Wall clock time and date at job start Tue Mar 31 2020 14:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47393 * 2 1 4 4 N 1.46493 * 109.47500 * 120.00291 * 2 1 3 5 5 C 1.36944 * 120.00088 * 302.23603 * 4 2 1 6 6 H 1.08001 * 119.99559 * 321.91749 * 5 4 2 7 7 C 1.38812 * 120.00194 * 141.91049 * 5 4 2 8 8 N 1.31617 * 119.99808 * 338.45236 * 7 5 4 9 9 Si 1.86794 * 119.99947 * 158.45592 * 7 5 4 10 10 H 1.48503 * 109.47345 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47291 * 120.00055 * 9 7 5 12 12 H 1.48503 * 109.47310 * 239.99987 * 9 7 5 13 13 C 1.46497 * 120.00337 * 122.23227 * 4 2 1 14 14 C 1.53004 * 109.46890 * 90.00440 * 13 4 2 15 15 C 1.53001 * 109.47207 * 180.02562 * 14 13 4 16 16 N 1.46493 * 109.47365 * 179.97438 * 15 14 13 17 17 C 1.34776 * 120.00422 * 179.97438 * 16 15 14 18 18 O 1.21565 * 119.99924 * 0.02562 * 17 16 15 19 19 C 1.47768 * 120.00374 * 180.02562 * 17 16 15 20 20 C 1.39625 * 120.15594 * 0.02562 * 19 17 16 21 21 C 1.37899 * 119.86981 * 179.97438 * 20 19 17 22 22 C 1.38418 * 120.17784 * 0.02736 * 21 20 19 23 23 C 1.38270 * 120.31934 * 359.97438 * 22 21 20 24 24 C 1.38149 * 120.13017 * 359.96366 * 23 22 21 25 25 Cl 1.73602 * 120.09486 * 179.97438 * 24 23 22 26 26 H 1.09010 * 109.46561 * 305.40039 * 1 2 3 27 27 H 1.08997 * 109.47556 * 65.39665 * 1 2 3 28 28 H 1.08996 * 109.47359 * 185.40602 * 1 2 3 29 29 H 1.09009 * 109.46838 * 240.00131 * 2 1 3 30 30 H 1.08998 * 109.47417 * 180.44975 * 3 2 1 31 31 H 1.09006 * 109.46664 * 300.44453 * 3 2 1 32 32 H 1.08997 * 109.46832 * 60.44458 * 3 2 1 33 33 H 0.97005 * 119.99837 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47591 * 330.00035 * 13 4 2 35 35 H 1.08998 * 109.47550 * 210.00015 * 13 4 2 36 36 H 1.08998 * 109.47441 * 60.00217 * 14 13 4 37 37 H 1.09005 * 109.47042 * 299.99913 * 14 13 4 38 38 H 1.09004 * 109.47136 * 59.99541 * 15 14 13 39 39 H 1.08992 * 109.47240 * 300.00037 * 15 14 13 40 40 H 0.97006 * 119.99949 * 0.02562 * 16 15 14 41 41 H 1.08006 * 120.06177 * 0.25094 * 20 19 17 42 42 H 1.07992 * 119.91162 * 179.97438 * 21 20 19 43 43 H 1.08004 * 119.83914 * 179.97438 * 22 21 20 44 44 H 1.08007 * 119.93266 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 1.6503 -0.2502 2.4394 6 1 1.5675 0.8089 2.6344 7 6 1.3834 -1.1648 3.4489 8 7 1.0660 -2.4056 3.1456 9 14 1.4746 -0.6345 5.2376 10 1 1.8497 0.8005 5.3101 11 1 0.1512 -0.8338 5.8812 12 1 2.4961 -1.4488 5.9439 13 6 2.9006 -1.8525 1.0622 14 6 4.3581 -1.3873 1.0481 15 6 5.2795 -2.6006 0.9076 16 7 6.6749 -2.1552 0.8935 17 6 7.6693 -3.0575 0.7779 18 8 7.4082 -4.2411 0.6848 19 6 9.0770 -2.6082 0.7642 20 6 9.3807 -1.2496 0.8715 21 6 10.6964 -0.8369 0.8586 22 6 11.7158 -1.7656 0.7392 23 6 11.4237 -3.1129 0.6325 24 6 10.1102 -3.5408 0.6452 25 17 9.7445 -5.2325 0.5105 26 1 -0.3633 0.5954 0.8378 27 1 -0.3634 0.4278 -0.9343 28 1 -0.3634 -1.0230 0.0968 29 1 1.8933 -0.5139 -0.8901 30 1 3.1300 1.4425 -0.0081 31 1 1.6702 1.9586 -0.8860 32 1 1.6833 1.9540 0.8939 33 1 0.8799 -3.0449 3.8511 34 1 2.6765 -2.3736 0.1314 35 1 2.7428 -2.5274 1.9034 36 1 4.5822 -0.8663 1.9789 37 1 4.5159 -0.7123 0.2068 38 1 5.0552 -3.1213 -0.0234 39 1 5.1218 -3.2759 1.7485 40 1 6.8834 -1.2107 0.9682 41 1 8.5868 -0.5238 0.9688 42 1 10.9320 0.2138 0.9411 43 1 12.7444 -1.4362 0.7293 44 1 12.2240 -3.8321 0.5391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753292149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:19 Heat of formation + Delta-G solvation = -0.674684 kcal Electronic energy + Delta-G solvation = -24716.967644 eV Core-core repulsion = 21081.701297 eV Total energy + Delta-G solvation = -3635.266347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.27224 -38.46883 -36.76984 -36.48255 -34.99061 -32.60569 -32.07714 -31.00509 -30.97579 -28.71727 -26.18518 -25.56488 -24.12249 -23.17336 -22.50976 -20.90968 -20.36242 -19.50970 -18.20656 -16.60432 -16.38270 -15.94391 -15.46872 -15.15273 -15.03422 -14.82220 -14.31498 -14.19494 -14.11513 -13.60093 -13.39821 -13.06144 -12.82652 -12.43930 -12.22340 -11.86238 -11.68633 -11.65608 -11.50132 -11.42258 -11.31169 -11.15646 -10.96824 -10.76205 -10.62624 -10.39384 -10.18494 -9.93283 -9.59327 -9.54559 -9.43793 -9.41983 -9.07227 -8.78601 -8.46007 -6.53591 -5.76801 -3.34878 0.47098 0.82877 2.01914 2.75518 3.23309 3.35268 3.44726 3.45769 3.55189 4.35590 4.44389 4.48479 4.59268 4.89378 4.94980 5.17269 5.23222 5.37006 5.40243 5.67200 5.71985 5.78518 5.85373 5.95128 5.96392 6.04283 6.19193 6.31727 6.32160 6.40817 6.42174 6.44322 6.68352 6.72661 6.74874 6.81317 6.81563 7.12052 7.20959 7.35625 7.61528 7.68509 7.86101 8.30334 8.55356 9.22052 9.84589 10.43880 11.23147 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.002749 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.636994 B =10184.750289 C =10484.589497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.162 3.838 3 C -0.153 4.153 4 N -0.579 5.579 5 C -0.253 4.253 6 H 0.059 0.941 7 C 0.013 3.987 8 N -0.885 5.885 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.288 1.288 13 C 0.153 3.847 14 C -0.146 4.146 15 C 0.122 3.878 16 N -0.719 5.719 17 C 0.545 3.455 18 O -0.517 6.517 19 C -0.125 4.125 20 C -0.076 4.076 21 C -0.125 4.125 22 C -0.087 4.087 23 C -0.123 4.123 24 C 0.012 3.988 25 Cl -0.031 7.031 26 H 0.053 0.947 27 H 0.028 0.972 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.253 0.747 34 H 0.025 0.975 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.396 0.604 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.894 2.804 -6.564 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 C -0.213 4.213 4 N -0.300 5.300 5 C -0.383 4.383 6 H 0.077 0.923 7 C -0.187 4.187 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.215 1.215 13 C 0.025 3.975 14 C -0.186 4.186 15 C -0.001 4.001 16 N -0.371 5.371 17 C 0.331 3.669 18 O -0.393 6.393 19 C -0.129 4.129 20 C -0.095 4.095 21 C -0.143 4.143 22 C -0.106 4.106 23 C -0.142 4.142 24 C -0.016 4.016 25 Cl -0.001 7.001 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.231 0.769 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 19.545 1.633 -6.544 20.676 hybrid contribution 0.158 0.642 1.082 1.268 sum 19.704 2.275 -5.462 20.573 Atomic orbital electron populations 1.22061 0.97889 1.01582 0.98928 1.20412 0.92457 0.91768 0.89839 1.22180 1.00032 0.99022 1.00017 1.43850 1.51765 1.33264 1.01075 1.18924 1.41487 0.91273 0.86632 0.92300 1.25170 0.98515 0.96420 0.98598 1.70012 1.46959 1.04185 1.31530 0.86433 0.77381 0.78274 0.85914 1.20172 1.21730 1.21507 1.20773 0.84920 0.90819 1.00954 1.22506 0.98786 0.95896 1.01427 1.21504 0.78128 0.98443 1.02045 1.46101 1.07056 1.09927 1.74036 1.18102 0.84652 0.86314 0.77881 1.90872 1.84143 1.15895 1.48425 1.19955 0.93774 0.93466 1.05685 1.21376 0.97556 0.93910 0.96611 1.21212 0.92301 1.00416 1.00382 1.21315 0.99993 0.92223 0.97023 1.21096 0.94504 0.96793 1.01795 1.21091 0.93551 0.86920 1.00081 1.98426 1.94982 1.11282 1.95455 0.92784 0.95298 0.92997 0.93728 0.93928 0.94613 0.92784 0.93662 0.95685 0.88795 0.91663 0.93251 0.91810 0.91312 0.76904 0.84605 0.84735 0.84713 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.03 37.16 0.34 -2.59 16 2 C 0.16 3.29 3.36 -67.93 -0.23 3.06 16 3 C -0.15 -2.74 9.20 37.16 0.34 -2.40 16 4 N -0.58 -13.51 2.36 -165.66 -0.39 -13.90 16 5 C -0.25 -6.53 8.23 -15.06 -0.12 -6.66 16 6 H 0.06 1.54 6.95 -52.49 -0.36 1.18 16 7 C 0.01 0.36 4.94 -17.43 -0.09 0.27 16 8 N -0.88 -24.78 11.52 55.49 0.64 -24.14 16 9 Si 0.89 21.09 29.60 -169.99 -5.03 16.06 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.15 3.35 5.27 -4.04 -0.02 3.33 16 14 C -0.15 -2.60 5.65 -26.73 -0.15 -2.75 16 15 C 0.12 2.02 5.67 -4.04 -0.02 1.99 16 16 N -0.72 -10.12 5.51 -61.28 -0.34 -10.45 16 17 C 0.54 8.31 7.77 -12.36 -0.10 8.21 16 18 O -0.52 -9.58 13.97 5.31 0.07 -9.50 16 19 C -0.12 -1.54 5.88 -104.94 -0.62 -2.16 16 20 C -0.08 -0.69 9.54 -39.19 -0.37 -1.07 16 21 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 22 C -0.09 -0.60 10.04 -39.50 -0.40 -1.00 16 23 C -0.12 -1.08 9.82 -39.60 -0.39 -1.47 16 24 C 0.01 0.14 6.35 -39.07 -0.25 -0.11 16 25 Cl -0.03 -0.42 26.02 -51.86 -1.35 -1.77 16 26 H 0.05 1.15 7.80 -51.92 -0.40 0.74 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.86 7.78 -51.92 -0.40 0.45 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 1.03 7.06 -51.93 -0.37 0.67 16 33 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.02 0.53 7.90 -51.93 -0.41 0.12 16 35 H 0.09 2.38 5.56 -51.93 -0.29 2.10 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.40 4.48 6.51 -40.82 -0.27 4.21 16 41 H 0.14 0.98 6.41 -52.48 -0.34 0.65 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 44 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -30.53 374.68 -9.85 -40.38 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.63 Total: 2.31 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.47 Total: -4.63 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.09 Total: -48.50 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.35 Total: -1.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.53 -9.85 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753292149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.706 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds