.08000 * 119.89799 * 179.97438 * 13 12 11 38 38 H 1.07992 * 119.89387 * 179.97438 * 14 13 12 39 39 H 1.07995 * 119.99306 * 179.97438 * 15 14 13 40 40 H 0.97005 * 120.00273 * 180.02562 * 21 20 18 41 41 H 1.08004 * 119.79977 * 179.68125 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2903 2.1501 -1.0554 5 7 2.7021 3.3165 -0.7013 6 6 2.7291 3.3925 0.6202 7 6 3.0895 4.4117 1.5228 8 6 3.0076 4.1779 2.8592 9 6 2.5637 2.9223 3.3234 10 7 2.4773 2.6774 4.6997 11 6 1.9652 3.6585 5.5531 12 6 1.3970 4.8106 5.0278 13 6 0.8909 5.7788 5.8739 14 6 0.9479 5.6039 7.2452 15 6 1.5118 4.4601 7.7774 16 6 2.0173 3.4797 6.9361 17 8 2.5663 2.3522 7.4569 18 6 2.4849 2.1927 8.7930 19 1 2.0736 2.9804 9.4068 20 6 2.9292 1.0176 9.3790 21 7 3.4299 0.0579 8.6311 22 14 2.8170 0.7968 11.2305 23 1 2.2211 2.0134 11.8389 24 1 1.9643 -0.3793 11.5381 25 1 4.1771 0.5811 11.7865 26 6 2.2240 1.9501 2.4413 27 7 2.3003 2.1791 1.0970 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 3.4278 5.3698 1.1567 34 1 3.2812 4.9504 3.5627 35 1 2.7729 1.8269 5.0604 36 1 1.3507 4.9505 3.9579 37 1 0.4494 6.6750 5.4635 38 1 0.5512 6.3640 7.9017 39 1 1.5548 4.3274 8.8483 40 1 3.7405 -0.7646 9.0411 41 1 1.8899 0.9892 2.8039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212599559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:10 Heat of formation + Delta-G solvation = 97.985010 kcal Electronic energy + Delta-G solvation = -26248.207443 eV Core-core repulsion = 22516.111807 eV Total energy + Delta-G solvation = -3732.095636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.58322 -41.23015 -39.75599 -38.06572 -36.28683 -35.81222 -34.24828 -33.78267 -31.67664 -30.86052 -30.04011 -28.77401 -27.31491 -25.46894 -25.15105 -24.23833 -23.05398 -22.81816 -21.90159 -19.80820 -19.53899 -18.95373 -18.43735 -17.70721 -17.57508 -17.18070 -16.31870 -16.13127 -15.96032 -15.64646 -15.54252 -15.43037 -14.95490 -14.90116 -14.49885 -14.21901 -13.96569 -13.58666 -13.50819 -13.33528 -13.20612 -12.76782 -12.70644 -12.57114 -12.50925 -12.32875 -12.22311 -12.12685 -12.04901 -11.67264 -11.55957 -11.26482 -10.78110 -10.33345 -9.32643 -9.12366 -8.44321 -8.17044 -6.06556 -0.44528 -0.01939 0.64515 0.81159 1.17359 1.38012 1.43798 1.53516 1.60170 2.16462 2.21825 2.30426 2.88868 3.01019 3.20141 3.38621 3.42920 3.51036 3.64673 3.71482 4.04183 4.12962 4.18849 4.24224 4.33909 4.44538 4.54415 4.60119 4.70686 4.77246 4.91052 4.91331 4.92346 4.96265 5.06195 5.10551 5.14332 5.22051 5.27006 5.44667 5.62617 5.77548 5.83823 5.99041 6.09683 6.41239 6.53209 7.03061 7.43118 7.80552 8.78176 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.003284 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.031390 B = 8525.428362 C = 9804.343861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 C 0.143 3.857 4 N -0.287 5.287 5 N -0.323 5.323 6 C 0.166 3.834 7 C -0.056 4.056 8 C -0.097 4.097 9 C 0.175 3.825 10 N -0.671 5.671 11 C 0.119 3.881 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.110 4.110 15 C -0.213 4.213 16 C 0.072 3.928 17 O -0.225 6.225 18 C -0.403 4.403 19 H 0.098 0.902 20 C -0.018 4.018 21 N -0.916 5.916 22 Si 1.009 2.991 23 H -0.254 1.254 24 H -0.272 1.272 25 H -0.273 1.273 26 C -0.011 4.011 27 N -0.368 5.368 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.190 0.810 34 H 0.168 0.832 35 H 0.414 0.586 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.140 0.860 39 H 0.120 0.880 40 H 0.270 0.730 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.675 5.182 -9.393 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.120 4.120 4 N -0.127 5.127 5 N -0.169 5.169 6 C -0.085 4.085 7 C -0.077 4.077 8 C -0.123 4.123 9 C 0.073 3.927 10 N -0.295 5.295 11 C 0.021 3.979 12 C -0.164 4.164 13 C -0.167 4.167 14 C -0.130 4.130 15 C -0.233 4.233 16 C 0.020 3.980 17 O -0.133 6.133 18 C -0.479 4.479 19 H 0.116 0.884 20 C -0.215 4.215 21 N -0.555 5.555 22 Si 0.829 3.171 23 H -0.177 1.177 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.137 4.137 27 N -0.046 5.046 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.207 0.793 34 H 0.185 0.815 35 H 0.251 0.749 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.079 0.921 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.384 5.224 -11.110 13.036 hybrid contribution 0.229 -1.131 2.464 2.721 sum -4.156 4.092 -8.646 10.429 Atomic orbital electron populations 1.21736 0.92761 1.03881 1.01779 1.20208 0.97220 0.83841 1.05979 1.25483 1.07007 0.99192 0.80306 1.74096 1.14813 0.99150 1.24638 1.74823 1.22084 1.12896 1.07144 1.22682 1.04655 0.88421 0.92714 1.20408 0.99533 0.98221 0.89548 1.21506 0.97810 0.97096 0.95873 1.17036 0.97496 0.94387 0.83752 1.41733 1.67739 1.18298 1.01757 1.17183 1.02442 0.92497 0.85752 1.20861 1.02112 0.92941 1.00514 1.20981 1.02938 1.00151 0.92600 1.21061 0.99363 0.96502 0.96032 1.21157 1.06239 0.96052 0.99826 1.19382 0.97562 0.89352 0.91684 1.83826 1.69142 1.35798 1.24487 1.21711 1.43148 1.03198 0.79847 0.88435 1.26315 0.96085 0.93980 1.05146 1.70141 1.40876 1.06753 1.37723 0.84647 0.78431 0.79122 0.74853 1.17720 1.19758 1.19834 1.21173 1.09260 1.04145 0.79171 1.43351 1.42093 1.12559 1.06609 0.92667 0.88827 0.93560 0.86832 0.88397 0.79308 0.81502 0.74923 0.83843 0.83142 0.84194 0.86268 0.92133 0.80181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.89 71.98 0.71 -1.58 16 2 C -0.03 -0.59 6.46 29.85 0.19 -0.40 16 3 C 0.14 3.83 7.39 137.71 1.02 4.84 16 4 N -0.29 -9.19 12.19 -49.68 -0.61 -9.80 16 5 N -0.32 -10.66 12.31 -55.40 -0.68 -11.34 16 6 C 0.17 4.73 7.91 134.07 1.06 5.79 16 7 C -0.06 -1.22 10.10 22.36 0.23 -1.00 16 8 C -0.10 -2.21 7.37 22.42 0.17 -2.04 16 9 C 0.18 4.70 5.81 37.90 0.22 4.92 16 10 N -0.67 -22.07 5.46 -180.64 -0.99 -23.05 16 11 C 0.12 4.26 6.46 38.33 0.25 4.50 16 12 C -0.14 -4.11 8.05 22.39 0.18 -3.93 16 13 C -0.15 -3.92 10.04 22.28 0.22 -3.69 16 14 C -0.11 -3.32 10.04 22.29 0.22 -3.10 16 15 C -0.21 -8.28 9.16 22.37 0.21 -8.07 16 16 C 0.07 3.13 6.67 22.70 0.15 3.28 16 17 O -0.23 -11.89 9.02 -22.89 -0.21 -12.10 16 18 C -0.40 -21.48 9.49 67.91 0.64 -20.84 16 19 H 0.10 4.84 5.21 -2.91 -0.02 4.82 16 20 C -0.02 -0.93 5.49 84.82 0.47 -0.46 16 21 N -0.92 -51.97 13.67 21.61 0.30 -51.67 16 22 Si 1.01 40.54 29.55 68.60 2.03 42.57 16 23 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 26 C -0.01 -0.27 10.82 83.34 0.90 0.63 16 27 N -0.37 -9.97 2.95 -342.18 -1.01 -10.98 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.19 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.17 3.43 6.73 -2.91 -0.02 3.41 16 35 H 0.41 15.19 8.22 -92.71 -0.76 14.43 16 36 H 0.14 3.44 5.36 -2.91 -0.02 3.43 16 37 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 38 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 39 H 0.12 4.80 5.64 -2.91 -0.02 4.79 16 40 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 41 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -68.95 350.02 6.00 -62.95 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.33 Total: 34.57 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 6.84 Total: -21.14 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -2.99 Total: -106.85 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.21 Total: -12.10 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -68.95 6.00 -62.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212599559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.932 kcal (2) G-P(sol) polarization free energy of solvation -68.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds