Wall clock time and date at job start Tue Mar 31 2020 14:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47081 * 2 1 4 4 N 1.46498 * 109.47265 * 119.99685 * 2 1 3 5 5 C 1.36024 * 126.33374 * 299.98129 * 4 2 1 6 6 N 1.30102 * 110.12356 * 179.97438 * 5 4 2 7 7 C 1.35816 * 109.61318 * 359.97438 * 6 5 4 8 8 C 1.39593 * 133.53446 * 179.97438 * 7 6 5 9 9 C 1.38746 * 119.53011 * 179.97438 * 8 7 6 10 10 C 1.48408 * 119.87503 * 180.02562 * 9 8 7 11 11 C 1.39696 * 119.98615 * 359.97438 * 10 9 8 12 12 C 1.38621 * 120.35607 * 179.74663 * 11 10 9 13 13 F 1.35101 * 119.83923 * 179.97438 * 12 11 10 14 14 C 1.37946 * 120.32493 * 359.97438 * 12 11 10 15 15 C 1.40716 * 119.96550 * 359.97438 * 14 12 11 16 16 C 1.41422 * 120.17165 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00155 * 204.52335 * 16 15 14 18 18 C 1.39928 * 120.00068 * 24.52867 * 16 15 14 19 19 N 1.30827 * 120.00027 * 17.90177 * 18 16 15 20 20 Si 1.86794 * 119.99824 * 197.89934 * 18 16 15 21 21 H 1.48497 * 109.47469 * 90.00011 * 20 18 16 22 22 H 1.48503 * 109.47061 * 210.00037 * 20 18 16 23 23 H 1.48507 * 109.47434 * 329.99684 * 20 18 16 24 24 C 1.38738 * 119.98929 * 179.72465 * 10 9 8 25 25 C 1.39833 * 120.25792 * 0.27364 * 9 8 7 26 26 C 1.36600 * 120.47722 * 359.42469 * 25 9 8 27 27 C 1.38064 * 126.32647 * 119.97191 * 4 2 1 28 28 H 1.09001 * 109.47390 * 300.00393 * 1 2 3 29 29 H 1.09005 * 109.47274 * 59.99694 * 1 2 3 30 30 H 1.08992 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47056 * 240.00311 * 2 1 3 32 32 H 1.09003 * 109.47391 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47124 * 299.99819 * 3 2 1 34 34 H 1.09001 * 109.47329 * 59.99570 * 3 2 1 35 35 H 1.08003 * 124.93968 * 0.02562 * 5 4 2 36 36 H 1.07997 * 120.23657 * 359.97438 * 8 7 6 37 37 H 1.08004 * 119.82262 * 359.72844 * 11 10 9 38 38 H 1.08001 * 120.01564 * 179.97438 * 14 12 11 39 39 H 0.97001 * 120.00188 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.16164 * 0.25408 * 24 10 9 41 41 H 1.07996 * 119.76486 * 179.69925 * 25 9 8 42 42 H 1.08002 * 119.94102 * 180.29575 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7708 -0.3396 2.4868 6 7 2.3579 -1.1710 3.2972 7 6 3.0227 -2.1137 2.5804 8 6 3.8021 -3.2171 2.9324 9 6 4.3582 -4.0071 1.9366 10 6 5.1876 -5.1823 2.3022 11 6 5.4073 -5.4906 3.6469 12 6 6.1763 -6.5895 3.9970 13 9 6.3825 -6.8777 5.3007 14 6 6.7322 -7.3902 3.0209 15 6 6.5187 -7.0927 1.6621 16 6 7.0869 -7.9103 0.6578 17 1 7.2739 -7.5059 -0.3261 18 6 7.4068 -9.2433 0.9387 19 7 6.8797 -9.8374 1.9783 20 14 8.5863 -10.1744 -0.1708 21 1 9.9754 -9.9968 0.3234 22 1 8.2387 -11.6181 -0.1621 23 1 8.4826 -9.6487 -1.5558 24 6 5.7401 -5.9773 1.3084 25 6 4.1446 -3.6974 0.5898 26 6 3.3779 -2.6227 0.2392 27 6 2.8149 -1.8179 1.2218 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.1730 0.5057 2.7942 36 1 3.9709 -3.4540 3.9724 37 1 4.9759 -4.8693 4.4178 38 1 7.3309 -8.2448 3.2993 39 1 7.1017 -10.7613 2.1732 40 1 5.5717 -5.7409 0.2682 41 1 4.5853 -4.3150 -0.1787 42 1 3.2147 -2.3942 -0.8037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240371921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:51 Heat of formation + Delta-G solvation = 34.149169 kcal Electronic energy + Delta-G solvation = -25679.089017 eV Core-core repulsion = 21924.305289 eV Total energy + Delta-G solvation = -3754.783727 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -47.63437 -42.04549 -38.30066 -36.74957 -35.81606 -33.78572 -31.94133 -30.52616 -29.90847 -29.16368 -27.76089 -27.39386 -25.52801 -23.33922 -23.13456 -22.42139 -20.65792 -20.31960 -19.49950 -17.72586 -17.29987 -16.56799 -15.99055 -15.48353 -15.17933 -15.07605 -14.84447 -14.59331 -14.35471 -14.29914 -14.09006 -13.53720 -13.44781 -13.36536 -12.87466 -12.79130 -12.69024 -12.08977 -12.00704 -11.88938 -11.75857 -11.63934 -11.56605 -11.32942 -11.13012 -10.86465 -10.57968 -10.46413 -10.20381 -10.03121 -9.78085 -9.65015 -9.29059 -8.39838 -7.96079 -7.51233 -6.99293 -6.84120 -4.52537 1.20716 1.48761 2.55603 2.63708 2.79918 3.00466 3.03889 3.05819 3.16589 3.85027 4.16607 4.17932 4.37819 4.49213 4.50407 4.58031 4.65682 5.03200 5.04437 5.16670 5.22988 5.23742 5.38063 5.50424 5.52213 5.57774 5.67939 5.69528 5.73315 5.88477 5.95091 6.24354 6.42647 6.55617 6.60140 6.72610 6.78126 6.86540 6.99293 7.12503 7.15152 7.23737 7.48775 7.63097 7.74297 7.84205 8.00801 8.12920 8.45894 8.72801 8.75082 10.06464 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.002765 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.278058 B =10125.163352 C =11306.242190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.163 4.163 4 N -0.490 5.490 5 C 0.249 3.751 6 N -0.495 5.495 7 C 0.045 3.955 8 C -0.064 4.064 9 C -0.025 4.025 10 C -0.007 4.007 11 C -0.261 4.261 12 C 0.106 3.894 13 F -0.166 7.166 14 C -0.195 4.195 15 C 0.127 3.873 16 C -0.457 4.457 17 H 0.084 0.916 18 C 0.075 3.925 19 N -0.786 5.786 20 Si 0.911 3.089 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.210 4.210 25 C -0.084 4.084 26 C -0.117 4.117 27 C 0.040 3.960 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.204 0.796 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.130 0.870 39 H 0.284 0.716 40 H 0.104 0.896 41 H 0.136 0.864 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.423 16.474 -6.314 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 C -0.221 4.221 4 N -0.182 5.182 5 C -0.037 4.037 6 N -0.214 5.214 7 C -0.072 4.072 8 C -0.084 4.084 9 C -0.028 4.028 10 C -0.008 4.008 11 C -0.281 4.281 12 C 0.087 3.913 13 F -0.145 7.145 14 C -0.216 4.216 15 C 0.124 3.876 16 C -0.486 4.486 17 H 0.102 0.898 18 C -0.144 4.144 19 N -0.410 5.410 20 Si 0.736 3.264 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.230 4.230 25 C -0.104 4.104 26 C -0.138 4.138 27 C -0.067 4.067 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.221 0.779 36 H 0.149 0.851 37 H 0.123 0.877 38 H 0.147 0.853 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.154 0.846 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.497 16.307 -5.374 19.621 hybrid contribution 0.391 -0.506 -1.035 1.217 sum -9.106 15.801 -6.410 19.330 Atomic orbital electron populations 1.22196 0.93455 1.03305 1.03175 1.21324 0.95130 0.93673 0.86717 1.22196 1.02342 0.94403 1.03176 1.45484 1.42168 1.23324 1.07227 1.25018 0.99986 0.99934 0.78764 1.70438 1.13445 1.05207 1.32304 1.18920 1.01904 0.97488 0.88841 1.20395 0.95937 0.92016 1.00032 1.18721 0.97048 0.94843 0.92147 1.17964 0.96887 0.93164 0.92742 1.20317 1.10666 1.01649 0.95454 1.17561 1.00274 0.96555 0.76890 1.91342 1.93997 1.93587 1.35584 1.21372 1.05828 1.02139 0.92219 1.17281 0.88214 0.90368 0.91721 1.19588 1.35685 0.94679 0.98620 0.89820 1.25968 0.94707 0.98175 0.95564 1.69814 1.33467 1.12792 1.24931 0.86256 0.80836 0.78379 0.80979 1.19129 1.20224 1.18462 1.21111 1.04789 1.00231 0.96842 1.20853 0.97226 0.96020 0.96253 1.19516 1.01249 0.96207 0.96862 1.18921 0.99434 0.91265 0.97124 0.91688 0.90546 0.91650 0.88411 0.91664 0.90549 0.91688 0.77938 0.85064 0.87667 0.85262 0.90503 0.87773 0.84604 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.25 37.16 0.34 -0.59 16 2 C 0.13 0.99 3.59 -67.93 -0.24 0.74 16 3 C -0.16 -0.92 9.25 37.16 0.34 -0.58 16 4 N -0.49 -5.60 2.67 -108.65 -0.29 -5.89 16 5 C 0.25 2.94 11.50 -89.80 -1.03 1.90 16 6 N -0.50 -8.00 11.28 -12.06 -0.14 -8.13 16 7 C 0.05 0.79 7.22 -84.71 -0.61 0.18 16 8 C -0.06 -1.20 9.47 -38.89 -0.37 -1.57 16 9 C -0.03 -0.48 5.87 -104.92 -0.62 -1.10 16 10 C -0.01 -0.16 5.87 -104.98 -0.62 -0.78 16 11 C -0.26 -6.00 9.40 -38.90 -0.37 -6.37 16 12 C 0.11 2.64 7.28 -39.55 -0.29 2.35 16 13 F -0.17 -3.99 17.26 2.25 0.04 -3.96 16 14 C -0.20 -5.11 8.67 -38.75 -0.34 -5.44 16 15 C 0.13 3.26 5.57 -106.87 -0.60 2.66 16 16 C -0.46 -11.52 9.05 -37.74 -0.34 -11.86 16 17 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 18 C 0.08 1.82 5.13 -17.35 -0.09 1.73 16 19 N -0.79 -19.89 10.96 55.55 0.61 -19.28 16 20 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 24 C -0.21 -4.87 9.16 -38.52 -0.35 -5.22 16 25 C -0.08 -1.39 9.35 -39.58 -0.37 -1.76 16 26 C -0.12 -1.68 9.81 -39.92 -0.39 -2.07 16 27 C 0.04 0.60 6.87 -83.92 -0.58 0.03 16 28 H 0.06 0.33 7.95 -51.93 -0.41 -0.08 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.70 7.58 -51.93 -0.39 0.30 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.33 7.95 -51.93 -0.41 -0.09 16 35 H 0.20 1.47 8.06 -52.48 -0.42 1.04 16 36 H 0.13 2.43 6.16 -52.49 -0.32 2.11 16 37 H 0.11 2.22 6.16 -52.48 -0.32 1.90 16 38 H 0.13 3.51 6.15 -52.49 -0.32 3.19 16 39 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 40 H 0.10 2.17 6.16 -52.49 -0.32 1.85 16 41 H 0.14 2.09 6.15 -52.49 -0.32 1.76 16 42 H 0.12 1.31 7.72 -52.49 -0.41 0.90 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -29.77 354.21 -10.88 -40.65 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.90 Total: 6.06 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -6.51 Total: -27.73 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.18 Total: -33.29 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.04 Total: -3.96 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.77 -10.88 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240371921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.800 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds