Wall clock time and date at job start Tue Mar 31 2020 14:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47148 * 2 1 4 4 N 1.46490 * 109.47195 * 120.00120 * 2 1 3 5 5 C 1.36288 * 126.27452 * 299.99748 * 4 2 1 6 6 N 1.30161 * 110.10374 * 180.02562 * 5 4 2 7 7 C 1.35498 * 109.48768 * 0.02562 * 6 5 4 8 8 C 1.39735 * 134.62137 * 180.02562 * 7 6 5 9 9 N 1.32018 * 118.72154 * 180.27655 * 8 7 6 10 10 C 1.32956 * 121.25114 * 359.47698 * 9 8 7 11 11 C 1.48112 * 118.92255 * 180.27641 * 10 9 8 12 12 C 1.39385 * 120.16662 * 179.97438 * 11 10 9 13 13 C 1.37968 * 119.93464 * 179.74707 * 12 11 10 14 14 C 1.38475 * 120.28443 * 0.55377 * 13 12 11 15 15 C 1.38083 * 120.34794 * 359.69868 * 14 13 12 16 16 C 1.38787 * 120.05135 * 0.02562 * 15 14 13 17 17 O 1.35619 * 120.13948 * 180.02562 * 16 15 14 18 18 C 1.34819 * 117.00149 * 354.39867 * 17 16 15 19 19 H 1.07998 * 119.99655 * 5.07074 * 18 17 16 20 20 C 1.38664 * 120.00101 * 185.06215 * 18 17 16 21 21 N 1.31555 * 119.99853 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00020 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47039 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47096 * 120.00525 * 22 20 18 25 25 H 1.48499 * 109.47167 * 240.00187 * 22 20 18 26 26 N 1.32533 * 122.15382 * 0.51984 * 10 9 8 27 27 C 1.32443 * 120.39448 * 359.75749 * 26 10 9 28 28 H 1.09003 * 109.47209 * 299.99776 * 1 2 3 29 29 H 1.09006 * 109.46958 * 59.99829 * 1 2 3 30 30 H 1.08991 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47209 * 240.00224 * 2 1 3 32 32 H 1.09003 * 109.47336 * 60.00305 * 3 2 1 33 33 H 1.09003 * 109.47285 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47330 * 299.99943 * 3 2 1 35 35 H 1.07997 * 124.94794 * 359.95499 * 5 4 2 36 36 H 1.07992 * 120.63952 * 0.02562 * 8 7 6 37 37 H 1.07999 * 120.03517 * 359.97438 * 12 11 10 38 38 H 1.07999 * 119.85576 * 180.25626 * 13 12 11 39 39 H 1.08008 * 119.82515 * 179.72622 * 14 13 12 40 40 H 1.08002 * 119.97249 * 180.02562 * 15 14 13 41 41 H 0.96998 * 119.99888 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7692 -0.3382 2.4888 6 7 2.3572 -1.1689 3.3002 7 6 3.0217 -2.1071 2.5832 8 6 3.8068 -3.2166 2.9078 9 7 4.3236 -3.9362 1.9290 10 6 4.1009 -3.6286 0.6549 11 6 4.7013 -4.4751 -0.4019 12 6 4.4842 -4.1767 -1.7460 13 6 5.0501 -4.9654 -2.7265 14 6 5.8244 -6.0603 -2.3814 15 6 6.0427 -6.3698 -1.0536 16 6 5.4850 -5.5828 -0.0557 17 8 5.6988 -5.8848 1.2490 18 6 6.3644 -7.0274 1.5117 19 1 6.7723 -7.6132 0.7013 20 6 6.5256 -7.4503 2.8225 21 7 6.0285 -6.7367 3.8096 22 14 7.4485 -9.0330 3.1865 23 1 7.9051 -9.6440 1.9123 24 1 8.6254 -8.7343 4.0414 25 1 6.5492 -9.9786 3.8951 26 7 3.3631 -2.5866 0.2994 27 6 2.8125 -1.8101 1.2202 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.1719 0.5077 2.7953 36 1 3.9906 -3.4780 3.9393 37 1 3.8767 -3.3268 -2.0197 38 1 4.8844 -4.7305 -3.7675 39 1 6.2601 -6.6753 -3.1551 40 1 6.6480 -7.2250 -0.7913 41 1 6.1416 -7.0323 4.7265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:54 Heat of formation + Delta-G solvation = 93.194914 kcal Electronic energy + Delta-G solvation = -26704.555998 eV Core-core repulsion = 22972.252648 eV Total energy + Delta-G solvation = -3732.303350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.58696 -41.03486 -39.96038 -38.00622 -36.99359 -34.67216 -34.22909 -32.91359 -31.78150 -30.72141 -29.82803 -28.20562 -27.27985 -25.82229 -25.05316 -23.99221 -23.11080 -22.51031 -20.97029 -19.73293 -19.45301 -18.89755 -18.25025 -17.28861 -17.12609 -16.60183 -16.18313 -15.99351 -15.58447 -15.55350 -15.42745 -15.09080 -14.88152 -14.79618 -14.40493 -14.13132 -13.88495 -13.47180 -13.37757 -13.13813 -12.96751 -12.69286 -12.65022 -12.49041 -12.41649 -12.22705 -12.17967 -12.08664 -12.04349 -11.34622 -11.07198 -10.74328 -10.42822 -10.18753 -9.95807 -9.33050 -8.76326 -8.35245 -6.00410 -0.64520 0.18375 0.71423 0.81116 1.20148 1.38623 1.47100 1.55614 1.73269 2.21307 2.71971 2.76838 3.02629 3.07834 3.29942 3.32794 3.43535 3.54321 3.68915 3.93814 3.94192 4.09568 4.16509 4.23175 4.34153 4.48082 4.62289 4.66261 4.68044 4.81486 4.82226 4.86369 5.01507 5.07540 5.17693 5.20716 5.23603 5.25138 5.36255 5.62418 5.69404 5.75261 5.84554 6.07029 6.17733 6.24579 6.61678 7.05215 7.23919 7.89645 8.83575 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.003933 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.383419 B = 7118.244524 C = 8807.450312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 C -0.155 4.155 4 N -0.468 5.468 5 C 0.288 3.712 6 N -0.504 5.504 7 C -0.087 4.087 8 C 0.205 3.795 9 N -0.497 5.497 10 C 0.372 3.628 11 C -0.157 4.157 12 C -0.024 4.024 13 C -0.206 4.206 14 C -0.042 4.042 15 C -0.258 4.258 16 C 0.150 3.850 17 O -0.163 6.163 18 C -0.424 4.424 19 H 0.101 0.899 20 C -0.011 4.011 21 N -0.888 5.888 22 Si 1.012 2.988 23 H -0.252 1.252 24 H -0.271 1.271 25 H -0.272 1.272 26 N -0.524 5.524 27 C 0.263 3.737 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.104 0.896 35 H 0.276 0.724 36 H 0.168 0.832 37 H 0.140 0.860 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.127 0.873 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 14.763 -10.008 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.025 3.975 3 C -0.212 4.212 4 N -0.163 5.163 5 C 0.002 3.998 6 N -0.224 5.224 7 C -0.209 4.209 8 C 0.029 3.971 9 N -0.212 5.212 10 C 0.109 3.891 11 C -0.162 4.162 12 C -0.044 4.044 13 C -0.225 4.225 14 C -0.060 4.060 15 C -0.277 4.277 16 C 0.093 3.907 17 O -0.063 6.063 18 C -0.500 4.500 19 H 0.118 0.882 20 C -0.212 4.212 21 N -0.523 5.523 22 Si 0.832 3.168 23 H -0.175 1.175 24 H -0.197 1.197 25 H -0.197 1.197 26 N -0.245 5.245 27 C 0.018 3.982 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.123 0.877 35 H 0.292 0.708 36 H 0.185 0.815 37 H 0.158 0.842 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.145 0.855 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.952 14.437 -9.529 19.957 hybrid contribution 0.316 -0.551 0.571 0.854 sum -9.636 13.886 -8.958 19.129 Atomic orbital electron populations 1.22178 0.90844 1.02591 1.05632 1.21834 0.96901 0.94439 0.84374 1.22180 1.00935 0.92496 1.05632 1.45667 1.40004 1.20705 1.09885 1.26460 0.97166 0.99339 0.76799 1.70347 1.13839 1.05163 1.33043 1.20677 1.06416 1.01046 0.92731 1.22774 0.87918 0.86752 0.99695 1.68907 1.22227 1.29566 1.00460 1.21248 0.89878 0.88544 0.89436 1.17497 1.08041 0.98470 0.92141 1.21063 0.95813 0.98186 0.89319 1.21082 1.03653 0.97865 0.99856 1.21373 0.94344 0.95706 0.94595 1.21273 1.08577 1.04177 0.93650 1.19884 0.91989 0.92946 0.85885 1.84267 1.64558 1.38344 1.19178 1.21999 1.33915 0.99719 0.94402 0.88205 1.26454 0.98226 1.02592 0.93952 1.70279 1.43078 1.39204 0.99728 0.84625 0.77360 0.75594 0.79198 1.17507 1.19672 1.19741 1.67036 1.13798 1.06502 1.37154 1.19258 0.95828 0.91685 0.91473 0.89459 0.87735 0.93950 0.89332 0.89460 0.93935 0.87740 0.70838 0.81517 0.84243 0.82532 0.82855 0.85531 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.25 71.98 0.67 -0.95 16 2 C 0.12 2.04 3.59 44.99 0.16 2.20 16 3 C -0.15 -1.60 9.25 71.98 0.67 -0.94 16 4 N -0.47 -11.81 2.65 -503.35 -1.33 -13.14 16 5 C 0.29 6.37 11.50 179.96 2.07 8.44 16 6 N -0.50 -16.67 11.28 -191.57 -2.16 -18.83 16 7 C -0.09 -3.51 7.29 39.63 0.29 -3.22 16 8 C 0.20 9.63 11.37 85.03 0.97 10.59 16 9 N -0.50 -26.48 8.10 -188.45 -1.53 -28.01 16 10 C 0.37 18.20 7.55 137.38 1.04 19.24 16 11 C -0.16 -7.47 5.89 -19.94 -0.12 -7.59 16 12 C -0.02 -0.90 9.55 22.48 0.21 -0.69 16 13 C -0.21 -6.49 10.03 22.26 0.22 -6.27 16 14 C -0.04 -1.40 10.03 22.29 0.22 -1.17 16 15 C -0.26 -11.26 9.16 22.36 0.20 -11.05 16 16 C 0.15 7.76 6.65 22.84 0.15 7.91 16 17 O -0.16 -9.83 7.53 -21.18 -0.16 -9.99 16 18 C -0.42 -24.71 9.49 67.92 0.64 -24.07 16 19 H 0.10 5.33 5.21 -2.91 -0.02 5.32 16 20 C -0.01 -0.65 5.49 84.84 0.47 -0.18 16 21 N -0.89 -54.11 13.67 21.62 0.30 -53.81 16 22 Si 1.01 43.23 29.55 68.60 2.03 45.26 16 23 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 N -0.52 -22.04 9.45 -186.86 -1.77 -23.80 16 27 C 0.26 9.88 8.02 134.11 1.08 10.95 16 28 H 0.09 0.54 7.95 -2.39 -0.02 0.52 16 29 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 1.79 8.08 -2.39 -0.02 1.77 16 32 H 0.09 0.54 7.95 -2.39 -0.02 0.52 16 33 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.28 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.17 7.56 8.06 -2.91 -0.02 7.54 16 37 H 0.14 4.67 7.49 -2.91 -0.02 4.64 16 38 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.13 5.52 5.64 -2.91 -0.02 5.50 16 41 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -82.70 353.08 5.39 -77.31 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 1.07 Total: 21.80 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 8.94 Total: 3.21 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -6.49 Total: -137.59 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.16 Total: -9.99 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -82.70 5.39 -77.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.507 kcal (2) G-P(sol) polarization free energy of solvation -82.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds