Wall clock time and date at job start Tue Mar 31 2020 14:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 120.00311 * 2 1 4 4 H 1.08991 * 109.47218 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.46947 * 240.00097 * 3 2 1 6 6 C 1.52998 * 109.46944 * 120.00599 * 3 2 1 7 7 N 1.46905 * 109.47155 * 185.00080 * 6 3 2 8 8 C 1.37942 * 111.00000 * 173.22953 * 7 6 3 9 9 C 1.38805 * 126.11992 * 16.55957 * 8 7 6 10 10 C 1.43197 * 126.82441 * 0.02562 * 9 8 7 11 11 N 4.28186 * 132.13247 * 101.90675 * 2 1 3 12 12 C 1.47415 * 106.34633 * 180.25220 * 9 8 7 13 13 C 1.40829 * 126.46213 * 179.79759 * 12 9 8 14 14 H 1.08006 * 120.00105 * 359.97438 * 13 12 9 15 15 C 1.40000 * 119.99909 * 179.97438 * 13 12 9 16 16 N 1.30808 * 119.99845 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99912 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47341 * 59.99973 * 17 15 13 19 19 H 1.48498 * 109.47288 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47352 * 300.00060 * 17 15 13 21 21 N 1.32776 * 107.06950 * 359.76804 * 12 9 8 22 22 N 1.36202 * 126.11274 * 196.41443 * 8 7 6 23 23 C 1.39779 * 125.18720 * 359.97438 * 22 8 7 24 24 C 1.38975 * 120.08029 * 317.60352 * 23 22 8 25 25 C 1.38081 * 119.92046 * 179.72336 * 24 23 22 26 26 C 1.38315 * 120.07833 * 0.57166 * 25 24 23 27 27 C 1.38319 * 120.15608 * 359.70404 * 26 25 24 28 28 C 1.38072 * 120.07895 * 359.97438 * 27 26 25 29 29 H 1.07991 * 120.00484 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.99583 * 359.97438 * 1 2 3 31 31 H 1.08008 * 119.99511 * 180.02562 * 2 1 3 32 32 H 0.96701 * 113.99982 * 300.00361 * 5 3 2 33 33 H 1.08995 * 109.47568 * 64.99575 * 6 3 2 34 34 H 1.09000 * 109.46913 * 304.99505 * 6 3 2 35 35 H 1.00902 * 110.99759 * 297.18472 * 7 6 3 36 36 H 0.97006 * 120.00057 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.03861 * 0.02562 * 24 23 22 38 38 H 1.07998 * 119.96134 * 180.32087 * 25 24 23 39 39 H 1.07995 * 119.92174 * 179.72492 * 26 25 24 40 40 H 1.07995 * 119.95891 * 180.02562 * 27 26 25 41 41 H 1.08002 * 120.04044 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3554 2.1335 0.0005 5 8 2.8851 1.3806 -1.1668 6 6 2.9433 1.3859 1.2492 7 7 3.5857 2.7056 1.3111 8 6 4.2663 2.8688 2.4998 9 6 4.6334 1.8584 3.3778 10 6 4.3820 0.4568 3.2268 11 7 4.1825 -0.6551 3.1071 12 6 5.3287 2.5157 4.4993 13 6 5.8755 1.8819 5.6318 14 1 5.8047 0.8094 5.7374 15 6 6.5110 2.6422 6.6209 16 7 6.5963 3.9412 6.4932 17 14 7.2369 1.8015 8.1228 18 1 8.2759 0.8312 7.6932 19 1 7.8484 2.8204 9.0133 20 1 6.1630 1.0843 8.8561 21 7 5.3427 3.8178 4.2398 22 7 4.7006 4.0501 3.0205 23 6 4.5260 5.3041 2.4282 24 6 4.7191 5.4617 1.0610 25 6 4.5401 6.7007 0.4784 26 6 4.1807 7.7868 1.2557 27 6 3.9933 7.6349 2.6177 28 6 4.1640 6.3974 3.2060 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.5405 0.6727 -1.2330 33 1 3.7086 0.6110 1.2055 34 1 2.3281 1.2393 2.1369 35 1 4.1977 2.8472 0.5215 36 1 7.0363 4.4681 7.1787 37 1 5.0040 4.6150 0.4541 38 1 4.6849 6.8228 -0.5849 39 1 4.0457 8.7557 0.7982 40 1 3.7122 8.4850 3.2216 41 1 4.0171 6.2794 4.2694 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253574813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:59 Heat of formation + Delta-G solvation = 106.360155 kcal Electronic energy + Delta-G solvation = -26567.531520 eV Core-core repulsion = 22835.799057 eV Total energy + Delta-G solvation = -3731.732462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.32150 -38.58902 -37.98850 -35.77853 -34.99504 -33.74476 -33.40252 -32.11455 -30.67235 -29.01471 -28.53905 -27.03535 -25.91195 -23.39768 -22.23060 -22.10669 -20.56873 -20.45507 -19.89671 -17.91904 -16.98200 -16.80206 -16.50869 -16.25085 -15.55094 -15.10875 -14.98280 -14.69762 -14.37011 -14.22939 -13.73346 -13.45463 -13.22237 -13.10880 -12.93623 -12.61294 -12.44441 -12.24412 -12.03523 -11.95142 -11.82705 -11.30989 -11.28983 -11.21390 -11.07046 -10.85736 -10.68819 -10.29316 -10.23978 -9.79884 -9.68215 -9.27126 -8.90936 -8.67148 -8.62014 -7.57207 -7.21050 -6.67282 -4.66572 1.40552 1.67963 2.01703 2.45823 3.01534 3.09488 3.12526 3.19848 3.55272 3.74122 3.94890 4.09486 4.16916 4.37113 4.42091 4.76937 4.88989 4.95344 5.14334 5.17232 5.17944 5.28664 5.34737 5.39980 5.62787 5.66055 5.69488 5.77446 5.81865 6.00094 6.07833 6.22701 6.38955 6.43298 6.52981 6.61191 6.70469 6.77434 6.99372 7.01965 7.11910 7.21783 7.34253 7.46458 8.04672 8.30441 8.48981 8.56937 8.82295 9.49524 10.27052 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.008426 B = 0.005256 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.134949 B = 5325.627919 C = 8226.598902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.189 4.189 3 C 0.139 3.861 4 H 0.112 0.888 5 O -0.556 6.556 6 C 0.033 3.967 7 N -0.610 5.610 8 C 0.311 3.689 9 C -0.275 4.275 10 C 0.324 3.676 11 N -0.500 5.500 12 C 0.263 3.737 13 C -0.429 4.429 14 H 0.085 0.915 15 C 0.074 3.926 16 N -0.752 5.752 17 Si 0.913 3.087 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.265 1.265 21 N -0.320 5.320 22 N -0.338 5.338 23 C 0.192 3.808 24 C -0.134 4.134 25 C -0.103 4.103 26 C -0.143 4.143 27 C -0.105 4.105 28 C -0.110 4.110 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.374 0.626 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.362 0.638 36 H 0.279 0.721 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 3.125 -10.776 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.208 4.208 3 C 0.080 3.920 4 H 0.130 0.870 5 O -0.361 6.361 6 C -0.096 4.096 7 N -0.243 5.243 8 C 0.084 3.916 9 C -0.296 4.296 10 C 0.014 3.986 11 N -0.181 5.181 12 C 0.110 3.890 13 C -0.468 4.468 14 H 0.103 0.897 15 C -0.149 4.149 16 N -0.378 5.378 17 Si 0.738 3.262 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.189 1.189 21 N -0.149 5.149 22 N -0.110 5.110 23 C 0.098 3.902 24 C -0.155 4.155 25 C -0.122 4.122 26 C -0.161 4.161 27 C -0.124 4.124 28 C -0.130 4.130 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.221 0.779 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.190 0.810 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.854 3.687 -10.468 13.044 hybrid contribution 1.161 -1.736 0.608 2.175 sum -5.693 1.950 -9.860 11.551 Atomic orbital electron populations 1.23893 0.95770 1.02183 0.98544 1.23528 0.96920 0.98903 1.01448 1.21118 0.91474 0.95663 0.83757 0.87007 1.86623 1.51436 1.54276 1.43769 1.22964 0.98208 0.88418 1.00030 1.56466 1.34195 1.31303 1.02355 1.19137 0.93693 0.87138 0.91627 1.17183 1.22360 0.84497 1.05515 1.24523 0.91249 0.91584 0.91222 1.81129 1.13970 1.11411 1.11557 1.20219 0.89847 0.88361 0.90528 1.18598 1.32576 0.94741 1.00836 0.89656 1.25878 0.94883 0.94723 0.99400 1.69862 1.30118 1.05624 1.32163 0.86271 0.79856 0.79673 0.80429 1.18934 1.20238 1.18929 1.79159 1.27289 1.14526 0.93904 1.46265 1.45184 1.00962 1.18615 1.17360 0.97785 0.83855 0.91193 1.20908 1.03102 0.98056 0.93398 1.20837 0.99756 0.92112 0.99489 1.21048 1.02466 0.98558 0.94056 1.20980 0.99910 0.96656 0.94861 1.21106 0.99325 0.91711 1.00870 0.88140 0.88186 0.86924 0.77924 0.92514 0.88983 0.80965 0.90989 0.86457 0.86004 0.86376 0.85951 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 14.32 29.01 0.42 -1.25 16 2 C -0.19 -2.10 9.11 -36.03 -0.33 -2.43 16 3 C 0.14 1.67 3.58 -27.89 -0.10 1.57 16 4 H 0.11 1.37 7.78 -51.93 -0.40 0.97 16 5 O -0.56 -6.36 12.97 -35.23 -0.46 -6.82 16 6 C 0.03 0.49 3.80 -3.82 -0.01 0.48 16 7 N -0.61 -9.72 5.78 -59.58 -0.34 -10.07 16 8 C 0.31 6.29 7.01 -152.81 -1.07 5.22 16 9 C -0.28 -6.24 6.05 -104.03 -0.63 -6.87 16 10 C 0.32 6.99 11.66 -22.47 -0.26 6.73 16 11 N -0.50 -10.66 18.07 41.84 0.76 -9.90 16 12 C 0.26 6.84 6.94 -82.74 -0.57 6.26 16 13 C -0.43 -11.21 9.26 -37.94 -0.35 -11.56 16 14 H 0.09 2.17 7.85 -52.48 -0.41 1.76 16 15 C 0.07 1.85 5.50 -17.33 -0.10 1.76 16 16 N -0.75 -19.46 11.95 55.55 0.66 -18.79 16 17 Si 0.91 18.64 29.56 -169.99 -5.02 13.62 16 18 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 21 N -0.32 -8.26 10.54 33.37 0.35 -7.91 16 22 N -0.34 -7.38 3.69 -9.46 -0.03 -7.42 16 23 C 0.19 3.63 6.23 -83.69 -0.52 3.11 16 24 C -0.13 -2.09 9.10 -39.37 -0.36 -2.45 16 25 C -0.10 -1.35 10.04 -39.61 -0.40 -1.74 16 26 C -0.14 -1.80 10.04 -39.52 -0.40 -2.19 16 27 C -0.11 -1.49 10.04 -39.61 -0.40 -1.88 16 28 C -0.11 -1.95 9.81 -39.37 -0.39 -2.34 16 29 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.10 0.92 7.83 -52.49 -0.41 0.51 16 31 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.37 3.18 9.04 45.56 0.41 3.59 16 33 H 0.06 0.88 5.79 -51.93 -0.30 0.58 16 34 H 0.09 1.53 7.34 -51.93 -0.38 1.15 16 35 H 0.36 5.17 6.93 -39.29 -0.27 4.90 16 36 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 37 H 0.12 1.69 6.35 -52.49 -0.33 1.36 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -29.58 361.93 -7.88 -37.45 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -3.77 Total: 11.98 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -5.47 Total: -7.60 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 1.39 Total: -54.09 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.46 Total: -6.82 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.58 -7.88 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253574813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.814 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds