Wall clock time and date at job start Tue Mar 31 2020 14:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50708 * 119.99845 * 2 1 4 4 N 1.46504 * 109.47119 * 123.70004 * 3 2 1 5 5 C 1.36730 * 127.13757 * 88.40226 * 4 3 2 6 6 C 1.50700 * 126.35182 * 359.76535 * 5 4 3 7 7 C 1.52998 * 109.47287 * 89.99203 * 6 5 4 8 8 C 1.50706 * 109.47066 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99689 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00162 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00031 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99693 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47389 * 90.00091 * 12 10 8 14 14 H 1.48509 * 109.46666 * 209.99812 * 12 10 8 15 15 H 1.48502 * 109.47304 * 329.99594 * 12 10 8 16 16 N 1.30300 * 107.30663 * 180.02562 * 5 4 3 17 17 N 1.28530 * 110.04869 * 0.02562 * 16 5 4 18 18 C 1.31214 * 109.86127 * 0.02562 * 17 16 5 19 19 N 1.38580 * 126.47185 * 179.97438 * 18 17 16 20 20 C 1.46475 * 110.99985 * 270.59627 * 19 18 17 21 21 C 1.53244 * 109.86112 * 197.76486 * 20 19 18 22 22 S 1.81895 * 108.50798 * 297.99918 * 21 20 19 23 23 O 1.42095 * 109.47486 * 167.14706 * 22 21 20 24 24 C 1.81899 * 101.91719 * 51.30341 * 22 21 20 25 25 C 1.46469 * 111.00199 * 36.57466 * 19 18 17 26 26 H 1.08006 * 120.00146 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00348 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.00217 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47098 * 3.69489 * 3 2 1 30 30 H 1.09002 * 109.46778 * 243.69454 * 3 2 1 31 31 H 1.08994 * 109.47406 * 209.99815 * 6 5 4 32 32 H 1.09005 * 109.46960 * 329.99617 * 6 5 4 33 33 H 1.08999 * 109.47614 * 299.99921 * 7 6 5 34 34 H 1.08995 * 109.47281 * 60.00483 * 7 6 5 35 35 H 0.97002 * 119.99635 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.40388 * 317.88614 * 20 19 18 37 37 H 1.09003 * 109.40465 * 77.64469 * 20 19 18 38 38 H 1.09002 * 109.63246 * 178.29398 * 21 20 19 39 39 H 1.09000 * 109.63268 * 57.70092 * 21 20 19 40 40 H 1.08998 * 109.63542 * 188.99243 * 24 22 21 41 41 H 1.09002 * 109.78947 * 68.49369 * 24 22 21 42 42 H 1.08993 * 109.40839 * 282.35527 * 25 19 18 43 43 H 1.08998 * 109.40139 * 42.19832 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9713 1.3449 1.1491 5 6 4.2585 0.8865 1.2005 6 6 5.0195 0.2330 0.0758 7 6 5.7542 1.3041 -0.7327 8 6 6.5148 0.6506 -1.8578 9 1 6.4774 -0.4214 -1.9837 10 6 7.2583 1.4213 -2.7263 11 7 7.9216 0.8510 -3.7084 12 14 7.3234 3.2754 -2.5080 13 1 8.4570 3.6293 -1.6164 14 1 7.5131 3.9231 -3.8309 15 1 6.0519 3.7476 -1.9034 16 7 4.7033 1.1143 2.4038 17 7 3.7915 1.6806 3.1109 18 6 2.7071 1.8453 2.3907 19 7 1.5182 2.4198 2.8115 20 6 0.6218 1.4123 3.3833 21 6 -0.8102 1.9559 3.4297 22 16 -0.8382 3.4173 4.5124 23 8 -2.0672 4.1099 4.3417 24 6 0.5203 4.4162 3.8303 25 6 1.7693 3.5338 3.7287 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8499 -0.9352 0.0004 29 1 1.3570 2.1326 0.0662 30 1 2.6395 1.3921 -0.9213 31 1 5.7424 -0.4713 0.4874 32 1 4.3234 -0.2984 -0.5732 33 1 5.0313 2.0084 -1.1444 34 1 6.4503 1.8355 -0.0838 35 1 8.4449 1.3932 -4.3192 36 1 0.6481 0.5131 2.7677 37 1 0.9494 1.1678 4.3937 38 1 -1.4790 1.1926 3.8276 39 1 -1.1277 2.2379 2.4258 40 1 0.7211 5.2604 4.4899 41 1 0.2486 4.7816 2.8400 42 1 2.0171 3.1420 4.7151 43 1 2.6025 4.1292 3.3557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340420604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:03 Heat of formation + Delta-G solvation = 74.503738 kcal Electronic energy + Delta-G solvation = -25713.099437 eV Core-core repulsion = 22115.429528 eV Total energy + Delta-G solvation = -3597.669909 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.84330 -38.57427 -36.26544 -36.02090 -34.26405 -32.79813 -32.15340 -32.01707 -30.75595 -28.29624 -26.82251 -25.53189 -24.14388 -22.87591 -21.72546 -20.82668 -20.41253 -19.85354 -17.95053 -17.61754 -16.89503 -16.44488 -16.37206 -15.51531 -15.45797 -15.31053 -15.00649 -14.92955 -14.26543 -14.04583 -13.84406 -13.38051 -13.30018 -13.21825 -12.72825 -12.66079 -12.45756 -12.38240 -11.99671 -11.77213 -11.72405 -11.62088 -11.39464 -11.13450 -10.63670 -10.44282 -10.23366 -10.08449 -9.98426 -9.89929 -9.83809 -9.34871 -9.32272 -8.66301 -8.63253 -8.44644 -6.14179 -4.13968 1.17629 1.68758 1.89477 2.10022 2.42408 3.04482 3.25782 3.33230 3.34404 3.35986 3.48185 4.33866 4.36977 4.43259 4.51531 4.61205 4.67931 4.75260 4.79726 4.84479 4.97991 4.99210 5.17668 5.19702 5.31297 5.35691 5.40421 5.47213 5.54098 5.57898 5.67412 6.01947 6.11005 6.19879 6.23927 6.34569 6.39681 6.46035 6.70363 7.07129 7.18274 7.24091 7.64084 8.39522 8.88819 8.95254 9.47432 10.98664 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.003203 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.345110 B = 8741.007511 C = 9168.640340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.172 4.172 3 C 0.135 3.865 4 N -0.463 5.463 5 C 0.214 3.786 6 C -0.024 4.024 7 C -0.004 4.004 8 C -0.524 4.524 9 H 0.076 0.924 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.877 3.123 13 H -0.274 1.274 14 H -0.287 1.287 15 H -0.269 1.269 16 N -0.293 5.293 17 N -0.311 5.311 18 C 0.329 3.671 19 N -0.477 5.477 20 C 0.086 3.914 21 C -0.433 4.433 22 S 1.235 4.765 23 O -0.855 6.855 24 C -0.434 4.434 25 C 0.096 3.904 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.013 0.987 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.899 1.163 16.078 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.191 4.191 3 C 0.013 3.987 4 N -0.156 5.156 5 C -0.053 4.053 6 C -0.064 4.064 7 C -0.042 4.042 8 C -0.562 4.562 9 H 0.094 0.906 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.705 3.295 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.194 1.194 16 N -0.132 5.132 17 N -0.155 5.155 18 C -0.027 4.027 19 N -0.202 5.202 20 C -0.042 4.042 21 C -0.571 4.571 22 S 1.433 4.567 23 O -0.850 6.850 24 C -0.572 4.572 25 C -0.032 4.032 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.118 0.882 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.141 0.859 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.725 1.667 17.475 25.667 hybrid contribution -0.833 1.293 -2.902 3.284 sum -19.558 2.960 14.573 24.569 Atomic orbital electron populations 1.23914 0.95497 1.02301 0.98527 1.23146 0.96284 0.98258 1.01442 1.20991 0.92586 0.97182 0.87988 1.46316 1.12572 1.46118 1.10590 1.25650 0.81943 0.99785 0.97917 1.20261 0.97264 0.98778 0.90052 1.19546 0.95439 0.94049 0.95206 1.20997 1.28824 0.95818 1.10534 0.90571 1.24960 0.94773 0.98459 0.94821 1.69897 1.31186 1.35901 1.16691 0.86822 0.79113 0.86114 0.77487 1.19987 1.21273 1.19350 1.74070 1.22087 1.15783 1.01309 1.74526 0.98298 1.17357 1.25326 1.21930 0.93723 1.02724 0.84297 1.57596 1.09135 1.10257 1.43238 1.21757 0.88710 0.93628 1.00091 1.27610 1.00876 1.15460 1.13164 1.70610 0.86959 0.89830 1.09334 1.93124 1.38149 1.71093 1.82617 1.27649 1.10255 1.09151 1.10173 1.21608 0.96372 0.89849 0.95406 0.88326 0.87747 0.86359 0.88195 0.87003 0.88573 0.90529 0.96919 0.96024 0.92549 0.89532 0.91347 0.85887 0.88491 0.85773 0.88539 0.90828 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 14.27 29.02 0.41 -0.93 16 2 C -0.17 -1.74 9.81 -36.02 -0.35 -2.10 16 3 C 0.14 1.62 6.32 -5.19 -0.03 1.59 16 4 N -0.46 -6.87 2.79 -115.36 -0.32 -7.19 16 5 C 0.21 3.79 7.32 -154.02 -1.13 2.67 16 6 C -0.02 -0.44 5.39 -27.88 -0.15 -0.59 16 7 C 0.00 -0.09 4.02 -27.88 -0.11 -0.20 16 8 C -0.52 -14.14 9.66 -34.44 -0.33 -14.47 16 9 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 12 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 16 N -0.29 -5.64 12.18 32.99 0.40 -5.23 16 17 N -0.31 -5.28 11.76 30.31 0.36 -4.92 16 18 C 0.33 4.69 6.49 -318.89 -2.07 2.61 16 19 N -0.48 -4.95 4.41 -174.90 -0.77 -5.72 16 20 C 0.09 0.67 5.36 -3.93 -0.02 0.64 16 21 C -0.43 -2.76 6.67 37.28 0.25 -2.51 16 22 S 1.23 8.02 13.81 -107.50 -1.48 6.53 16 23 O -0.85 -11.27 18.14 -35.23 -0.64 -11.91 16 24 C -0.43 -3.11 6.67 37.29 0.25 -2.86 16 25 C 0.10 0.83 5.03 -3.93 -0.02 0.81 16 26 H 0.10 0.75 7.84 -52.48 -0.41 0.34 16 27 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.10 1.08 7.79 -51.93 -0.40 0.68 16 30 H 0.11 1.43 7.97 -51.93 -0.41 1.02 16 31 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 32 H 0.08 1.29 7.98 -51.93 -0.41 0.87 16 33 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 34 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 37 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 38 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 43 H 0.09 0.96 7.93 -51.93 -0.41 0.55 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -37.17 368.84 -10.80 -47.97 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -6.60 Total: -2.35 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -3.41 Total: -13.41 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.44 Total: -49.14 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.64 Total: -11.91 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 8.02 SS G_CDS: -1.48 Total: 6.53 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.17 -10.80 -47.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340420604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.471 kcal (2) G-P(sol) polarization free energy of solvation -37.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds