Wall clock time and date at job start Tue Mar 31 2020 14:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46642 * 2 1 4 4 N 1.46495 * 109.47281 * 119.99850 * 2 1 3 5 5 C 1.36032 * 126.33696 * 300.02784 * 4 2 1 6 6 N 1.30097 * 110.12397 * 179.97438 * 5 4 2 7 7 C 1.35821 * 109.61897 * 359.97438 * 6 5 4 8 8 C 1.39604 * 133.53237 * 180.27405 * 7 6 5 9 9 C 1.38747 * 119.52773 * 180.21702 * 8 7 6 10 10 C 1.48398 * 119.87493 * 179.73386 * 9 8 7 11 11 C 1.39583 * 120.01198 * 309.70657 * 10 9 8 12 12 C 1.38469 * 120.42085 * 180.02562 * 11 10 9 13 13 C 1.37665 * 120.45087 * 359.77769 * 12 11 10 14 14 C 1.40752 * 120.01548 * 0.47159 * 13 12 11 15 15 C 1.41315 * 120.20746 * 179.78382 * 14 13 12 16 16 H 1.07994 * 120.00026 * 149.64029 * 15 14 13 17 17 C 1.39931 * 119.99942 * 329.91805 * 15 14 13 18 18 N 1.30848 * 119.99897 * 161.84372 * 17 15 14 19 19 Si 1.86798 * 120.00054 * 341.83728 * 17 15 14 20 20 H 1.48498 * 109.46980 * 95.40517 * 19 17 15 21 21 H 1.48499 * 109.47147 * 215.40221 * 19 17 15 22 22 H 1.48503 * 109.47195 * 335.40542 * 19 17 15 23 23 C 1.39057 * 120.01524 * 129.71935 * 10 9 8 24 24 F 1.35100 * 120.22429 * 359.96526 * 23 10 9 25 25 C 1.39831 * 120.25248 * 359.45493 * 9 8 7 26 26 C 1.36592 * 120.48257 * 0.29796 * 25 9 8 27 27 C 1.38094 * 126.33125 * 120.00376 * 4 2 1 28 28 H 1.09008 * 109.46732 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47141 * 299.99906 * 1 2 3 30 30 H 1.08997 * 109.47364 * 60.00438 * 1 2 3 31 31 H 1.09004 * 109.47166 * 240.00392 * 2 1 3 32 32 H 1.09007 * 109.46734 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47368 * 299.99984 * 3 2 1 34 34 H 1.08996 * 109.47276 * 60.00176 * 3 2 1 35 35 H 1.08001 * 124.93705 * 359.97438 * 5 4 2 36 36 H 1.08002 * 120.23193 * 359.97097 * 8 7 6 37 37 H 1.08003 * 119.79368 * 0.02562 * 11 10 9 38 38 H 1.07995 * 119.77547 * 180.02562 * 12 11 10 39 39 H 1.07997 * 119.99243 * 180.23842 * 13 12 11 40 40 H 0.97003 * 119.99878 * 180.02562 * 18 17 15 41 41 H 1.07997 * 119.75839 * 180.27573 * 25 9 8 42 42 H 1.08004 * 119.94693 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 1.7701 -0.3403 2.4869 6 7 2.3574 -1.1715 3.2972 7 6 3.0232 -2.1136 2.5803 8 6 3.7989 -3.2196 2.9324 9 6 4.3616 -4.0051 1.9367 10 6 5.1923 -5.1792 2.3023 11 6 6.2287 -5.0403 3.2269 12 6 7.0095 -6.1300 3.5738 13 6 6.7710 -7.3653 3.0150 14 6 5.7341 -7.5254 2.0767 15 6 5.4887 -8.7906 1.4972 16 1 4.4876 -9.0615 1.1959 17 6 6.5418 -9.6947 1.3190 18 7 6.2888 -10.9638 1.1254 19 14 8.3087 -9.0898 1.3574 20 1 8.8644 -9.2713 2.7224 21 1 9.1191 -9.8670 0.3856 22 1 8.3471 -7.6503 0.9946 23 6 4.9387 -6.4180 1.7238 24 9 3.9366 -6.5582 0.8287 25 6 4.1441 -3.6981 0.5900 26 6 3.3819 -2.6202 0.2393 27 6 2.8156 -1.8178 1.2219 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.1722 0.5050 2.7943 36 1 3.9630 -3.4598 3.9725 37 1 6.4230 -4.0769 3.6746 38 1 7.8084 -6.0109 4.2906 39 1 7.3821 -8.2111 3.2938 40 1 7.0188 -11.5906 1.0023 41 1 4.5823 -4.3176 -0.1786 42 1 3.2198 -2.3908 -0.8035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240369921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:45 Heat of formation + Delta-G solvation = 37.039055 kcal Electronic energy + Delta-G solvation = -26141.888755 eV Core-core repulsion = 22387.230342 eV Total energy + Delta-G solvation = -3754.658413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -47.41038 -42.07116 -38.20948 -36.95930 -35.88600 -33.76245 -32.09769 -30.95913 -29.94288 -29.40175 -27.76908 -27.70222 -25.22960 -23.41707 -23.23461 -22.34894 -20.70589 -20.58307 -19.59996 -17.69869 -17.25903 -16.71954 -16.41985 -15.52405 -15.42912 -15.12195 -14.85598 -14.79467 -14.35406 -14.15439 -13.76583 -13.56821 -13.52843 -13.37394 -13.10631 -12.79128 -12.72199 -12.21602 -12.06389 -11.98736 -11.94260 -11.67612 -11.62164 -11.34530 -11.22051 -10.85927 -10.81756 -10.38969 -10.23394 -9.94173 -9.83540 -9.77782 -9.24711 -8.33398 -7.97869 -7.65834 -7.30707 -7.03313 -4.56530 1.18656 1.53441 2.43122 2.48134 2.53099 2.93601 3.05364 3.15778 3.26346 3.91112 4.09462 4.15483 4.30714 4.42089 4.48592 4.49592 4.64520 5.02364 5.03153 5.14730 5.17974 5.22212 5.22608 5.36940 5.51479 5.59615 5.61197 5.67223 5.69736 5.74289 5.95671 5.99886 6.23492 6.34516 6.43444 6.57159 6.68002 6.72025 6.88645 6.97723 7.09358 7.20069 7.29695 7.39819 7.53971 7.67232 7.90195 7.97218 8.26378 8.49034 8.66000 9.98478 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.002921 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.419480 B = 9583.300865 C =10025.687437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 C -0.163 4.163 4 N -0.490 5.490 5 C 0.249 3.751 6 N -0.494 5.494 7 C 0.043 3.957 8 C -0.054 4.054 9 C -0.031 4.031 10 C -0.050 4.050 11 C -0.204 4.204 12 C -0.084 4.084 13 C -0.218 4.218 14 C 0.066 3.934 15 C -0.438 4.438 16 H 0.095 0.905 17 C 0.085 3.915 18 N -0.800 5.800 19 Si 0.910 3.090 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.242 1.242 23 C 0.009 3.991 24 F -0.151 7.151 25 C -0.073 4.073 26 C -0.118 4.118 27 C 0.045 3.955 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.205 0.795 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.287 0.713 41 H 0.132 0.868 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.301 20.298 -3.129 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 C -0.221 4.221 4 N -0.182 5.182 5 C -0.036 4.036 6 N -0.213 5.213 7 C -0.074 4.074 8 C -0.073 4.073 9 C -0.034 4.034 10 C -0.051 4.051 11 C -0.224 4.224 12 C -0.103 4.103 13 C -0.238 4.238 14 C 0.063 3.937 15 C -0.466 4.466 16 H 0.113 0.887 17 C -0.135 4.135 18 N -0.424 5.424 19 Si 0.736 3.264 20 H -0.193 1.193 21 H -0.216 1.216 22 H -0.165 1.165 23 C -0.011 4.011 24 F -0.129 7.129 25 C -0.093 4.093 26 C -0.139 4.139 27 C -0.063 4.063 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.221 0.779 36 H 0.148 0.852 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.150 0.850 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.378 20.071 -2.463 21.204 hybrid contribution 0.498 0.028 -1.023 1.138 sum -5.879 20.099 -3.486 21.229 Atomic orbital electron populations 1.22197 0.93401 1.03364 1.03188 1.21335 0.95188 0.93665 0.86693 1.22194 1.02308 0.94386 1.03200 1.45506 1.42081 1.23328 1.07279 1.25022 0.99957 0.99926 0.78743 1.70433 1.13408 1.05192 1.32281 1.18894 1.02138 0.97519 0.88852 1.20310 0.95579 0.91815 0.99639 1.18573 0.97600 0.94855 0.92363 1.18300 0.97268 0.90285 0.99219 1.20275 0.99928 0.98219 1.03945 1.20572 0.98158 0.92864 0.98686 1.20920 1.03590 0.97071 1.02195 1.17634 0.91622 0.92120 0.92343 1.19400 0.97711 0.95421 1.34040 0.88683 1.26160 1.02261 0.93828 0.91271 1.69693 1.36099 1.02905 1.33673 0.86313 0.80404 0.81325 0.78339 1.19345 1.21569 1.16516 1.17736 0.93673 0.93115 0.96619 1.91313 1.59011 1.96492 1.66128 1.20800 0.96923 0.95555 0.95999 1.19499 1.01243 0.96195 0.96954 1.18920 0.99115 0.91162 0.97099 0.91609 0.91675 0.90514 0.88388 0.91688 0.90523 0.91677 0.77886 0.85151 0.87651 0.87975 0.87413 0.90210 0.85025 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.25 37.16 0.34 -0.61 16 2 C 0.13 1.00 3.59 -67.93 -0.24 0.75 16 3 C -0.16 -0.91 9.25 37.16 0.34 -0.56 16 4 N -0.49 -5.60 2.67 -108.65 -0.29 -5.89 16 5 C 0.25 2.90 11.50 -89.80 -1.03 1.87 16 6 N -0.49 -7.83 11.28 -12.06 -0.14 -7.97 16 7 C 0.04 0.74 7.22 -84.71 -0.61 0.13 16 8 C -0.05 -0.98 9.54 -38.88 -0.37 -1.35 16 9 C -0.03 -0.60 5.31 -104.93 -0.56 -1.16 16 10 C -0.05 -1.07 5.46 -104.91 -0.57 -1.64 16 11 C -0.20 -4.15 9.50 -39.00 -0.37 -4.52 16 12 C -0.08 -1.75 10.01 -39.71 -0.40 -2.15 16 13 C -0.22 -5.11 7.17 -38.84 -0.28 -5.39 16 14 C 0.07 1.69 5.10 -106.80 -0.54 1.15 16 15 C -0.44 -11.92 9.25 -37.78 -0.35 -12.27 16 16 H 0.10 2.77 7.98 -52.49 -0.42 2.35 16 17 C 0.08 2.20 5.40 -17.34 -0.09 2.10 16 18 N -0.80 -21.10 13.93 55.55 0.77 -20.32 16 19 Si 0.91 20.24 24.52 -169.99 -4.17 16.07 16 20 H -0.27 -5.69 6.71 56.52 0.38 -5.31 16 21 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.24 -5.49 6.87 56.52 0.39 -5.10 16 23 C 0.01 0.21 7.15 -38.30 -0.27 -0.06 16 24 F -0.15 -3.67 15.37 2.25 0.03 -3.63 16 25 C -0.07 -1.27 8.78 -39.58 -0.35 -1.61 16 26 C -0.12 -1.75 9.81 -39.92 -0.39 -2.14 16 27 C 0.04 0.68 6.87 -83.91 -0.58 0.10 16 28 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.34 7.95 -51.93 -0.41 -0.08 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.72 7.59 -51.93 -0.39 0.32 16 32 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.32 7.95 -51.93 -0.41 -0.09 16 35 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.13 2.30 8.03 -52.49 -0.42 1.88 16 37 H 0.11 1.90 8.03 -52.48 -0.42 1.48 16 38 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.11 2.48 4.75 -52.49 -0.25 2.23 16 40 H 0.29 6.80 8.30 -40.82 -0.34 6.47 16 41 H 0.13 2.25 7.75 -52.49 -0.41 1.85 16 42 H 0.12 1.39 7.72 -52.48 -0.41 0.98 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -30.34 353.31 -10.04 -40.37 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.25 Total: 3.42 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -6.33 Total: -27.39 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.35 Total: -34.17 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.03 Total: -3.63 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.17 Total: 16.07 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.34 -10.04 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240369921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.412 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds