Wall clock time and date at job start Tue Mar 31 2020 14:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47148 * 2 1 4 4 N 1.46500 * 109.47238 * 180.02562 * 3 2 1 5 5 C 1.38174 * 126.48058 * 85.28063 * 4 3 2 6 6 C 1.38768 * 133.83196 * 359.97438 * 5 4 3 7 7 C 1.37865 * 119.89678 * 180.02562 * 6 5 4 8 8 C 1.39071 * 120.45999 * 359.97438 * 7 6 5 9 9 F 1.35103 * 119.73771 * 180.02562 * 8 7 6 10 10 C 1.37687 * 120.51114 * 0.02769 * 8 7 6 11 11 C 1.40060 * 119.75466 * 359.97438 * 10 8 7 12 12 N 1.34745 * 133.26876 * 180.02562 * 11 10 8 13 13 C 1.31340 * 109.76660 * 179.72301 * 12 11 10 14 14 C 1.47291 * 125.16600 * 180.30577 * 13 12 11 15 15 C 1.39406 * 120.35794 * 130.50365 * 14 13 12 16 16 C 1.38007 * 119.96010 * 179.69860 * 15 14 13 17 17 C 1.38976 * 120.70381 * 0.58507 * 16 15 14 18 18 C 1.36414 * 120.72946 * 359.71520 * 17 16 15 19 19 C 1.40772 * 120.00994 * 359.97438 * 18 17 16 20 20 C 1.40755 * 120.34697 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99898 * 150.31899 * 20 19 18 22 22 C 1.40153 * 120.00071 * 330.32363 * 20 19 18 23 23 N 1.30714 * 119.99852 * 349.11601 * 22 20 19 24 24 Si 1.86800 * 120.00052 * 169.11698 * 22 20 19 25 25 H 1.48504 * 109.47061 * 59.99874 * 24 22 20 26 26 H 1.48504 * 109.46762 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47024 * 299.99725 * 24 22 20 28 28 H 1.08997 * 109.47197 * 59.99804 * 1 2 3 29 29 H 1.08996 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.09011 * 109.47089 * 300.00017 * 1 2 3 31 31 H 1.08997 * 109.47038 * 119.99665 * 2 1 3 32 32 H 1.08998 * 109.47321 * 239.99759 * 2 1 3 33 33 H 1.08997 * 109.47231 * 300.00175 * 3 2 1 34 34 H 1.09000 * 109.47363 * 60.00453 * 3 2 1 35 35 H 1.08000 * 120.05566 * 359.97438 * 6 5 4 36 36 H 1.07999 * 119.76890 * 179.97438 * 7 6 5 37 37 H 1.08007 * 120.12014 * 179.97438 * 10 8 7 38 38 H 1.08001 * 120.02131 * 359.97438 * 15 14 13 39 39 H 1.08003 * 119.65099 * 180.30203 * 16 15 14 40 40 H 1.07991 * 119.63484 * 179.74469 * 17 16 15 41 41 H 1.08006 * 119.99623 * 180.02562 * 18 17 16 42 42 H 0.96998 * 119.99982 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3260 1.3513 -1.1082 6 6 4.0920 1.2385 -2.4713 7 6 5.1541 1.1660 -3.3473 8 6 6.4615 1.2056 -2.8749 9 9 7.4914 1.1340 -3.7463 10 6 6.7143 1.3172 -1.5260 11 6 5.6466 1.3919 -0.6226 12 7 5.5777 1.5033 0.7185 13 6 4.3205 1.5404 1.0970 14 6 3.8572 1.6643 2.4897 15 6 2.8968 2.6154 2.8307 16 6 2.4640 2.7202 4.1370 17 6 2.9846 1.8935 5.1255 18 6 3.9300 0.9573 4.8246 19 6 4.3885 0.8198 3.5008 20 6 5.3642 -0.1435 3.1826 21 1 5.3819 -0.5897 2.1992 22 6 6.3126 -0.5238 4.1418 23 7 6.4303 0.1582 5.2507 24 14 7.4087 -2.0051 3.8355 25 1 8.2114 -1.7813 2.6064 26 1 8.3193 -2.1948 4.9932 27 1 6.5671 -3.2164 3.6635 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9564 0.8900 35 1 3.0793 1.2067 -2.8455 36 1 4.9695 1.0778 -4.4077 37 1 7.7322 1.3469 -1.1660 38 1 2.4883 3.2668 2.0723 39 1 1.7161 3.4555 4.3947 40 1 2.6365 1.9932 6.1429 41 1 4.3262 0.3208 5.6021 42 1 7.0869 -0.1047 5.9144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251427171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:58 Heat of formation + Delta-G solvation = 34.904301 kcal Electronic energy + Delta-G solvation = -26985.005411 eV Core-core repulsion = 23230.254428 eV Total energy + Delta-G solvation = -3754.750982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.55965 -41.58680 -37.79346 -36.56343 -35.27586 -33.83375 -32.19241 -30.83159 -29.91128 -29.54629 -27.93749 -26.17513 -25.48900 -23.12306 -22.19766 -21.61645 -21.01456 -20.80327 -19.32807 -17.49193 -17.38338 -16.89989 -16.22032 -15.52330 -15.35121 -15.02594 -14.98638 -14.75335 -14.54856 -14.02839 -13.76292 -13.41911 -13.29473 -13.00934 -12.77906 -12.70384 -12.26785 -12.19611 -11.95508 -11.81774 -11.49509 -11.33556 -11.21182 -11.09961 -10.96543 -10.78710 -10.73006 -10.56098 -9.92622 -9.81246 -9.73876 -9.34889 -9.16218 -8.12576 -7.73713 -7.58569 -7.32673 -6.89004 -4.51219 1.15505 1.65937 2.42846 2.72714 3.02284 3.04152 3.06995 3.16527 3.49287 3.87119 4.18598 4.42034 4.51679 4.71381 4.79480 4.93064 5.09298 5.17411 5.24886 5.29953 5.41826 5.49326 5.56777 5.69817 5.76238 5.85961 5.92188 5.97913 5.99887 6.10125 6.20178 6.27157 6.28298 6.40427 6.47541 6.75928 6.88238 6.90516 6.98015 7.11619 7.23927 7.32403 7.52864 7.68034 7.87820 7.88360 8.05876 8.43538 8.62814 8.68509 8.75814 10.02236 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.009312 B = 0.005573 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.305630 B = 5023.266357 C = 6915.249108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.111 3.889 4 N -0.494 5.494 5 C 0.020 3.980 6 C -0.076 4.076 7 C -0.159 4.159 8 C 0.081 3.919 9 F -0.146 7.146 10 C -0.112 4.112 11 C 0.088 3.912 12 N -0.483 5.483 13 C 0.405 3.595 14 C -0.186 4.186 15 C -0.060 4.060 16 C -0.242 4.242 17 C -0.093 4.093 18 C -0.148 4.148 19 C 0.148 3.852 20 C -0.416 4.416 21 H 0.080 0.920 22 C 0.077 3.923 23 N -0.783 5.783 24 Si 0.911 3.089 25 H -0.260 1.260 26 H -0.276 1.276 27 H -0.263 1.263 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 -0.084 -9.120 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C -0.011 4.011 4 N -0.183 5.183 5 C -0.089 4.089 6 C -0.097 4.097 7 C -0.179 4.179 8 C 0.060 3.940 9 F -0.125 7.125 10 C -0.133 4.133 11 C -0.035 4.035 12 N -0.200 5.200 13 C 0.146 3.854 14 C -0.190 4.190 15 C -0.079 4.079 16 C -0.262 4.262 17 C -0.112 4.112 18 C -0.167 4.167 19 C 0.144 3.856 20 C -0.444 4.444 21 H 0.098 0.902 22 C -0.143 4.143 23 N -0.407 5.407 24 Si 0.735 3.265 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.188 1.188 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.141 0.859 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.811 -0.035 -8.422 10.831 hybrid contribution 0.103 -0.575 -0.784 0.978 sum -6.707 -0.610 -9.207 11.407 Atomic orbital electron populations 1.21673 0.94683 1.02135 1.01929 1.21883 0.96335 0.96157 1.03468 1.21876 0.76675 0.98452 1.04127 1.45878 1.06523 1.60535 1.05404 1.18922 0.91974 1.08653 0.89386 1.19602 0.98736 1.02505 0.88832 1.20592 0.90350 1.07089 0.99871 1.17094 0.84004 1.06411 0.86537 1.91450 1.57939 1.94334 1.68797 1.20043 0.99018 1.04309 0.89883 1.18792 0.90899 1.02333 0.91466 1.70874 1.17400 1.23655 1.08109 1.21949 0.83611 0.91704 0.88162 1.17409 1.09011 1.05413 0.87186 1.20460 0.95755 0.96072 0.95638 1.20203 1.07071 1.05717 0.93205 1.20541 0.97203 0.96353 0.97126 1.21112 0.97711 1.00616 0.97300 1.17398 0.89258 0.88875 0.90096 1.19534 1.08893 1.17329 0.98691 0.90179 1.25962 0.97571 0.96865 0.93860 1.69716 1.29491 1.34470 1.06993 0.86289 0.79791 0.81130 0.79307 1.18455 1.20073 1.18764 0.92816 0.92241 0.92108 0.90498 0.91773 0.90300 0.88087 0.85918 0.84935 0.84606 0.89330 0.88970 0.89030 0.85906 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.14 -1.82 6.26 -26.73 -0.17 -1.99 16 3 C 0.11 1.56 5.98 -4.04 -0.02 1.53 16 4 N -0.49 -9.02 2.84 -111.73 -0.32 -9.34 16 5 C 0.02 0.36 6.87 -83.85 -0.58 -0.21 16 6 C -0.08 -1.10 10.03 -39.52 -0.40 -1.50 16 7 C -0.16 -2.22 10.01 -39.41 -0.39 -2.61 16 8 C 0.08 1.30 7.28 -39.47 -0.29 1.01 16 9 F -0.15 -2.28 17.26 2.25 0.04 -2.24 16 10 C -0.11 -2.05 10.08 -39.10 -0.39 -2.44 16 11 C 0.09 1.81 7.20 -84.95 -0.61 1.20 16 12 N -0.48 -11.48 10.27 -8.87 -0.09 -11.57 16 13 C 0.40 8.96 6.43 -154.40 -0.99 7.97 16 14 C -0.19 -4.28 5.65 -104.32 -0.59 -4.87 16 15 C -0.06 -1.22 8.32 -39.23 -0.33 -1.55 16 16 C -0.24 -4.87 10.03 -39.39 -0.39 -5.27 16 17 C -0.09 -1.98 9.96 -39.97 -0.40 -2.38 16 18 C -0.15 -3.54 8.59 -39.28 -0.34 -3.88 16 19 C 0.15 3.72 5.56 -106.53 -0.59 3.12 16 20 C -0.42 -10.70 7.98 -37.91 -0.30 -11.00 16 21 H 0.08 2.12 7.07 -52.49 -0.37 1.74 16 22 C 0.08 1.89 5.25 -17.31 -0.09 1.80 16 23 N -0.78 -19.36 10.91 55.56 0.61 -18.75 16 24 Si 0.91 18.82 29.57 -169.99 -5.03 13.79 16 25 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.44 5.41 -51.93 -0.28 1.16 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.14 2.38 8.06 -52.48 -0.42 1.96 16 38 H 0.09 1.60 7.09 -52.49 -0.37 1.23 16 39 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.12 3.01 6.29 -52.48 -0.33 2.68 16 42 H 0.29 6.44 8.29 -40.82 -0.34 6.10 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -27.58 356.86 -11.06 -38.64 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.14 Total: 6.22 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -6.51 Total: -22.13 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.20 Total: -39.66 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.58 -11.06 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251427171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.545 kcal (2) G-P(sol) polarization free energy of solvation -27.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds