Wall clock time and date at job start Tue Mar 31 2020 13:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47074 * 180.02562 * 3 2 1 5 5 C 1.37915 * 119.93802 * 99.72640 * 4 3 2 6 6 C 1.39591 * 119.87048 * 179.75268 * 5 4 3 7 7 C 1.47790 * 120.13340 * 180.26952 * 6 5 4 8 8 O 1.21553 * 119.99910 * 0.26892 * 7 6 5 9 9 N 1.34776 * 119.99954 * 180.27356 * 7 6 5 10 10 C 1.46500 * 119.99720 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46929 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46929 * 179.97438 * 11 10 9 13 13 C 1.46494 * 120.00196 * 269.99645 * 12 11 10 14 14 C 1.36939 * 119.99977 * 90.00042 * 12 11 10 15 15 H 1.08000 * 119.99940 * 22.34142 * 14 12 11 16 16 C 1.38806 * 120.00109 * 202.34106 * 14 12 11 17 17 N 1.31620 * 119.99886 * 11.35510 * 16 14 12 18 18 Si 1.86798 * 120.00270 * 191.35575 * 16 14 12 19 19 H 1.48500 * 109.47056 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 119.99551 * 18 16 14 21 21 H 1.48494 * 109.47502 * 240.00042 * 18 16 14 22 22 C 1.39634 * 119.73695 * 0.53967 * 6 5 4 23 23 C 1.37872 * 119.86501 * 359.70711 * 22 6 5 24 24 C 1.38488 * 119.93510 * 279.99617 * 4 3 2 25 25 Cl 1.73599 * 119.86727 * 0.02562 * 24 4 3 26 26 H 1.08991 * 109.47393 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46780 * 300.00237 * 1 2 3 28 28 H 1.08999 * 109.47227 * 59.99924 * 1 2 3 29 29 H 1.09001 * 109.46780 * 239.99763 * 2 1 3 30 30 H 1.08999 * 109.47227 * 120.00076 * 2 1 3 31 31 H 1.09001 * 109.47413 * 60.00151 * 3 2 1 32 32 H 1.09003 * 109.46837 * 299.99731 * 3 2 1 33 33 H 1.08004 * 120.06452 * 359.97438 * 5 4 3 34 34 H 0.97000 * 120.00266 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47472 * 299.99746 * 10 9 7 36 36 H 1.09001 * 109.47431 * 60.00471 * 10 9 7 37 37 H 1.08997 * 109.46824 * 300.00128 * 11 10 9 38 38 H 1.08998 * 109.47194 * 59.99940 * 11 10 9 39 39 H 1.09006 * 109.47366 * 94.20893 * 13 12 11 40 40 H 1.08999 * 109.48098 * 214.21146 * 13 12 11 41 41 H 1.09000 * 109.47475 * 334.21670 * 13 12 11 42 42 H 0.97004 * 119.99914 * 179.97438 * 17 16 14 43 43 H 1.07999 * 120.06703 * 179.68877 * 22 6 5 44 44 H 1.08003 * 119.93269 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2348 1.6445 -1.1788 6 6 5.6307 1.6493 -1.1769 7 6 6.3736 1.8712 -2.4351 8 8 5.7691 2.0549 -3.4736 9 7 7.7214 1.8698 -2.4312 10 6 8.4577 2.0892 -3.6785 11 6 9.9611 2.0386 -3.3988 12 7 10.6975 2.2574 -4.6463 13 6 11.0645 1.1173 -5.4899 14 6 11.0428 3.5276 -5.0237 15 1 11.1101 4.3113 -4.2837 16 6 11.3062 3.8079 -6.3574 17 7 11.0116 2.9233 -7.2864 18 14 12.0788 5.4405 -6.8339 19 1 12.3105 6.2535 -5.6130 20 1 13.3735 5.1945 -7.5183 21 1 11.1662 6.1718 -7.7490 22 6 6.3224 1.4380 0.0175 23 6 5.6239 1.2320 1.1882 24 6 4.2386 1.2339 1.1809 25 17 3.3660 0.9726 2.6588 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9562 -0.8900 33 1 3.6944 1.8022 -2.1006 34 1 8.2038 1.7228 -1.6026 35 1 8.1958 1.3122 -4.3966 36 1 8.1966 3.0652 -4.0877 37 1 10.2234 2.8153 -2.6806 38 1 10.2219 1.0625 -2.9898 39 1 10.3024 0.9715 -6.2554 40 1 12.0254 1.3121 -5.9663 41 1 11.1388 0.2199 -4.8757 42 1 11.1954 3.1193 -8.2185 43 1 7.4024 1.4356 0.0242 44 1 6.1578 1.0680 2.1126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753071111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:35 Heat of formation + Delta-G solvation = -12.142130 kcal Electronic energy + Delta-G solvation = -24121.891339 eV Core-core repulsion = 20486.127726 eV Total energy + Delta-G solvation = -3635.763613 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.38727 -38.78667 -36.74032 -36.06938 -35.47383 -34.22929 -31.75259 -31.39142 -30.98343 -28.16558 -26.74673 -25.89587 -24.39711 -22.85107 -22.60403 -21.61250 -20.69549 -19.94045 -17.83235 -16.88001 -16.64326 -16.43682 -15.47509 -15.14959 -15.00865 -14.79461 -14.57799 -14.25583 -14.06896 -13.79714 -13.68331 -13.23177 -13.12227 -12.77488 -12.47634 -12.41383 -12.30404 -11.93225 -11.83363 -11.74138 -11.44256 -11.23341 -10.98041 -10.91360 -10.89478 -10.86687 -10.62028 -10.30981 -10.00068 -9.95923 -9.76198 -9.25055 -9.02413 -8.67476 -8.58172 -6.85039 -5.76744 -3.24207 0.44727 0.93071 1.75174 2.71690 3.30316 3.37827 3.43933 3.45864 3.62386 4.23432 4.38818 4.46879 4.61336 4.72848 4.77057 4.82405 4.96815 5.01936 5.22862 5.30882 5.38466 5.47528 5.51442 5.57542 5.60171 5.74759 5.76881 5.78460 5.83767 5.90523 5.97630 6.00104 6.09698 6.23712 6.37037 6.61717 6.67966 6.70560 6.92933 7.34647 7.69094 7.71902 7.78378 8.33606 8.39612 9.18573 9.80457 10.28346 11.28312 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.002143 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.295367 B =13059.621213 C =13471.467133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.084 4.084 4 C -0.081 4.081 5 C -0.049 4.049 6 C -0.117 4.117 7 C 0.548 3.452 8 O -0.535 6.535 9 N -0.717 5.717 10 C 0.094 3.906 11 C 0.143 3.857 12 N -0.596 5.596 13 C 0.162 3.838 14 C -0.260 4.260 15 H 0.071 0.929 16 C 0.003 3.997 17 N -0.905 5.905 18 Si 0.907 3.093 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.289 1.289 22 C -0.081 4.081 23 C -0.114 4.114 24 C -0.017 4.017 25 Cl -0.065 7.065 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.394 0.606 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.042 0.958 39 H 0.030 0.970 40 H 0.047 0.953 41 H -0.002 1.002 42 H 0.253 0.747 43 H 0.138 0.862 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.172 -6.525 20.445 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.121 4.121 4 C -0.082 4.082 5 C -0.068 4.068 6 C -0.121 4.121 7 C 0.334 3.666 8 O -0.413 6.413 9 N -0.368 5.368 10 C -0.032 4.032 11 C 0.015 3.985 12 N -0.319 5.319 13 C 0.017 3.983 14 C -0.389 4.389 15 H 0.089 0.911 16 C -0.196 4.196 17 N -0.550 5.550 18 Si 0.737 3.263 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.216 1.216 22 C -0.100 4.100 23 C -0.133 4.133 24 C -0.044 4.044 25 Cl -0.036 7.036 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.163 0.837 34 H 0.229 0.771 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.016 0.984 42 H 0.064 0.936 43 H 0.155 0.845 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.577 -6.409 19.588 26.449 hybrid contribution 0.555 0.796 0.106 0.976 sum -16.022 -5.613 19.695 26.002 Atomic orbital electron populations 1.21760 0.95418 1.01782 1.01889 1.21516 0.95978 0.95642 1.02697 1.20707 0.89385 0.98253 1.03759 1.19732 0.96740 1.00403 0.91291 1.21171 0.92730 0.95146 0.97775 1.20239 0.94411 1.03499 0.93935 1.18200 0.82670 0.77722 0.88024 1.90797 1.68424 1.49124 1.32932 1.46139 1.05692 1.72073 1.12899 1.22605 0.94132 1.02182 0.84266 1.21004 0.88206 0.98647 0.90653 1.43936 1.61419 1.04295 1.22204 1.20855 1.00130 0.85270 0.92006 1.19260 1.41137 0.86933 0.91608 0.91141 1.25080 1.00804 0.97901 0.95794 1.70080 1.50235 1.34774 0.99895 0.86146 0.78665 0.83231 0.78260 1.20273 1.21552 1.21624 1.21299 1.00282 0.97256 0.91158 1.20968 0.91795 1.01264 0.99267 1.21015 0.92397 1.03573 0.87378 1.98366 1.76631 1.94651 1.33992 0.92606 0.92703 0.92566 0.91655 0.91546 0.90194 0.90261 0.83709 0.77138 0.91950 0.91066 0.93268 0.93932 0.95191 0.93385 0.98360 0.93645 0.84477 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.90 5.86 -26.73 -0.16 -1.06 16 3 C -0.08 -0.67 4.79 -27.89 -0.13 -0.80 16 4 C -0.08 -0.78 5.13 -104.65 -0.54 -1.32 16 5 C -0.05 -0.57 9.21 -39.20 -0.36 -0.93 16 6 C -0.12 -1.44 5.87 -104.97 -0.62 -2.06 16 7 C 0.55 8.72 7.77 -12.35 -0.10 8.62 16 8 O -0.53 -10.79 16.35 5.32 0.09 -10.71 16 9 N -0.72 -10.64 5.51 -61.27 -0.34 -10.97 16 10 C 0.09 1.79 6.00 -4.04 -0.02 1.77 16 11 C 0.14 2.77 5.82 -4.04 -0.02 2.74 16 12 N -0.60 -14.71 2.93 -181.12 -0.53 -15.24 16 13 C 0.16 3.95 9.01 59.84 0.54 4.49 16 14 C -0.26 -7.05 9.67 -15.06 -0.15 -7.19 16 15 H 0.07 1.86 7.84 -52.49 -0.41 1.45 16 16 C 0.00 0.08 5.13 -17.43 -0.09 -0.01 16 17 N -0.91 -26.39 10.59 55.49 0.59 -25.80 16 18 Si 0.91 21.81 29.57 -169.99 -5.03 16.78 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 C -0.08 -0.76 9.54 -39.19 -0.37 -1.13 16 23 C -0.11 -0.98 9.81 -39.61 -0.39 -1.37 16 24 C -0.02 -0.15 6.32 -39.38 -0.25 -0.40 16 25 Cl -0.07 -0.54 26.59 -51.86 -1.38 -1.91 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.51 7.25 -51.93 -0.38 0.14 16 31 H 0.08 0.60 7.34 -51.93 -0.38 0.22 16 32 H 0.08 0.59 8.00 -51.93 -0.42 0.18 16 33 H 0.15 1.72 7.63 -52.48 -0.40 1.32 16 34 H 0.39 4.39 6.50 -40.82 -0.27 4.12 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 38 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 39 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 40 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 41 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.14 0.97 6.40 -52.49 -0.34 0.63 16 44 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -31.97 377.23 -9.87 -41.84 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.67 Total: -0.44 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.29 Total: 0.77 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.28 Total: -52.02 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.38 Total: -1.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.97 -9.87 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753071111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.700 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds