Wall clock time and date at job start Tue Mar 31 2020 14:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47081 * 2 1 4 4 N 1.46498 * 109.47265 * 119.99685 * 2 1 3 5 5 C 1.36024 * 126.33374 * 299.98129 * 4 2 1 6 6 N 1.30102 * 110.12356 * 179.97438 * 5 4 2 7 7 C 1.35816 * 109.61318 * 359.97438 * 6 5 4 8 8 C 1.39593 * 133.53446 * 179.97438 * 7 6 5 9 9 C 1.38746 * 119.53011 * 179.97438 * 8 7 6 10 10 C 1.48408 * 119.87503 * 180.02562 * 9 8 7 11 11 C 1.39696 * 119.98615 * 359.97438 * 10 9 8 12 12 C 1.38621 * 120.35607 * 179.74663 * 11 10 9 13 13 F 1.35101 * 119.83923 * 179.97438 * 12 11 10 14 14 C 1.37946 * 120.32493 * 359.97438 * 12 11 10 15 15 C 1.40716 * 119.96550 * 359.97438 * 14 12 11 16 16 C 1.41422 * 120.17165 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00155 * 204.52335 * 16 15 14 18 18 C 1.39928 * 120.00068 * 24.52867 * 16 15 14 19 19 N 1.30827 * 120.00027 * 17.90177 * 18 16 15 20 20 Si 1.86794 * 119.99824 * 197.89934 * 18 16 15 21 21 H 1.48497 * 109.47469 * 90.00011 * 20 18 16 22 22 H 1.48503 * 109.47061 * 210.00037 * 20 18 16 23 23 H 1.48507 * 109.47434 * 329.99684 * 20 18 16 24 24 C 1.38738 * 119.98929 * 179.72465 * 10 9 8 25 25 C 1.39833 * 120.25792 * 0.27364 * 9 8 7 26 26 C 1.36600 * 120.47722 * 359.42469 * 25 9 8 27 27 C 1.38064 * 126.32647 * 119.97191 * 4 2 1 28 28 H 1.09001 * 109.47390 * 300.00393 * 1 2 3 29 29 H 1.09005 * 109.47274 * 59.99694 * 1 2 3 30 30 H 1.08992 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47056 * 240.00311 * 2 1 3 32 32 H 1.09003 * 109.47391 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47124 * 299.99819 * 3 2 1 34 34 H 1.09001 * 109.47329 * 59.99570 * 3 2 1 35 35 H 1.08003 * 124.93968 * 0.02562 * 5 4 2 36 36 H 1.07997 * 120.23657 * 359.97438 * 8 7 6 37 37 H 1.08004 * 119.82262 * 359.72844 * 11 10 9 38 38 H 1.08001 * 120.01564 * 179.97438 * 14 12 11 39 39 H 0.97001 * 120.00188 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.16164 * 0.25408 * 24 10 9 41 41 H 1.07996 * 119.76486 * 179.69925 * 25 9 8 42 42 H 1.08002 * 119.94102 * 180.29575 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7708 -0.3396 2.4868 6 7 2.3579 -1.1710 3.2972 7 6 3.0227 -2.1137 2.5804 8 6 3.8021 -3.2171 2.9324 9 6 4.3582 -4.0071 1.9366 10 6 5.1876 -5.1823 2.3022 11 6 5.4073 -5.4906 3.6469 12 6 6.1763 -6.5895 3.9970 13 9 6.3825 -6.8777 5.3007 14 6 6.7322 -7.3902 3.0209 15 6 6.5187 -7.0927 1.6621 16 6 7.0869 -7.9103 0.6578 17 1 7.2739 -7.5059 -0.3261 18 6 7.4068 -9.2433 0.9387 19 7 6.8797 -9.8374 1.9783 20 14 8.5863 -10.1744 -0.1708 21 1 9.9754 -9.9968 0.3234 22 1 8.2387 -11.6181 -0.1621 23 1 8.4826 -9.6487 -1.5558 24 6 5.7401 -5.9773 1.3084 25 6 4.1446 -3.6974 0.5898 26 6 3.3779 -2.6227 0.2392 27 6 2.8149 -1.8179 1.2218 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.1730 0.5057 2.7942 36 1 3.9709 -3.4540 3.9724 37 1 4.9759 -4.8693 4.4178 38 1 7.3309 -8.2448 3.2993 39 1 7.1017 -10.7613 2.1732 40 1 5.5717 -5.7409 0.2682 41 1 4.5853 -4.3150 -0.1787 42 1 3.2147 -2.3942 -0.8037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240371921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:51 Heat of formation + Delta-G solvation = 21.601723 kcal Electronic energy + Delta-G solvation = -25679.633115 eV Core-core repulsion = 21924.305289 eV Total energy + Delta-G solvation = -3755.327826 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.59730 -43.11869 -39.86581 -38.12246 -36.73625 -35.55906 -33.15963 -31.88506 -31.60792 -30.50836 -28.85929 -28.16448 -27.38734 -24.57414 -24.15634 -23.75008 -22.35600 -21.88468 -20.53373 -19.39852 -18.30935 -17.88150 -17.67723 -16.74298 -16.65589 -16.48019 -16.44608 -16.26569 -15.93807 -15.39809 -15.25875 -14.80706 -14.57889 -14.41487 -14.21690 -13.92220 -13.54223 -13.45534 -13.31292 -13.25429 -13.06097 -12.80888 -12.70796 -12.47213 -12.36809 -12.17986 -12.07703 -12.03282 -11.75095 -11.51085 -11.32721 -11.05804 -10.88995 -9.91843 -9.41703 -9.16677 -8.72363 -8.53611 -6.45545 -0.08204 0.15346 0.77910 1.20064 1.40816 1.54014 1.55026 1.67965 1.90323 2.19556 2.57753 2.99717 3.29155 3.56380 3.62092 3.63049 3.67597 4.00016 4.02487 4.06659 4.14561 4.35271 4.41837 4.44578 4.48413 4.58445 4.70064 4.76150 4.84010 4.85513 4.87697 4.99173 5.04252 5.13884 5.19278 5.27012 5.27424 5.41115 5.50371 5.53560 5.63004 5.71433 5.88682 5.94420 6.00026 6.24529 6.29864 6.55239 6.82948 6.85706 6.92665 8.26723 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.002765 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.278058 B =10125.163352 C =11306.242190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.126 3.874 3 C -0.159 4.159 4 N -0.481 5.481 5 C 0.270 3.730 6 N -0.542 5.542 7 C 0.021 3.979 8 C -0.078 4.078 9 C -0.049 4.049 10 C 0.002 3.998 11 C -0.271 4.271 12 C 0.095 3.905 13 F -0.167 7.167 14 C -0.226 4.226 15 C 0.104 3.896 16 C -0.483 4.483 17 H 0.094 0.906 18 C 0.033 3.967 19 N -0.821 5.821 20 Si 0.988 3.012 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.249 1.249 24 C -0.217 4.217 25 C -0.095 4.095 26 C -0.100 4.100 27 C 0.039 3.961 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.291 0.709 40 H 0.126 0.874 41 H 0.145 0.855 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 19.178 -9.145 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 C -0.216 4.216 4 N -0.171 5.171 5 C -0.015 4.015 6 N -0.261 5.261 7 C -0.097 4.097 8 C -0.098 4.098 9 C -0.051 4.051 10 C 0.002 3.998 11 C -0.291 4.291 12 C 0.076 3.924 13 F -0.146 7.146 14 C -0.247 4.247 15 C 0.101 3.899 16 C -0.512 4.512 17 H 0.112 0.888 18 C -0.183 4.183 19 N -0.446 5.446 20 Si 0.808 3.192 21 H -0.189 1.189 22 H -0.195 1.195 23 H -0.172 1.172 24 C -0.237 4.237 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.071 4.071 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.267 0.733 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.144 0.856 41 H 0.163 0.837 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.130 19.047 -8.222 23.543 hybrid contribution 0.687 -1.088 -0.141 1.295 sum -10.442 17.959 -8.364 22.395 Atomic orbital electron populations 1.22191 0.91813 1.02748 1.04932 1.21746 0.96339 0.94338 0.85028 1.22190 1.01301 0.93231 1.04927 1.45847 1.40667 1.22031 1.08576 1.25923 0.97835 0.99357 0.78415 1.70414 1.15398 1.06427 1.33910 1.19054 1.02355 0.97684 0.90560 1.20328 0.97012 0.93133 0.99322 1.18598 0.98280 0.94510 0.93745 1.18271 0.95881 0.93616 0.92018 1.20543 1.10562 1.01328 0.96650 1.17757 1.00769 0.97135 0.76755 1.91321 1.94070 1.93685 1.35514 1.21278 1.07609 1.02634 0.93152 1.17642 0.88924 0.91565 0.91721 1.19924 1.36703 0.95514 0.99018 0.88843 1.26916 0.95717 0.98762 0.96939 1.69890 1.34619 1.13478 1.26629 0.85112 0.77974 0.76984 0.79152 1.18919 1.19488 1.17248 1.21342 1.04425 0.99672 0.98212 1.20933 0.98224 0.97226 0.95051 1.19809 0.99092 0.94541 0.98583 1.19092 0.99497 0.92269 0.96200 0.90727 0.88092 0.93321 0.87846 0.93252 0.88102 0.90730 0.73321 0.86490 0.86431 0.87183 0.89862 0.85637 0.83707 0.82734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.25 71.98 0.67 -0.44 16 2 C 0.13 1.32 3.59 44.99 0.16 1.48 16 3 C -0.16 -1.08 9.25 71.98 0.67 -0.41 16 4 N -0.48 -9.40 2.67 -497.67 -1.33 -10.73 16 5 C 0.27 5.54 11.50 180.06 2.07 7.61 16 6 N -0.54 -16.89 11.28 -192.08 -2.17 -19.06 16 7 C 0.02 0.71 7.22 39.43 0.28 1.00 16 8 C -0.08 -3.01 9.47 22.72 0.22 -2.79 16 9 C -0.05 -1.90 5.87 -20.06 -0.12 -2.02 16 10 C 0.00 0.11 5.87 -20.10 -0.12 0.00 16 11 C -0.27 -13.09 9.40 22.71 0.21 -12.88 16 12 C 0.09 4.98 7.28 22.29 0.16 5.14 16 13 F -0.17 -8.47 17.26 44.97 0.78 -7.69 16 14 C -0.23 -12.56 8.67 22.81 0.20 -12.36 16 15 C 0.10 5.58 5.57 -21.32 -0.12 5.46 16 16 C -0.48 -24.97 9.05 23.46 0.21 -24.76 16 17 H 0.09 4.48 7.91 -2.91 -0.02 4.45 16 18 C 0.03 1.61 5.13 85.25 0.44 2.05 16 19 N -0.82 -43.09 10.96 21.82 0.24 -42.85 16 20 Si 0.99 36.94 29.59 68.60 2.03 38.97 16 21 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 22 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 23 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 24 C -0.22 -10.34 9.16 22.96 0.21 -10.13 16 25 C -0.09 -3.03 9.35 22.27 0.21 -2.83 16 26 C -0.10 -2.61 9.81 22.05 0.22 -2.39 16 27 C 0.04 1.09 6.87 38.90 0.27 1.36 16 28 H 0.07 0.40 7.95 -2.39 -0.02 0.38 16 29 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 1.01 7.58 -2.39 -0.02 0.99 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.07 0.39 7.95 -2.39 -0.02 0.37 16 35 H 0.25 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.12 4.63 6.16 -2.91 -0.02 4.61 16 37 H 0.12 5.26 6.16 -2.91 -0.02 5.24 16 38 H 0.11 6.41 6.15 -2.91 -0.02 6.39 16 39 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 40 H 0.13 5.27 6.16 -2.91 -0.02 5.25 16 41 H 0.15 4.26 6.15 -2.91 -0.02 4.24 16 42 H 0.16 2.81 7.72 -2.91 -0.02 2.79 16 Total: -1.00 -69.26 354.21 6.45 -62.81 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 1.06 Total: 25.49 kcal Atomic # 6 Polarization: -52.77 SS G_CDS: 5.83 Total: -46.93 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -3.25 Total: -72.64 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 0.78 Total: -7.69 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -69.26 6.45 -62.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240371921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.415 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds