Wall clock time and date at job start Tue Mar 31 2020 14:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47148 * 2 1 4 4 N 1.46500 * 109.47238 * 180.02562 * 3 2 1 5 5 C 1.38174 * 126.48058 * 85.28063 * 4 3 2 6 6 C 1.38768 * 133.83196 * 359.97438 * 5 4 3 7 7 C 1.37865 * 119.89678 * 180.02562 * 6 5 4 8 8 C 1.39071 * 120.45999 * 359.97438 * 7 6 5 9 9 F 1.35103 * 119.73771 * 180.02562 * 8 7 6 10 10 C 1.37687 * 120.51114 * 0.02769 * 8 7 6 11 11 C 1.40060 * 119.75466 * 359.97438 * 10 8 7 12 12 N 1.34745 * 133.26876 * 180.02562 * 11 10 8 13 13 C 1.31340 * 109.76660 * 179.72301 * 12 11 10 14 14 C 1.47291 * 125.16600 * 180.30577 * 13 12 11 15 15 C 1.39406 * 120.35794 * 130.50365 * 14 13 12 16 16 C 1.38007 * 119.96010 * 179.69860 * 15 14 13 17 17 C 1.38976 * 120.70381 * 0.58507 * 16 15 14 18 18 C 1.36414 * 120.72946 * 359.71520 * 17 16 15 19 19 C 1.40772 * 120.00994 * 359.97438 * 18 17 16 20 20 C 1.40755 * 120.34697 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99898 * 150.31899 * 20 19 18 22 22 C 1.40153 * 120.00071 * 330.32363 * 20 19 18 23 23 N 1.30714 * 119.99852 * 349.11601 * 22 20 19 24 24 Si 1.86800 * 120.00052 * 169.11698 * 22 20 19 25 25 H 1.48504 * 109.47061 * 59.99874 * 24 22 20 26 26 H 1.48504 * 109.46762 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47024 * 299.99725 * 24 22 20 28 28 H 1.08997 * 109.47197 * 59.99804 * 1 2 3 29 29 H 1.08996 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.09011 * 109.47089 * 300.00017 * 1 2 3 31 31 H 1.08997 * 109.47038 * 119.99665 * 2 1 3 32 32 H 1.08998 * 109.47321 * 239.99759 * 2 1 3 33 33 H 1.08997 * 109.47231 * 300.00175 * 3 2 1 34 34 H 1.09000 * 109.47363 * 60.00453 * 3 2 1 35 35 H 1.08000 * 120.05566 * 359.97438 * 6 5 4 36 36 H 1.07999 * 119.76890 * 179.97438 * 7 6 5 37 37 H 1.08007 * 120.12014 * 179.97438 * 10 8 7 38 38 H 1.08001 * 120.02131 * 359.97438 * 15 14 13 39 39 H 1.08003 * 119.65099 * 180.30203 * 16 15 14 40 40 H 1.07991 * 119.63484 * 179.74469 * 17 16 15 41 41 H 1.08006 * 119.99623 * 180.02562 * 18 17 16 42 42 H 0.96998 * 119.99982 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3260 1.3513 -1.1082 6 6 4.0920 1.2385 -2.4713 7 6 5.1541 1.1660 -3.3473 8 6 6.4615 1.2056 -2.8749 9 9 7.4914 1.1340 -3.7463 10 6 6.7143 1.3172 -1.5260 11 6 5.6466 1.3919 -0.6226 12 7 5.5777 1.5033 0.7185 13 6 4.3205 1.5404 1.0970 14 6 3.8572 1.6643 2.4897 15 6 2.8968 2.6154 2.8307 16 6 2.4640 2.7202 4.1370 17 6 2.9846 1.8935 5.1255 18 6 3.9300 0.9573 4.8246 19 6 4.3885 0.8198 3.5008 20 6 5.3642 -0.1435 3.1826 21 1 5.3819 -0.5897 2.1992 22 6 6.3126 -0.5238 4.1418 23 7 6.4303 0.1582 5.2507 24 14 7.4087 -2.0051 3.8355 25 1 8.2114 -1.7813 2.6064 26 1 8.3193 -2.1948 4.9932 27 1 6.5671 -3.2164 3.6635 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9564 0.8900 35 1 3.0793 1.2067 -2.8455 36 1 4.9695 1.0778 -4.4077 37 1 7.7322 1.3469 -1.1660 38 1 2.4883 3.2668 2.0723 39 1 1.7161 3.4555 4.3947 40 1 2.6365 1.9932 6.1429 41 1 4.3262 0.3208 5.6021 42 1 7.0869 -0.1047 5.9144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251427171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:57 Heat of formation + Delta-G solvation = 23.561371 kcal Electronic energy + Delta-G solvation = -26985.497277 eV Core-core repulsion = 23230.254428 eV Total energy + Delta-G solvation = -3755.242849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.83871 -43.01859 -39.45598 -37.90740 -36.49853 -35.60093 -33.41138 -32.46500 -31.54902 -30.93786 -29.38925 -27.42293 -27.11634 -24.62550 -23.44569 -22.93342 -22.66875 -22.15730 -20.84950 -19.20204 -18.80239 -18.21771 -17.63050 -17.15803 -16.72361 -16.42100 -16.18633 -16.15357 -15.92608 -15.61825 -15.10478 -14.92216 -14.51058 -14.38661 -14.29680 -13.95336 -13.82005 -13.57569 -13.27263 -13.05300 -12.95796 -12.85872 -12.69310 -12.46064 -12.36497 -12.22095 -12.14688 -11.78941 -11.49449 -11.46277 -11.23509 -11.14586 -10.68536 -9.70247 -9.34369 -9.07911 -8.91488 -8.65405 -6.37322 -0.21158 0.33718 0.77496 1.00738 1.29889 1.39711 1.46922 1.68461 2.02322 2.15373 2.71294 2.76472 3.06963 3.46166 3.63606 3.69600 3.76356 3.92121 3.99345 4.21096 4.24500 4.31147 4.33531 4.40229 4.53451 4.58385 4.64277 4.72154 4.84232 4.87126 5.02609 5.08060 5.10050 5.13311 5.17213 5.21929 5.32483 5.36913 5.45678 5.56120 5.58426 5.84885 5.93189 6.00153 6.11722 6.26217 6.34419 6.63040 6.84987 6.93583 7.15931 8.26029 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.009312 B = 0.005573 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.305630 B = 5023.266357 C = 6915.249108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.103 3.897 4 N -0.484 5.484 5 C 0.017 3.983 6 C -0.063 4.063 7 C -0.137 4.137 8 C 0.086 3.914 9 F -0.142 7.142 10 C -0.135 4.135 11 C 0.043 3.957 12 N -0.531 5.531 13 C 0.377 3.623 14 C -0.189 4.189 15 C -0.062 4.062 16 C -0.230 4.230 17 C -0.093 4.093 18 C -0.174 4.174 19 C 0.119 3.881 20 C -0.450 4.450 21 H 0.056 0.944 22 C 0.042 3.958 23 N -0.815 5.815 24 Si 0.967 3.033 25 H -0.276 1.276 26 H -0.257 1.257 27 H -0.257 1.257 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.169 0.831 36 H 0.178 0.822 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 0.745 -11.949 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.172 4.172 3 C -0.017 4.017 4 N -0.173 5.173 5 C -0.092 4.092 6 C -0.083 4.083 7 C -0.157 4.157 8 C 0.064 3.936 9 F -0.121 7.121 10 C -0.156 4.156 11 C -0.079 4.079 12 N -0.250 5.250 13 C 0.117 3.883 14 C -0.193 4.193 15 C -0.082 4.082 16 C -0.249 4.249 17 C -0.112 4.112 18 C -0.193 4.193 19 C 0.115 3.885 20 C -0.479 4.479 21 H 0.074 0.926 22 C -0.174 4.174 23 N -0.440 5.440 24 Si 0.788 3.212 25 H -0.201 1.201 26 H -0.181 1.181 27 H -0.181 1.181 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.186 0.814 36 H 0.195 0.805 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.137 0.863 41 H 0.124 0.876 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.689 0.796 -11.251 14.870 hybrid contribution 0.891 -0.701 -0.122 1.140 sum -8.798 0.095 -11.373 14.379 Atomic orbital electron populations 1.21639 0.91937 1.02951 1.03143 1.21824 0.98555 0.95127 1.01730 1.22257 0.74170 0.99418 1.05856 1.45933 1.07839 1.59201 1.04283 1.19292 0.90698 1.08506 0.90748 1.20101 1.01124 1.00322 0.86751 1.21095 0.88689 1.03926 1.01990 1.17235 0.85225 1.05522 0.85571 1.91463 1.58135 1.94195 1.68331 1.20125 0.98375 1.05968 0.91111 1.19098 0.93135 1.04842 0.90801 1.70681 1.19210 1.24623 1.10505 1.21719 0.84050 0.93784 0.88793 1.17728 1.08763 1.05099 0.87689 1.20790 0.95014 0.95568 0.96790 1.20664 1.06570 1.05140 0.92502 1.20877 0.95999 0.95330 0.98955 1.21062 0.99460 1.02127 0.96699 1.17720 0.89789 0.89611 0.91357 1.19434 1.10922 1.19418 0.98173 0.92589 1.26554 0.98335 0.98886 0.93664 1.69747 1.30729 1.35765 1.07790 0.85480 0.78299 0.78526 0.78852 1.20127 1.18108 1.18109 0.90216 0.91712 0.92216 0.94405 0.91422 0.86376 0.88397 0.81379 0.80470 0.85690 0.86400 0.85129 0.86323 0.87571 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.91 71.98 0.71 -1.63 16 2 C -0.13 -3.26 6.26 30.59 0.19 -3.06 16 3 C 0.10 2.64 5.98 86.38 0.52 3.16 16 4 N -0.48 -17.37 2.84 -507.40 -1.44 -18.81 16 5 C 0.02 0.61 6.87 38.89 0.27 0.88 16 6 C -0.06 -1.55 10.03 22.31 0.22 -1.32 16 7 C -0.14 -3.22 10.01 22.38 0.22 -3.00 16 8 C 0.09 2.61 7.28 22.34 0.16 2.77 16 9 F -0.14 -4.17 17.26 44.97 0.78 -3.39 16 10 C -0.13 -5.08 10.08 22.58 0.23 -4.85 16 11 C 0.04 1.83 7.20 39.76 0.29 2.12 16 12 N -0.53 -26.83 10.27 -181.98 -1.87 -28.70 16 13 C 0.38 17.35 6.43 136.18 0.88 18.22 16 14 C -0.19 -8.99 5.65 -19.67 -0.11 -9.10 16 15 C -0.06 -2.49 8.32 22.50 0.19 -2.30 16 16 C -0.23 -8.76 10.03 22.39 0.22 -8.53 16 17 C -0.09 -3.91 9.96 22.02 0.22 -3.69 16 18 C -0.17 -8.70 8.59 22.46 0.19 -8.50 16 19 C 0.12 6.35 5.56 -21.10 -0.12 6.23 16 20 C -0.45 -25.04 7.98 23.35 0.19 -24.86 16 21 H 0.06 3.26 7.07 -2.91 -0.02 3.24 16 22 C 0.04 2.17 5.25 85.32 0.45 2.62 16 23 N -0.81 -42.86 10.91 21.86 0.24 -42.62 16 24 Si 0.97 41.12 29.57 68.60 2.03 43.15 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 27 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 2.57 5.41 -2.39 -0.01 2.55 16 35 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 38 H 0.12 3.97 7.09 -2.91 -0.02 3.95 16 39 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 40 H 0.12 4.26 8.06 -2.92 -0.02 4.24 16 41 H 0.11 5.56 6.29 -2.91 -0.02 5.54 16 42 H 0.29 13.86 8.29 -92.71 -0.77 13.09 16 Total: -1.00 -67.15 356.86 5.70 -61.46 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 1.05 Total: 23.78 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 4.92 Total: -34.87 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -3.07 Total: -90.13 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -67.15 5.70 -61.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251427171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.019 kcal (2) G-P(sol) polarization free energy of solvation -67.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds