Wall clock time and date at job start Tue Mar 31 2020 14:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46872 * 2 1 4 4 H 1.09001 * 109.47105 * 303.22064 * 3 2 1 5 5 C 1.52997 * 109.47076 * 183.22018 * 3 2 1 6 6 N 1.46494 * 109.47486 * 185.00382 * 5 3 2 7 7 C 1.34779 * 120.00522 * 180.02562 * 6 5 3 8 8 O 1.21274 * 119.99419 * 359.71764 * 7 6 5 9 9 C 1.50696 * 119.99955 * 179.72243 * 7 6 5 10 10 S 1.81007 * 109.46871 * 179.97438 * 9 7 6 11 11 C 1.76200 * 100.00109 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99486 * 0.02562 * 11 10 9 13 13 C 1.38789 * 119.99941 * 179.97438 * 11 10 9 14 14 N 1.31631 * 120.00245 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00042 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46623 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47345 * 120.00230 * 15 13 11 18 18 H 1.48497 * 109.46936 * 240.00492 * 15 13 11 19 19 N 1.46901 * 109.47047 * 63.22083 * 3 2 1 20 20 C 1.46905 * 110.99923 * 58.29822 * 19 3 2 21 21 C 1.50705 * 109.47051 * 174.61036 * 20 19 3 22 22 N 1.31797 * 119.11881 * 269.73242 * 21 20 19 23 23 C 1.32340 * 120.81509 * 179.76298 * 22 21 20 24 24 C 1.38593 * 119.10100 * 0.49592 * 23 22 21 25 25 C 1.38588 * 118.40302 * 359.75723 * 24 23 22 26 26 N 1.31789 * 119.12519 * 89.99877 * 21 20 19 27 27 H 1.09001 * 109.47034 * 173.66494 * 1 2 3 28 28 H 1.09000 * 109.47591 * 293.66414 * 1 2 3 29 29 H 1.08997 * 109.47357 * 53.66535 * 1 2 3 30 30 H 1.08999 * 109.46947 * 240.00108 * 2 1 3 31 31 H 1.08996 * 109.46761 * 119.99912 * 2 1 3 32 32 H 1.08999 * 109.46996 * 64.99639 * 5 3 2 33 33 H 1.09010 * 109.47157 * 305.00122 * 5 3 2 34 34 H 0.97005 * 119.99752 * 359.71877 * 6 5 3 35 35 H 1.09000 * 109.47130 * 299.99057 * 9 7 6 36 36 H 1.08995 * 109.47590 * 59.99942 * 9 7 6 37 37 H 0.97006 * 120.00003 * 179.97438 * 14 13 11 38 38 H 1.00900 * 111.00034 * 294.34337 * 19 3 2 39 39 H 1.08998 * 109.46946 * 294.60828 * 20 19 3 40 40 H 1.09001 * 109.46957 * 54.61112 * 20 19 3 41 41 H 1.07995 * 120.44233 * 180.23226 * 23 22 21 42 42 H 1.08007 * 120.79349 * 179.77408 * 24 23 22 43 43 H 1.08002 * 120.44810 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6302 1.9728 -0.8597 5 6 3.5678 1.4434 -0.0810 6 7 4.0625 2.8170 0.0391 7 6 5.3870 3.0627 -0.0055 8 8 6.1694 2.1459 -0.1400 9 6 5.8954 4.4764 0.1118 10 16 7.7030 4.4772 0.0176 11 6 8.0170 6.2037 0.1761 12 1 7.1941 6.8940 0.2894 13 6 9.3217 6.6765 0.1565 14 7 10.3246 5.8351 0.0189 15 14 9.6546 8.5069 0.3253 16 1 8.3671 9.2331 0.4666 17 1 10.4933 8.7488 1.5267 18 1 10.3681 8.9937 -0.8827 19 7 1.6148 2.1122 1.2365 20 6 2.1161 1.4004 2.4198 21 6 1.7745 2.1852 3.6602 22 7 2.6308 3.0813 4.1082 23 6 2.3630 3.7926 5.1916 24 6 1.1689 3.5770 5.8614 25 6 0.2964 2.6226 5.3628 26 7 0.6300 1.9533 4.2710 27 1 -0.3633 -1.0214 -0.1134 28 1 -0.3634 0.4125 0.9412 29 1 -0.3634 0.6089 -0.8278 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8811 1.0267 -1.0383 33 1 3.9750 0.8384 0.7292 34 1 3.4366 3.5503 0.1464 35 1 5.4887 5.0775 -0.7014 36 1 5.5816 4.8973 1.0670 37 1 11.2366 6.1656 0.0048 38 1 0.6108 2.2067 1.2697 39 1 1.6532 0.4151 2.4742 40 1 3.1980 1.2900 2.3461 41 1 3.0673 4.5280 5.5513 42 1 0.9242 4.1394 6.7504 43 1 -0.6433 2.4281 5.8583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753467642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:45 Heat of formation + Delta-G solvation = -17.894718 kcal Electronic energy + Delta-G solvation = -24484.898459 eV Core-core repulsion = 20883.221853 eV Total energy + Delta-G solvation = -3601.676607 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96077 -40.67406 -39.04404 -35.23734 -34.64388 -34.56939 -34.12322 -32.02126 -31.33836 -28.98043 -27.68349 -27.27207 -25.45214 -24.20703 -23.67319 -21.60440 -20.92013 -19.74523 -18.64161 -18.36153 -17.71598 -17.23075 -17.08471 -16.86923 -16.35539 -16.34788 -15.93834 -15.76393 -15.63662 -14.83114 -14.80043 -14.57715 -14.40523 -14.38667 -14.08790 -13.79935 -13.36633 -13.16571 -13.13714 -12.90573 -12.74318 -12.61114 -12.30773 -11.91369 -11.81964 -11.76560 -11.71524 -11.67714 -11.14442 -10.89398 -10.51581 -10.25256 -10.17535 -9.98321 -9.49174 -8.64204 -8.33169 -6.10790 -0.07521 0.18429 1.29084 1.42052 1.48577 1.60315 1.69980 2.28024 2.37314 2.67442 2.91983 3.00615 3.25373 3.33822 3.42423 3.71420 3.77977 3.93940 4.10779 4.13220 4.17063 4.23018 4.30328 4.34150 4.38890 4.46520 4.54171 4.56955 4.63751 4.78687 4.81969 4.93655 4.95090 5.14794 5.23852 5.38679 5.43267 5.47078 5.52468 5.85886 6.09110 6.21650 6.33154 6.63125 7.07899 7.16272 7.34209 8.76424 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.002986 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.903928 B = 9374.748888 C =11237.592816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C 0.091 3.909 4 H 0.112 0.888 5 C 0.126 3.874 6 N -0.697 5.697 7 C 0.532 3.468 8 O -0.571 6.571 9 C -0.126 4.126 10 S -0.149 6.149 11 C -0.545 4.545 12 H 0.080 0.920 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 1.000 3.000 16 H -0.257 1.257 17 H -0.273 1.273 18 H -0.273 1.273 19 N -0.672 5.672 20 C 0.128 3.872 21 C 0.306 3.694 22 N -0.535 5.535 23 C 0.128 3.872 24 C -0.216 4.216 25 C 0.138 3.862 26 N -0.531 5.531 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.416 0.584 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.271 0.729 38 H 0.355 0.645 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.183 0.817 42 H 0.183 0.817 43 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.472 -6.984 8.572 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C -0.019 4.019 4 H 0.129 0.871 5 C 0.001 3.999 6 N -0.350 5.350 7 C 0.318 3.682 8 O -0.451 6.451 9 C -0.277 4.277 10 S 0.078 5.922 11 C -0.693 4.693 12 H 0.099 0.901 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.181 1.181 17 H -0.198 1.198 18 H -0.198 1.198 19 N -0.305 5.305 20 C -0.002 4.002 21 C 0.038 3.962 22 N -0.250 5.250 23 C -0.037 4.037 24 C -0.237 4.237 25 C -0.028 4.028 26 N -0.246 5.246 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.253 0.747 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.175 0.825 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.200 0.800 42 H 0.201 0.799 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -26.291 -8.607 7.517 28.667 hybrid contribution -1.069 1.882 1.163 2.457 sum -27.360 -6.725 8.680 29.481 Atomic orbital electron populations 1.21721 0.94055 1.02628 1.02091 1.22148 0.97481 0.96437 1.03380 1.21848 0.92280 0.94667 0.93076 0.87055 1.21486 0.94045 0.82936 1.01400 1.45545 1.05374 1.10442 1.73612 1.19998 0.83024 0.89718 0.75460 1.90668 1.56941 1.46959 1.50506 1.23324 1.00946 0.97305 1.06143 1.85514 0.99067 1.11716 1.95905 1.23229 0.95917 0.92274 1.57875 0.90148 1.26137 0.94640 1.04577 0.93842 1.70197 0.99754 1.37035 1.47821 0.84893 0.78739 0.76098 0.78123 1.18108 1.19848 1.19808 1.60397 1.18296 1.51766 1.00051 1.20540 1.00968 0.93873 0.84856 1.23119 0.86110 0.91303 0.95688 1.68297 1.34822 1.07296 1.14572 1.23787 0.96103 0.94862 0.88934 1.23294 0.95733 1.00976 1.03734 1.23884 0.99919 0.89084 0.89894 1.68257 1.18370 1.27498 1.10454 0.91907 0.92858 0.91636 0.90259 0.91837 0.91327 0.93088 0.74695 0.87569 0.88056 0.92001 0.82491 0.91164 0.90333 0.80043 0.79931 0.78104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.49 71.98 0.68 -0.75 16 2 C -0.15 -1.91 5.11 30.60 0.16 -1.75 16 3 C 0.09 1.38 2.72 44.91 0.12 1.50 16 4 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 5 C 0.13 2.95 4.72 86.38 0.41 3.36 16 6 N -0.70 -19.78 5.39 -463.07 -2.49 -22.28 16 7 C 0.53 21.28 7.85 87.66 0.69 21.97 16 8 O -0.57 -27.95 15.86 -3.01 -0.05 -28.00 16 9 C -0.13 -5.41 6.16 71.23 0.44 -4.97 16 10 S -0.15 -8.63 20.57 -56.49 -1.16 -9.80 16 11 C -0.55 -32.16 9.50 67.95 0.65 -31.51 16 12 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 13 C 0.01 0.73 5.49 84.85 0.47 1.20 16 14 N -0.91 -57.11 13.22 21.65 0.29 -56.82 16 15 Si 1.00 44.56 29.55 68.60 2.03 46.59 16 16 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 N -0.67 -11.13 5.76 -495.55 -2.86 -13.98 16 20 C 0.13 2.58 5.28 85.56 0.45 3.03 16 21 C 0.31 6.86 7.20 138.75 1.00 7.86 16 22 N -0.54 -13.43 10.34 -187.84 -1.94 -15.37 16 23 C 0.13 2.32 11.31 84.70 0.96 3.28 16 24 C -0.22 -2.51 10.17 22.44 0.23 -2.28 16 25 C 0.14 1.76 11.30 84.70 0.96 2.71 16 26 N -0.53 -10.03 10.33 -187.85 -1.94 -11.97 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.55 7.19 -2.39 -0.02 0.53 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.88 6.32 -2.39 -0.02 0.87 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.37 6.59 -2.38 -0.02 1.35 16 34 H 0.42 10.08 8.14 -92.70 -0.76 9.32 16 35 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 36 H 0.10 4.10 8.14 -2.40 -0.02 4.08 16 37 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 38 H 0.35 5.05 7.51 -89.69 -0.67 4.37 16 39 H 0.07 1.24 6.51 -2.39 -0.02 1.23 16 40 H 0.08 1.98 6.19 -2.39 -0.01 1.97 16 41 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 42 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 43 H 0.20 0.95 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -82.52 374.38 -1.31 -83.83 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.39 Total: 24.16 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 7.20 Total: 3.64 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -8.95 Total: -120.43 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.05 Total: -28.00 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal Total: -82.52 -1.31 -83.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.934 kcal (2) G-P(sol) polarization free energy of solvation -82.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds