Wall clock time and date at job start Tue Mar 31 2020 14:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47148 * 2 1 4 4 N 1.46490 * 109.47195 * 120.00120 * 2 1 3 5 5 C 1.36288 * 126.27452 * 299.99748 * 4 2 1 6 6 N 1.30161 * 110.10374 * 180.02562 * 5 4 2 7 7 C 1.35498 * 109.48768 * 0.02562 * 6 5 4 8 8 C 1.39735 * 134.62137 * 180.02562 * 7 6 5 9 9 N 1.32018 * 118.72154 * 180.27655 * 8 7 6 10 10 C 1.32956 * 121.25114 * 359.47698 * 9 8 7 11 11 C 1.48112 * 118.92255 * 180.27641 * 10 9 8 12 12 C 1.39385 * 120.16662 * 179.97438 * 11 10 9 13 13 C 1.37968 * 119.93464 * 179.74707 * 12 11 10 14 14 C 1.38475 * 120.28443 * 0.55377 * 13 12 11 15 15 C 1.38083 * 120.34794 * 359.69868 * 14 13 12 16 16 C 1.38787 * 120.05135 * 0.02562 * 15 14 13 17 17 O 1.35619 * 120.13948 * 180.02562 * 16 15 14 18 18 C 1.34819 * 117.00149 * 354.39867 * 17 16 15 19 19 H 1.07998 * 119.99655 * 5.07074 * 18 17 16 20 20 C 1.38664 * 120.00101 * 185.06215 * 18 17 16 21 21 N 1.31555 * 119.99853 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00020 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47039 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47096 * 120.00525 * 22 20 18 25 25 H 1.48499 * 109.47167 * 240.00187 * 22 20 18 26 26 N 1.32533 * 122.15382 * 0.51984 * 10 9 8 27 27 C 1.32443 * 120.39448 * 359.75749 * 26 10 9 28 28 H 1.09003 * 109.47209 * 299.99776 * 1 2 3 29 29 H 1.09006 * 109.46958 * 59.99829 * 1 2 3 30 30 H 1.08991 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47209 * 240.00224 * 2 1 3 32 32 H 1.09003 * 109.47336 * 60.00305 * 3 2 1 33 33 H 1.09003 * 109.47285 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47330 * 299.99943 * 3 2 1 35 35 H 1.07997 * 124.94794 * 359.95499 * 5 4 2 36 36 H 1.07992 * 120.63952 * 0.02562 * 8 7 6 37 37 H 1.07999 * 120.03517 * 359.97438 * 12 11 10 38 38 H 1.07999 * 119.85576 * 180.25626 * 13 12 11 39 39 H 1.08008 * 119.82515 * 179.72622 * 14 13 12 40 40 H 1.08002 * 119.97249 * 180.02562 * 15 14 13 41 41 H 0.96998 * 119.99888 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7692 -0.3382 2.4888 6 7 2.3572 -1.1689 3.3002 7 6 3.0217 -2.1071 2.5832 8 6 3.8068 -3.2166 2.9078 9 7 4.3236 -3.9362 1.9290 10 6 4.1009 -3.6286 0.6549 11 6 4.7013 -4.4751 -0.4019 12 6 4.4842 -4.1767 -1.7460 13 6 5.0501 -4.9654 -2.7265 14 6 5.8244 -6.0603 -2.3814 15 6 6.0427 -6.3698 -1.0536 16 6 5.4850 -5.5828 -0.0557 17 8 5.6988 -5.8848 1.2490 18 6 6.3644 -7.0274 1.5117 19 1 6.7723 -7.6132 0.7013 20 6 6.5256 -7.4503 2.8225 21 7 6.0285 -6.7367 3.8096 22 14 7.4485 -9.0330 3.1865 23 1 7.9051 -9.6440 1.9123 24 1 8.6254 -8.7343 4.0414 25 1 6.5492 -9.9786 3.8951 26 7 3.3631 -2.5866 0.2994 27 6 2.8125 -1.8101 1.2202 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.1719 0.5077 2.7953 36 1 3.9906 -3.4780 3.9393 37 1 3.8767 -3.3268 -2.0197 38 1 4.8844 -4.7305 -3.7675 39 1 6.2601 -6.6753 -3.1551 40 1 6.6480 -7.2250 -0.7913 41 1 6.1416 -7.0323 4.7265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:54 Heat of formation + Delta-G solvation = 111.610057 kcal Electronic energy + Delta-G solvation = -26703.757457 eV Core-core repulsion = 22972.252648 eV Total energy + Delta-G solvation = -3731.504810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.22947 -39.42725 -38.37091 -36.34886 -35.97573 -33.15578 -32.34543 -31.35121 -30.62910 -29.11603 -28.26750 -27.64295 -25.38132 -24.35130 -23.58100 -22.91912 -21.45218 -20.95126 -19.75264 -18.07584 -17.93167 -17.46724 -16.62069 -15.96386 -15.80279 -15.12618 -14.65303 -14.51111 -14.35953 -14.14858 -13.99371 -13.67793 -13.50202 -13.42097 -12.82337 -12.78023 -12.54479 -12.50145 -12.41919 -11.77024 -11.68666 -11.53961 -11.31212 -11.17212 -10.91767 -10.84918 -10.78682 -10.65437 -10.42430 -9.89645 -9.32009 -9.01983 -8.85644 -8.73057 -8.35152 -7.76584 -7.08232 -6.44393 -3.98643 0.87775 1.76923 2.24563 2.38402 2.42334 3.04038 3.13453 3.14578 3.19471 3.95236 4.17593 4.29972 4.32092 4.36158 4.61312 4.77536 4.80225 4.83602 4.95490 5.10065 5.12749 5.14374 5.26532 5.29020 5.34016 5.49719 5.62699 5.68006 5.80251 5.80896 5.91177 6.06369 6.11970 6.28798 6.53643 6.65614 6.77051 6.88733 6.99911 7.10459 7.24789 7.35153 7.37420 7.61042 7.79736 7.94144 7.96475 8.85791 8.97744 9.71150 10.69596 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.003933 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.383419 B = 7118.244524 C = 8807.450312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.162 4.162 4 N -0.477 5.477 5 C 0.248 3.752 6 N -0.466 5.466 7 C -0.089 4.089 8 C 0.232 3.768 9 N -0.458 5.458 10 C 0.403 3.597 11 C -0.142 4.142 12 C -0.019 4.019 13 C -0.234 4.234 14 C -0.051 4.051 15 C -0.242 4.242 16 C 0.182 3.818 17 O -0.115 6.115 18 C -0.397 4.397 19 H 0.093 0.907 20 C 0.046 3.954 21 N -0.831 5.831 22 Si 0.937 3.063 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 N -0.537 5.537 27 C 0.283 3.717 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.213 0.787 36 H 0.172 0.828 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 12.272 -6.946 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.220 4.220 4 N -0.173 5.173 5 C -0.038 4.038 6 N -0.185 5.185 7 C -0.211 4.211 8 C 0.054 3.946 9 N -0.171 5.171 10 C 0.141 3.859 11 C -0.146 4.146 12 C -0.039 4.039 13 C -0.253 4.253 14 C -0.070 4.070 15 C -0.261 4.261 16 C 0.122 3.878 17 O -0.012 6.012 18 C -0.473 4.473 19 H 0.110 0.890 20 C -0.161 4.161 21 N -0.463 5.463 22 Si 0.762 3.238 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 N -0.259 5.259 27 C 0.039 3.961 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.230 0.770 36 H 0.189 0.811 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.149 0.851 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.110 11.902 -6.391 15.757 hybrid contribution 0.023 -0.183 -0.087 0.204 sum -8.087 11.719 -6.477 15.643 Atomic orbital electron populations 1.22179 0.93378 1.03260 1.03128 1.21417 0.95065 0.93612 0.86779 1.22182 1.02344 0.94295 1.03129 1.45189 1.41660 1.22470 1.07997 1.25144 1.00466 1.00261 0.77955 1.70305 1.11855 1.04266 1.32108 1.20662 1.07306 1.01486 0.91626 1.22803 0.86341 0.85313 1.00111 1.68996 1.20812 1.28008 0.99329 1.21115 0.88076 0.87076 0.89615 1.17018 1.08252 0.98805 0.90509 1.20758 0.95407 0.97196 0.90497 1.20497 1.06834 0.99897 0.98049 1.20893 0.95393 0.95433 0.95319 1.21103 1.08227 1.04296 0.92450 1.19271 0.91029 0.91726 0.85788 1.84252 1.62003 1.37399 1.17520 1.21561 1.33144 0.98999 0.93642 0.89006 1.25293 0.97314 0.99077 0.94440 1.70114 1.39977 1.36716 0.99456 0.85707 0.78876 0.80166 0.79033 1.19077 1.20139 1.20136 1.67059 1.14616 1.07155 1.37020 1.18915 0.94881 0.90207 0.92050 0.91722 0.90425 0.91737 0.87589 0.91723 0.91745 0.90425 0.77038 0.81055 0.86007 0.87315 0.87296 0.85117 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.25 37.16 0.34 -0.85 16 2 C 0.13 1.31 3.59 -67.94 -0.24 1.07 16 3 C -0.16 -1.19 9.25 37.16 0.34 -0.84 16 4 N -0.48 -6.56 2.65 -110.45 -0.29 -6.85 16 5 C 0.25 3.16 11.50 -89.51 -1.03 2.13 16 6 N -0.47 -7.89 11.28 -11.90 -0.13 -8.03 16 7 C -0.09 -1.73 7.29 -84.62 -0.62 -2.35 16 8 C 0.23 4.98 11.37 -16.91 -0.19 4.78 16 9 N -0.46 -11.14 8.10 -10.92 -0.09 -11.23 16 10 C 0.40 9.26 7.55 -156.77 -1.18 8.08 16 11 C -0.14 -3.22 5.89 -104.74 -0.62 -3.84 16 12 C -0.02 -0.36 9.55 -39.25 -0.38 -0.73 16 13 C -0.23 -4.10 10.03 -39.59 -0.40 -4.50 16 14 C -0.05 -0.93 10.03 -39.55 -0.40 -1.33 16 15 C -0.24 -5.19 9.16 -39.44 -0.36 -5.55 16 16 C 0.18 4.46 6.65 -38.70 -0.26 4.20 16 17 O -0.11 -3.19 7.53 0.48 0.00 -3.18 16 18 C -0.40 -10.76 9.49 30.89 0.29 -10.47 16 19 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 20 C 0.05 1.23 5.49 -17.51 -0.10 1.13 16 21 N -0.83 -23.30 13.67 55.48 0.76 -22.54 16 22 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 N -0.54 -10.98 9.45 -10.41 -0.10 -11.07 16 27 C 0.28 5.27 8.02 -155.90 -1.25 4.02 16 28 H 0.06 0.39 7.95 -51.93 -0.41 -0.02 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.11 1.18 8.08 -51.93 -0.42 0.76 16 32 H 0.06 0.39 7.95 -51.93 -0.41 -0.02 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.21 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.17 3.41 8.06 -52.49 -0.42 2.99 16 37 H 0.12 2.14 7.49 -52.49 -0.39 1.75 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 40 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -32.85 353.08 -10.31 -43.16 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.72 Total: 4.52 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -6.04 Total: -5.05 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.14 Total: -59.72 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: 0.00 Total: -3.18 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.85 -10.31 -43.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.770 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds