Wall clock time and date at job start Tue Mar 31 2020 14:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 N 1.46501 * 109.47161 * 179.97438 * 3 2 1 5 5 C 1.38067 * 126.47480 * 85.34039 * 4 3 2 6 6 C 1.38761 * 133.92576 * 359.97438 * 5 4 3 7 7 C 1.38107 * 119.71112 * 180.02562 * 6 5 4 8 8 F 1.35103 * 119.78884 * 179.97438 * 7 6 5 9 9 C 1.39070 * 120.43387 * 0.02562 * 7 6 5 10 10 C 1.36495 * 120.67219 * 359.95207 * 9 7 6 11 11 C 1.40066 * 119.91734 * 0.04645 * 10 9 7 12 12 N 1.34750 * 133.27350 * 179.66095 * 11 10 9 13 13 C 1.31324 * 109.75954 * 179.91813 * 12 11 10 14 14 C 1.47267 * 125.17204 * 180.14947 * 13 12 11 15 15 C 1.39429 * 120.36205 * 130.59171 * 14 13 12 16 16 C 1.37981 * 119.96368 * 179.72517 * 15 14 13 17 17 C 1.38989 * 120.70243 * 0.58938 * 16 15 14 18 18 C 1.36407 * 120.73838 * 359.68521 * 17 16 15 19 19 C 1.40770 * 120.00504 * 0.02562 * 18 17 16 20 20 C 1.40752 * 120.34631 * 179.97438 * 19 18 17 21 21 H 1.07993 * 120.00014 * 150.30692 * 20 19 18 22 22 C 1.40143 * 119.99490 * 330.30679 * 20 19 18 23 23 N 1.30716 * 120.00354 * 349.10807 * 22 20 19 24 24 Si 1.86801 * 119.99391 * 169.10340 * 22 20 19 25 25 H 1.48504 * 109.47316 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46815 * 120.00183 * 24 22 20 27 27 H 1.48496 * 109.47267 * 240.00131 * 24 22 20 28 28 H 1.09009 * 109.47260 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47422 * 299.99889 * 1 2 3 30 30 H 1.08994 * 109.47429 * 60.00277 * 1 2 3 31 31 H 1.08997 * 109.46823 * 239.99565 * 2 1 3 32 32 H 1.09006 * 109.46992 * 119.99770 * 2 1 3 33 33 H 1.08996 * 109.47046 * 59.99695 * 3 2 1 34 34 H 1.09000 * 109.46620 * 299.99701 * 3 2 1 35 35 H 1.08007 * 120.14390 * 0.04995 * 6 5 4 36 36 H 1.08005 * 119.66646 * 179.97438 * 9 7 6 37 37 H 1.08003 * 120.03921 * 180.02562 * 10 9 7 38 38 H 1.08004 * 120.02005 * 0.02562 * 15 14 13 39 39 H 1.07997 * 119.65385 * 180.27588 * 16 15 14 40 40 H 1.08001 * 119.62915 * 179.72109 * 17 16 15 41 41 H 1.08000 * 119.99728 * 180.02562 * 18 17 16 42 42 H 0.97005 * 119.99721 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3262 1.3522 -1.1056 6 6 4.0954 1.2404 -2.4693 7 6 5.1643 1.1689 -3.3408 8 9 4.9414 1.0595 -4.6688 9 6 6.4688 1.2076 -2.8604 10 6 6.7150 1.3177 -1.5223 11 6 5.6470 1.3919 -0.6193 12 7 5.5773 1.4965 0.7224 13 6 4.3201 1.5323 1.1002 14 6 3.8558 1.6460 2.4931 15 6 2.8948 2.5946 2.8405 16 6 2.4615 2.6902 4.1470 17 6 2.9821 1.8569 5.1301 18 6 3.9274 0.9226 4.8232 19 6 4.3869 0.7947 3.4988 20 6 5.3626 -0.1665 3.1743 21 1 5.3808 -0.6057 2.1879 22 6 6.3103 -0.5535 4.1313 23 7 6.4275 0.1207 5.2451 24 14 7.4060 -2.0331 3.8154 25 1 7.0776 -2.6185 2.4907 26 1 8.8287 -1.6073 3.8289 27 1 7.1833 -3.0493 4.8750 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9562 -0.8900 35 1 3.0842 1.2099 -2.8475 36 1 7.2955 1.1503 -3.5530 37 1 7.7322 1.3473 -1.1604 38 1 2.4861 3.2509 2.0864 39 1 1.7137 3.4237 4.4096 40 1 2.6337 1.9497 6.1481 41 1 4.3234 0.2810 5.5965 42 1 7.0833 -0.1475 5.9076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251427104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:52 Heat of formation + Delta-G solvation = 34.822153 kcal Electronic energy + Delta-G solvation = -27013.200580 eV Core-core repulsion = 23258.446035 eV Total energy + Delta-G solvation = -3754.754545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.64157 -41.59219 -37.80154 -36.63082 -35.22597 -33.83017 -32.20205 -30.84046 -30.06113 -29.56042 -27.75230 -26.21159 -25.50165 -23.07870 -22.26304 -21.58597 -21.00984 -20.82667 -19.34656 -17.52062 -17.41495 -16.78312 -16.23398 -15.56926 -15.40043 -15.12857 -14.93829 -14.76519 -14.60474 -14.04644 -13.76751 -13.45250 -13.20227 -12.93739 -12.85942 -12.71587 -12.26064 -12.11551 -12.09582 -11.78824 -11.51456 -11.32331 -11.20786 -11.06715 -10.95741 -10.75127 -10.71497 -10.53908 -9.97363 -9.80573 -9.69860 -9.36800 -9.17085 -8.15002 -7.84199 -7.57760 -7.24486 -6.88505 -4.50665 1.14023 1.71082 2.41427 2.70942 3.00162 3.03493 3.10471 3.13181 3.47678 3.86904 4.21299 4.46989 4.51151 4.74053 4.80869 4.93274 4.99030 5.19249 5.25613 5.32267 5.43478 5.50124 5.59267 5.70177 5.73256 5.76747 5.93280 5.99199 6.07091 6.13576 6.20022 6.25767 6.29863 6.46937 6.48913 6.74564 6.89354 6.90161 6.98482 7.11419 7.23244 7.32974 7.53013 7.68822 7.88629 7.88844 8.06358 8.44479 8.63658 8.69151 8.76557 10.02398 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.010234 B = 0.005263 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.446464 B = 5319.108152 C = 6966.771776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.110 3.890 4 N -0.493 5.493 5 C 0.052 3.948 6 C -0.140 4.140 7 C 0.086 3.914 8 F -0.146 7.146 9 C -0.164 4.164 10 C -0.045 4.045 11 C 0.054 3.946 12 N -0.478 5.478 13 C 0.398 3.602 14 C -0.184 4.184 15 C -0.060 4.060 16 C -0.242 4.242 17 C -0.094 4.094 18 C -0.148 4.148 19 C 0.148 3.852 20 C -0.416 4.416 21 H 0.081 0.919 22 C 0.077 3.923 23 N -0.783 5.783 24 Si 0.912 3.088 25 H -0.259 1.259 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 0.027 -8.622 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C -0.012 4.012 4 N -0.182 5.182 5 C -0.059 4.059 6 C -0.162 4.162 7 C 0.066 3.934 8 F -0.125 7.125 9 C -0.185 4.185 10 C -0.064 4.064 11 C -0.068 4.068 12 N -0.195 5.195 13 C 0.139 3.861 14 C -0.188 4.188 15 C -0.080 4.080 16 C -0.262 4.262 17 C -0.113 4.113 18 C -0.168 4.168 19 C 0.143 3.857 20 C -0.444 4.444 21 H 0.099 0.901 22 C -0.143 4.143 23 N -0.407 5.407 24 Si 0.736 3.264 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.141 0.859 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.211 0.071 -7.944 9.500 hybrid contribution -0.194 -0.573 -0.886 1.073 sum -5.405 -0.502 -8.830 10.365 Atomic orbital electron populations 1.21673 0.94659 1.02150 1.01929 1.21885 0.96374 0.96126 1.03473 1.21889 0.76662 0.98504 1.04146 1.45863 1.06551 1.60469 1.05290 1.18454 0.92059 1.06771 0.88635 1.19544 0.98505 1.08472 0.89677 1.17057 0.93424 1.06185 0.76782 1.91444 1.95649 1.94003 1.31378 1.20432 0.94987 1.07127 0.95946 1.19857 0.97963 0.98150 0.90464 1.19255 0.91556 1.04396 0.91639 1.70844 1.17342 1.23017 1.08281 1.21916 0.83632 0.92517 0.88026 1.17412 1.08904 1.05274 0.87235 1.20466 0.95800 0.96120 0.95619 1.20201 1.07043 1.05656 0.93260 1.20543 0.97220 0.96351 0.97137 1.21110 0.97714 1.00627 0.97298 1.17414 0.89305 0.88856 0.90100 1.19591 1.08869 1.17369 0.98588 0.90087 1.25965 0.97599 0.96854 0.93884 1.69738 1.29529 1.34512 1.06938 0.86178 0.79727 0.80699 0.79809 1.18262 1.19553 1.19670 0.92222 0.92099 0.92814 0.91795 0.90450 0.88034 0.90303 0.85736 0.84901 0.84738 0.89346 0.88983 0.89043 0.85906 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.14 -1.89 6.26 -26.73 -0.17 -2.05 16 3 C 0.11 1.60 5.98 -4.04 -0.02 1.57 16 4 N -0.49 -9.14 2.84 -111.74 -0.32 -9.46 16 5 C 0.05 0.95 6.87 -83.89 -0.58 0.37 16 6 C -0.14 -2.21 10.02 -39.44 -0.40 -2.60 16 7 C 0.09 1.32 7.30 -39.32 -0.29 1.03 16 8 F -0.15 -2.13 17.26 2.25 0.04 -2.09 16 9 C -0.16 -2.40 9.94 -39.90 -0.40 -2.79 16 10 C -0.04 -0.76 10.06 -39.53 -0.40 -1.15 16 11 C 0.05 1.09 7.20 -84.93 -0.61 0.48 16 12 N -0.48 -11.20 10.26 -8.85 -0.09 -11.29 16 13 C 0.40 8.82 6.43 -154.36 -0.99 7.83 16 14 C -0.18 -4.24 5.65 -104.32 -0.59 -4.83 16 15 C -0.06 -1.24 8.33 -39.23 -0.33 -1.57 16 16 C -0.24 -4.88 10.03 -39.40 -0.40 -5.27 16 17 C -0.09 -1.99 9.96 -39.96 -0.40 -2.39 16 18 C -0.15 -3.54 8.59 -39.29 -0.34 -3.88 16 19 C 0.15 3.70 5.56 -106.53 -0.59 3.11 16 20 C -0.42 -10.63 7.98 -37.92 -0.30 -10.93 16 21 H 0.08 2.14 7.07 -52.49 -0.37 1.77 16 22 C 0.08 1.86 5.24 -17.31 -0.09 1.77 16 23 N -0.78 -19.26 10.91 55.56 0.61 -18.65 16 24 Si 0.91 18.66 29.57 -169.99 -5.03 13.63 16 25 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.10 1.48 5.41 -51.93 -0.28 1.20 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.13 2.04 8.06 -52.48 -0.42 1.62 16 38 H 0.09 1.61 7.08 -52.48 -0.37 1.24 16 39 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.12 3.01 6.29 -52.49 -0.33 2.68 16 42 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -27.37 356.77 -11.07 -38.43 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.14 Total: 6.52 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -6.51 Total: -22.47 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.20 Total: -39.40 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.37 -11.07 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251427104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.257 kcal (2) G-P(sol) polarization free energy of solvation -27.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds