Wall clock time and date at job start Tue Mar 31 2020 14:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46872 * 2 1 4 4 H 1.09001 * 109.47105 * 303.22064 * 3 2 1 5 5 C 1.52997 * 109.47076 * 183.22018 * 3 2 1 6 6 N 1.46494 * 109.47486 * 185.00382 * 5 3 2 7 7 C 1.34779 * 120.00522 * 180.02562 * 6 5 3 8 8 O 1.21274 * 119.99419 * 359.71764 * 7 6 5 9 9 C 1.50696 * 119.99955 * 179.72243 * 7 6 5 10 10 S 1.81007 * 109.46871 * 179.97438 * 9 7 6 11 11 C 1.76200 * 100.00109 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99486 * 0.02562 * 11 10 9 13 13 C 1.38789 * 119.99941 * 179.97438 * 11 10 9 14 14 N 1.31631 * 120.00245 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00042 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46623 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47345 * 120.00230 * 15 13 11 18 18 H 1.48497 * 109.46936 * 240.00492 * 15 13 11 19 19 N 1.46901 * 109.47047 * 63.22083 * 3 2 1 20 20 C 1.46905 * 110.99923 * 58.29822 * 19 3 2 21 21 C 1.50705 * 109.47051 * 174.61036 * 20 19 3 22 22 N 1.31797 * 119.11881 * 269.73242 * 21 20 19 23 23 C 1.32340 * 120.81509 * 179.76298 * 22 21 20 24 24 C 1.38593 * 119.10100 * 0.49592 * 23 22 21 25 25 C 1.38588 * 118.40302 * 359.75723 * 24 23 22 26 26 N 1.31789 * 119.12519 * 89.99877 * 21 20 19 27 27 H 1.09001 * 109.47034 * 173.66494 * 1 2 3 28 28 H 1.09000 * 109.47591 * 293.66414 * 1 2 3 29 29 H 1.08997 * 109.47357 * 53.66535 * 1 2 3 30 30 H 1.08999 * 109.46947 * 240.00108 * 2 1 3 31 31 H 1.08996 * 109.46761 * 119.99912 * 2 1 3 32 32 H 1.08999 * 109.46996 * 64.99639 * 5 3 2 33 33 H 1.09010 * 109.47157 * 305.00122 * 5 3 2 34 34 H 0.97005 * 119.99752 * 359.71877 * 6 5 3 35 35 H 1.09000 * 109.47130 * 299.99057 * 9 7 6 36 36 H 1.08995 * 109.47590 * 59.99942 * 9 7 6 37 37 H 0.97006 * 120.00003 * 179.97438 * 14 13 11 38 38 H 1.00900 * 111.00034 * 294.34337 * 19 3 2 39 39 H 1.08998 * 109.46946 * 294.60828 * 20 19 3 40 40 H 1.09001 * 109.46957 * 54.61112 * 20 19 3 41 41 H 1.07995 * 120.44233 * 180.23226 * 23 22 21 42 42 H 1.08007 * 120.79349 * 179.77408 * 24 23 22 43 43 H 1.08002 * 120.44810 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6302 1.9728 -0.8597 5 6 3.5678 1.4434 -0.0810 6 7 4.0625 2.8170 0.0391 7 6 5.3870 3.0627 -0.0055 8 8 6.1694 2.1459 -0.1400 9 6 5.8954 4.4764 0.1118 10 16 7.7030 4.4772 0.0176 11 6 8.0170 6.2037 0.1761 12 1 7.1941 6.8940 0.2894 13 6 9.3217 6.6765 0.1565 14 7 10.3246 5.8351 0.0189 15 14 9.6546 8.5069 0.3253 16 1 8.3671 9.2331 0.4666 17 1 10.4933 8.7488 1.5267 18 1 10.3681 8.9937 -0.8827 19 7 1.6148 2.1122 1.2365 20 6 2.1161 1.4004 2.4198 21 6 1.7745 2.1852 3.6602 22 7 2.6308 3.0813 4.1082 23 6 2.3630 3.7926 5.1916 24 6 1.1689 3.5770 5.8614 25 6 0.2964 2.6226 5.3628 26 7 0.6300 1.9533 4.2710 27 1 -0.3633 -1.0214 -0.1134 28 1 -0.3634 0.4125 0.9412 29 1 -0.3634 0.6089 -0.8278 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8811 1.0267 -1.0383 33 1 3.9750 0.8384 0.7292 34 1 3.4366 3.5503 0.1464 35 1 5.4887 5.0775 -0.7014 36 1 5.5816 4.8973 1.0670 37 1 11.2366 6.1656 0.0048 38 1 0.6108 2.2067 1.2697 39 1 1.6532 0.4151 2.4742 40 1 3.1980 1.2900 2.3461 41 1 3.0673 4.5280 5.5513 42 1 0.9242 4.1394 6.7504 43 1 -0.6433 2.4281 5.8583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753467642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:46 Heat of formation + Delta-G solvation = 9.991751 kcal Electronic energy + Delta-G solvation = -24483.689211 eV Core-core repulsion = 20883.221853 eV Total energy + Delta-G solvation = -3600.467359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27562 -39.36771 -38.00252 -34.02029 -33.92931 -33.37285 -32.35671 -31.38194 -29.87259 -27.92963 -26.49098 -25.39929 -24.79912 -23.39154 -22.98260 -20.33844 -19.88852 -17.95181 -17.71877 -17.64919 -16.43950 -16.21287 -15.92985 -15.44042 -15.34348 -15.01689 -14.81196 -14.74178 -14.19208 -13.90280 -13.81549 -13.69340 -13.36617 -13.08497 -12.77488 -12.52250 -12.43958 -12.22147 -11.73918 -11.50307 -11.26354 -11.09301 -11.08497 -11.04096 -11.01756 -10.93945 -10.69103 -9.88525 -9.72330 -9.46098 -9.23658 -9.00793 -8.79781 -8.62289 -8.12502 -6.40101 -6.14740 -3.83667 0.58307 0.83468 3.15083 3.25714 3.28801 3.32191 3.34433 3.42301 3.60526 3.85990 3.89393 4.16076 4.27608 4.32280 4.49631 4.62619 4.71122 4.73694 4.81672 5.00101 5.03793 5.15635 5.17090 5.20293 5.31531 5.38906 5.39156 5.56138 5.60316 5.64639 5.71364 5.82611 5.90830 5.96858 6.06302 6.10198 6.30458 6.54580 6.73759 6.86596 6.99505 7.67103 7.86253 7.98987 8.42914 8.82980 9.30733 10.92764 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.002986 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.903928 B = 9374.748888 C =11237.592816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.078 3.922 4 H 0.095 0.905 5 C 0.128 3.872 6 N -0.723 5.723 7 C 0.532 3.468 8 O -0.526 6.526 9 C -0.150 4.150 10 S -0.063 6.063 11 C -0.532 4.532 12 H 0.072 0.928 13 C 0.072 3.928 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.671 5.671 20 C 0.120 3.880 21 C 0.324 3.676 22 N -0.493 5.493 23 C 0.151 3.849 24 C -0.232 4.232 25 C 0.144 3.856 26 N -0.520 5.520 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.405 0.595 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.267 0.733 38 H 0.346 0.654 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.170 0.830 42 H 0.147 0.853 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.535 -8.427 7.791 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C -0.032 4.032 4 H 0.113 0.887 5 C 0.003 3.997 6 N -0.378 5.378 7 C 0.318 3.682 8 O -0.402 6.402 9 C -0.301 4.301 10 S 0.164 5.836 11 C -0.680 4.680 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.504 5.504 15 Si 0.744 3.256 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.303 5.303 20 C -0.010 4.010 21 C 0.056 3.944 22 N -0.206 5.206 23 C -0.015 4.015 24 C -0.254 4.254 25 C -0.022 4.022 26 N -0.234 5.234 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.240 0.760 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.165 0.835 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.187 0.813 42 H 0.165 0.835 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -23.283 -10.054 6.727 26.238 hybrid contribution -1.849 2.390 1.328 3.301 sum -25.132 -7.664 8.055 27.481 Atomic orbital electron populations 1.21769 0.95282 1.02138 1.01873 1.22203 0.96590 0.97734 1.03424 1.21937 0.95220 0.93307 0.92719 0.88677 1.21285 0.91435 0.84995 1.01949 1.45768 1.07205 1.08699 1.76114 1.20248 0.81626 0.90990 0.75342 1.90682 1.55445 1.46129 1.47894 1.23493 1.06312 0.95462 1.04809 1.85353 0.92184 1.10503 1.95559 1.22921 0.95152 0.92372 1.57567 0.90947 1.24984 0.95101 0.98847 0.94729 1.70038 0.99132 1.34320 1.46917 0.86133 0.78365 0.83221 0.77871 1.19632 1.20638 1.20632 1.60444 1.17674 1.51779 1.00365 1.20707 1.02580 0.93318 0.84425 1.23047 0.85472 0.90807 0.95044 1.68357 1.33564 1.05944 1.12758 1.23392 0.94514 0.94559 0.89039 1.22946 0.97311 1.01719 1.03467 1.23182 0.98640 0.89701 0.90649 1.68234 1.18875 1.26903 1.09429 0.92378 0.92694 0.92405 0.90693 0.91211 0.91237 0.91855 0.76045 0.89511 0.89217 0.92347 0.83493 0.92013 0.87713 0.81274 0.83534 0.81663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.49 37.16 0.35 -0.55 16 2 C -0.16 -1.10 5.11 -26.73 -0.14 -1.23 16 3 C 0.08 0.64 2.72 -67.71 -0.18 0.46 16 4 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 5 C 0.13 1.52 4.72 -4.05 -0.02 1.50 16 6 N -0.72 -10.42 5.39 -60.30 -0.32 -10.74 16 7 C 0.53 10.49 7.85 -10.99 -0.09 10.40 16 8 O -0.53 -12.42 15.86 5.56 0.09 -12.33 16 9 C -0.15 -3.21 6.16 36.00 0.22 -2.99 16 10 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 11 C -0.53 -15.53 9.50 30.94 0.29 -15.24 16 12 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.66 13.22 55.49 0.73 -25.93 16 15 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 N -0.67 -5.91 5.76 -107.98 -0.62 -6.54 16 20 C 0.12 1.21 5.28 -4.97 -0.03 1.18 16 21 C 0.32 3.68 7.20 -157.19 -1.13 2.55 16 22 N -0.49 -6.16 10.34 -10.72 -0.11 -6.27 16 23 C 0.15 1.43 11.31 -17.20 -0.19 1.24 16 24 C -0.23 -1.64 10.17 -39.32 -0.40 -2.04 16 25 C 0.14 1.10 11.30 -17.21 -0.19 0.91 16 26 N -0.52 -5.26 10.33 -10.73 -0.11 -5.37 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.34 7.19 -51.93 -0.37 -0.03 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.51 6.32 -51.93 -0.33 0.18 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.82 6.59 -51.92 -0.34 0.48 16 34 H 0.40 5.17 8.14 -40.82 -0.33 4.84 16 35 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 36 H 0.09 1.83 8.14 -51.92 -0.42 1.40 16 37 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.35 2.76 7.51 -39.29 -0.30 2.46 16 39 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 40 H 0.10 1.26 6.19 -51.93 -0.32 0.94 16 41 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.15 0.57 8.06 -52.48 -0.42 0.14 16 43 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -36.56 374.38 -9.64 -46.20 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.10 Total: 4.32 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.60 Total: -1.80 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.43 Total: -54.84 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.56 -9.64 -46.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.192 kcal (2) G-P(sol) polarization free energy of solvation -36.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds