Wall clock time and date at job start Tue Mar 31 2020 14:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46928 * 2 1 4 4 N 1.46497 * 109.47607 * 120.00315 * 2 1 3 5 5 C 1.36278 * 126.27233 * 300.02818 * 4 2 1 6 6 N 1.30163 * 110.10670 * 179.73706 * 5 4 2 7 7 C 1.35502 * 109.48363 * 359.97438 * 6 5 4 8 8 C 1.39729 * 134.62429 * 180.02562 * 7 6 5 9 9 N 1.32017 * 118.72114 * 180.02562 * 8 7 6 10 10 C 1.32944 * 121.25262 * 359.97438 * 9 8 7 11 11 C 1.48161 * 118.92073 * 179.97438 * 10 9 8 12 12 C 1.39518 * 120.05601 * 179.72560 * 11 10 9 13 13 C 1.37791 * 119.94219 * 179.78585 * 12 11 10 14 14 C 1.39038 * 120.05258 * 0.48678 * 13 12 11 15 15 O 1.35663 * 119.93666 * 179.71791 * 14 13 12 16 16 C 1.34814 * 116.99663 * 174.47391 * 15 14 13 17 17 H 1.08000 * 120.00575 * 5.06009 * 16 15 14 18 18 C 1.38662 * 120.00087 * 185.05766 * 16 15 14 19 19 N 1.31552 * 120.00237 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00251 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47013 * 60.00052 * 20 18 16 22 22 H 1.48495 * 109.47038 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47042 * 300.00255 * 20 18 16 24 24 C 1.39037 * 120.12012 * 359.74778 * 14 13 12 25 25 C 1.37781 * 120.05575 * 0.02562 * 24 14 13 26 26 N 1.32524 * 122.15668 * 0.02562 * 10 9 8 27 27 C 1.32447 * 120.39186 * 359.97438 * 26 10 9 28 28 H 1.08999 * 109.46993 * 299.99554 * 1 2 3 29 29 H 1.08995 * 109.47506 * 59.99979 * 1 2 3 30 30 H 1.09004 * 109.46728 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46993 * 240.00446 * 2 1 3 32 32 H 1.09003 * 109.47403 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47646 * 300.00310 * 3 2 1 34 34 H 1.08999 * 109.46919 * 60.00401 * 3 2 1 35 35 H 1.07999 * 124.94784 * 359.71284 * 5 4 2 36 36 H 1.08000 * 120.63715 * 0.02562 * 8 7 6 37 37 H 1.07999 * 120.02748 * 0.02562 * 12 11 10 38 38 H 1.07995 * 119.96991 * 180.22888 * 13 12 11 39 39 H 0.96998 * 120.00587 * 179.97438 * 19 18 16 40 40 H 1.07992 * 119.96932 * 179.97438 * 24 14 13 41 41 H 1.08003 * 120.03412 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7689 -0.3386 2.4887 6 7 2.3521 -1.1727 3.3002 7 6 3.0128 -2.1137 2.5831 8 6 3.7921 -3.2272 2.9075 9 7 4.3021 -3.9515 1.9286 10 6 4.0860 -3.6391 0.6546 11 6 4.6840 -4.4875 -0.4025 12 6 4.4678 -4.1848 -1.7472 13 6 5.0287 -4.9729 -2.7285 14 6 5.8013 -6.0749 -2.3795 15 8 6.3477 -6.8525 -3.3475 16 6 7.1783 -7.8358 -2.9465 17 1 7.3183 -8.0284 -1.8930 18 6 7.8528 -8.6001 -3.8865 19 7 7.6827 -8.3654 -5.1697 20 14 9.0031 -9.9630 -3.3308 21 1 8.2414 -10.9606 -2.5371 22 1 9.5970 -10.6250 -4.5200 23 1 10.0856 -9.3865 -2.4935 24 6 6.0144 -6.3817 -1.0402 25 6 5.4596 -5.5941 -0.0552 26 7 3.3540 -2.5930 0.2993 27 6 2.8062 -1.8146 1.2202 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9562 0.8900 35 1 1.1742 0.5091 2.7953 36 1 3.9736 -3.4902 3.9391 37 1 3.8645 -3.3312 -2.0187 38 1 4.8647 -4.7368 -3.7694 39 1 8.1548 -8.8998 -5.8272 40 1 6.6145 -7.2385 -0.7719 41 1 5.6256 -5.8325 0.9851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588937.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:58 Heat of formation + Delta-G solvation = 98.768582 kcal Electronic energy + Delta-G solvation = -25635.489650 eV Core-core repulsion = 21903.427992 eV Total energy + Delta-G solvation = -3732.061658 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62451 -39.63845 -38.81262 -36.58971 -36.11022 -33.64414 -32.49306 -31.03544 -30.97200 -30.17559 -28.16378 -27.80666 -25.63532 -24.57675 -23.78640 -23.17086 -21.84068 -21.02335 -20.11518 -18.29176 -18.17008 -17.73820 -17.00765 -16.21230 -16.16217 -15.46307 -14.87673 -14.60959 -14.45644 -14.39306 -14.19529 -13.93230 -13.73318 -13.53906 -13.20447 -12.84565 -12.75704 -12.74572 -12.49120 -11.99069 -11.80730 -11.78161 -11.53353 -11.40111 -11.29359 -11.10294 -10.91806 -10.74067 -10.51895 -10.41475 -9.44840 -9.38943 -9.07868 -8.93324 -8.63749 -8.25138 -7.14272 -6.58948 -4.14259 0.51967 1.24521 2.06959 2.15904 2.25005 2.72188 3.08495 3.10116 3.12327 3.82784 3.87654 3.96337 3.97681 4.11170 4.26798 4.43178 4.56185 4.61976 4.63246 4.72909 4.99114 4.99980 5.06993 5.15811 5.18880 5.27144 5.42541 5.52428 5.63980 5.69206 5.76020 5.80835 6.01405 6.17859 6.33687 6.38334 6.57978 6.67939 6.86527 6.94293 7.09191 7.22808 7.29968 7.34256 7.54357 7.71415 7.86842 8.31311 8.85938 9.53108 10.57746 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.002459 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.750073 B =11385.413511 C =12322.273729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 C -0.162 4.162 4 N -0.474 5.474 5 C 0.258 3.742 6 N -0.469 5.469 7 C -0.088 4.088 8 C 0.228 3.772 9 N -0.520 5.520 10 C 0.414 3.586 11 C -0.160 4.160 12 C -0.020 4.020 13 C -0.205 4.205 14 C 0.172 3.828 15 O -0.164 6.164 16 C -0.392 4.392 17 H 0.097 0.903 18 C 0.041 3.959 19 N -0.854 5.854 20 Si 0.944 3.056 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.246 4.246 25 C -0.013 4.013 26 N -0.528 5.528 27 C 0.290 3.710 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.217 0.783 36 H 0.173 0.827 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.274 0.726 40 H 0.133 0.867 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 16.518 11.545 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.220 4.220 4 N -0.169 5.169 5 C -0.029 4.029 6 N -0.188 5.188 7 C -0.211 4.211 8 C 0.051 3.949 9 N -0.235 5.235 10 C 0.153 3.847 11 C -0.164 4.164 12 C -0.040 4.040 13 C -0.224 4.224 14 C 0.115 3.885 15 O -0.064 6.064 16 C -0.467 4.467 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.487 5.487 20 Si 0.768 3.232 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.193 1.193 24 C -0.266 4.266 25 C -0.033 4.033 26 N -0.248 5.248 27 C 0.045 3.955 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.233 0.767 36 H 0.190 0.810 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.084 0.916 40 H 0.151 0.849 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.558 15.959 11.033 22.583 hybrid contribution 0.075 0.019 0.089 0.118 sum -11.482 15.978 11.122 22.602 Atomic orbital electron populations 1.22189 0.93081 1.03364 1.03378 1.21517 0.95292 0.93792 0.86488 1.22186 1.02391 0.94051 1.03376 1.45308 1.41311 1.21951 1.08312 1.25248 0.99762 0.99993 0.77857 1.70335 1.12246 1.04205 1.31989 1.20513 1.07429 1.01409 0.91702 1.22562 0.86973 0.85977 0.99403 1.68480 1.23835 1.30698 1.00489 1.21165 0.87550 0.87069 0.88942 1.17455 1.09289 0.99634 0.89974 1.20712 0.95357 0.97093 0.90841 1.20136 1.05643 0.97152 0.99481 1.19590 0.91026 0.89417 0.88435 1.83937 1.52453 1.38720 1.31313 1.21427 1.21450 1.09526 0.94333 0.88545 1.25376 0.97629 0.98722 0.94740 1.70024 1.39843 1.38624 1.00255 0.85725 0.79551 0.79565 0.78356 1.19255 1.20167 1.19252 1.21101 1.08847 1.04437 0.92174 1.20875 0.91966 0.91420 0.99027 1.67157 1.14055 1.06752 1.36824 1.19008 0.94514 0.89995 0.91947 0.91675 0.90117 0.91684 0.87297 0.91673 0.90123 0.91672 0.76691 0.80952 0.85851 0.86016 0.91637 0.84945 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.25 37.16 0.34 -0.56 16 2 C 0.13 1.02 3.59 -67.93 -0.24 0.77 16 3 C -0.16 -0.91 9.25 37.16 0.34 -0.56 16 4 N -0.47 -5.14 2.65 -110.45 -0.29 -5.43 16 5 C 0.26 2.45 11.50 -89.52 -1.03 1.42 16 6 N -0.47 -6.01 11.28 -11.91 -0.13 -6.15 16 7 C -0.09 -1.29 7.29 -84.62 -0.62 -1.91 16 8 C 0.23 3.25 11.37 -16.92 -0.19 3.06 16 9 N -0.52 -8.70 9.39 -10.91 -0.10 -8.80 16 10 C 0.41 7.48 7.55 -156.77 -1.18 6.29 16 11 C -0.16 -3.07 5.88 -104.87 -0.62 -3.69 16 12 C -0.02 -0.38 9.55 -39.27 -0.37 -0.75 16 13 C -0.20 -4.29 9.98 -39.45 -0.39 -4.68 16 14 C 0.17 4.06 6.65 -38.99 -0.26 3.80 16 15 O -0.16 -4.51 9.75 0.36 0.00 -4.51 16 16 C -0.39 -10.56 9.48 30.89 0.29 -10.26 16 17 H 0.10 2.39 5.19 -52.49 -0.27 2.11 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.85 -24.23 13.67 55.48 0.76 -23.47 16 20 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 C -0.25 -5.29 9.15 -39.45 -0.36 -5.65 16 25 C -0.01 -0.25 9.55 -39.27 -0.37 -0.62 16 26 N -0.53 -8.97 9.44 -10.41 -0.10 -9.07 16 27 C 0.29 4.34 8.02 -155.91 -1.25 3.09 16 28 H 0.06 0.27 7.94 -51.93 -0.41 -0.14 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.27 7.95 -51.93 -0.41 -0.14 16 35 H 0.22 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 2.11 7.49 -52.49 -0.39 1.72 16 38 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.13 2.79 5.62 -52.49 -0.30 2.49 16 41 H 0.12 2.19 7.49 -52.48 -0.39 1.80 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -32.56 355.40 -10.24 -42.80 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.69 Total: 3.73 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -6.01 Total: -9.25 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.13 Total: -52.92 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: 0.00 Total: -4.51 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.56 -10.24 -42.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588937.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.571 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds