Wall clock time and date at job start Tue Mar 31 2020 14:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47347 * 2 1 4 4 H 1.09000 * 109.46922 * 55.37858 * 3 2 1 5 5 C 1.52993 * 109.47265 * 175.37933 * 3 2 1 6 6 N 1.46500 * 109.47106 * 175.00209 * 5 3 2 7 7 C 1.34776 * 119.99794 * 179.72668 * 6 5 3 8 8 O 1.21284 * 120.00158 * 0.27337 * 7 6 5 9 9 C 1.50703 * 120.00043 * 180.27565 * 7 6 5 10 10 S 1.81000 * 109.47335 * 179.97438 * 9 7 6 11 11 C 1.76199 * 99.99876 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.38801 * 119.99959 * 179.97438 * 11 10 9 14 14 N 1.31630 * 120.00220 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99749 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.46832 * 90.00002 * 15 13 11 17 17 H 1.48499 * 109.46893 * 209.99783 * 15 13 11 18 18 H 1.48491 * 109.47195 * 329.99898 * 15 13 11 19 19 N 1.46898 * 109.47332 * 295.38163 * 3 2 1 20 20 C 1.46897 * 110.99998 * 302.66869 * 19 3 2 21 21 C 1.50697 * 109.47513 * 185.60116 * 20 19 3 22 22 N 1.31794 * 119.12400 * 269.73147 * 21 20 19 23 23 C 1.32338 * 120.81898 * 179.75778 * 22 21 20 24 24 C 1.38600 * 119.10301 * 0.50681 * 23 22 21 25 25 C 1.38599 * 118.39871 * 359.74348 * 24 23 22 26 26 N 1.31801 * 119.12162 * 89.99548 * 21 20 19 27 27 H 1.09004 * 109.46903 * 59.34076 * 1 2 3 28 28 H 1.08996 * 109.47163 * 179.34007 * 1 2 3 29 29 H 1.08998 * 109.46711 * 299.34231 * 1 2 3 30 30 H 1.09002 * 109.47042 * 240.00180 * 2 1 3 31 31 H 1.08997 * 109.47251 * 120.00514 * 2 1 3 32 32 H 1.09000 * 109.47316 * 55.00024 * 5 3 2 33 33 H 1.08999 * 109.47215 * 294.99989 * 5 3 2 34 34 H 0.96994 * 119.99990 * 0.02562 * 6 5 3 35 35 H 1.09000 * 109.46919 * 299.99871 * 9 7 6 36 36 H 1.09004 * 109.47336 * 59.99628 * 9 7 6 37 37 H 0.97004 * 120.00029 * 180.02562 * 14 13 11 38 38 H 1.00903 * 111.00108 * 66.62163 * 19 3 2 39 39 H 1.08999 * 109.47260 * 305.60820 * 20 19 3 40 40 H 1.09009 * 109.47141 * 65.60157 * 20 19 3 41 41 H 1.08002 * 120.44973 * 180.27586 * 23 22 21 42 42 H 1.08002 * 120.80205 * 179.77437 * 24 23 22 43 43 H 1.07995 * 120.44695 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6108 1.9796 0.8457 5 6 3.5656 1.4440 0.1162 6 7 4.0631 2.8167 -0.0036 7 6 5.3858 3.0633 0.0746 8 8 6.1646 2.1483 0.2392 9 6 5.8971 4.4761 -0.0424 10 16 7.7013 4.4788 0.1023 11 6 8.0192 6.2037 -0.0660 12 1 7.1997 6.8924 -0.2088 13 6 9.3228 6.6774 -0.0139 14 7 9.5603 7.9661 -0.1391 15 14 10.7403 5.4862 0.2339 16 1 11.2277 5.0152 -1.0874 17 1 11.8437 6.1725 0.9526 18 1 10.2762 4.3241 1.0333 19 7 1.6437 2.1020 -1.2513 20 6 2.1526 1.3680 -2.4175 21 6 1.8460 2.1439 -3.6725 22 7 0.7106 1.9208 -4.3033 23 6 0.4052 2.5864 -5.4055 24 6 1.3025 3.5200 -5.8997 25 6 2.4883 3.7232 -5.2115 26 7 2.7229 3.0238 -4.1129 27 1 -0.3633 0.5241 -0.8841 28 1 -0.3633 -1.0275 -0.0118 29 1 -0.3633 0.5036 0.8958 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.9913 0.8325 -0.6794 33 1 3.8567 1.0352 1.0838 34 1 3.4402 3.5486 -0.1348 35 1 5.6093 4.8877 -1.0098 36 1 5.4682 5.0849 0.7536 37 1 10.4714 8.2971 -0.1031 38 1 0.6417 2.2104 -1.3012 39 1 3.2309 1.2397 -2.3239 40 1 1.6735 0.3902 -2.4687 41 1 -0.5290 2.4020 -5.9152 42 1 1.0829 4.0762 -6.7991 43 1 3.2109 4.4429 -5.5669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753467643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:49 Heat of formation + Delta-G solvation = 10.433520 kcal Electronic energy + Delta-G solvation = -24516.585153 eV Core-core repulsion = 20916.136951 eV Total energy + Delta-G solvation = -3600.448202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.29083 -39.45513 -38.08872 -34.09669 -33.95005 -33.41540 -32.37078 -31.41280 -29.99674 -28.00728 -26.53521 -25.53347 -24.81278 -23.45795 -23.01392 -20.40226 -19.98534 -17.97975 -17.74303 -17.67003 -16.47302 -16.29220 -16.02503 -15.48619 -15.37882 -15.04869 -14.91794 -14.88389 -14.23032 -13.92051 -13.77654 -13.66401 -13.40439 -13.22042 -12.85165 -12.72871 -12.50204 -12.29735 -11.82076 -11.60706 -11.28849 -11.19611 -11.12463 -11.10465 -11.06762 -10.95016 -10.50750 -9.90008 -9.79244 -9.47795 -9.36722 -8.94142 -8.84788 -8.71293 -8.40314 -6.82368 -6.22560 -3.92717 0.56811 0.82021 2.88624 3.16556 3.28165 3.37889 3.45421 3.56246 3.58761 3.78779 3.87506 4.11358 4.31290 4.39407 4.44365 4.58775 4.69436 4.69965 4.80561 4.87156 4.97544 5.00453 5.11158 5.14974 5.16616 5.29855 5.35191 5.48464 5.54904 5.56745 5.61487 5.77002 5.82032 5.89590 5.94385 6.08525 6.17509 6.50012 6.72005 6.77520 6.95414 7.84433 7.88201 8.00910 8.48864 8.69865 9.24083 10.86824 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.012625 B = 0.003035 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.321717 B = 9222.197180 C =10959.401598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.078 3.922 4 H 0.096 0.904 5 C 0.129 3.871 6 N -0.721 5.721 7 C 0.531 3.469 8 O -0.528 6.528 9 C -0.121 4.121 10 S -0.144 6.144 11 C -0.518 4.518 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.883 5.883 15 Si 0.857 3.143 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.235 1.235 19 N -0.671 5.671 20 C 0.120 3.880 21 C 0.324 3.676 22 N -0.520 5.520 23 C 0.144 3.856 24 C -0.232 4.232 25 C 0.151 3.849 26 N -0.493 5.493 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.406 0.594 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.270 0.730 38 H 0.346 0.654 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.166 0.834 42 H 0.147 0.853 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.084 -13.582 -7.635 28.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.032 4.032 4 H 0.114 0.886 5 C 0.004 3.996 6 N -0.375 5.375 7 C 0.317 3.683 8 O -0.404 6.404 9 C -0.271 4.271 10 S 0.082 5.918 11 C -0.666 4.666 12 H 0.106 0.894 13 C -0.114 4.114 14 N -0.520 5.520 15 Si 0.682 3.318 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.159 1.159 19 N -0.303 5.303 20 C -0.010 4.010 21 C 0.055 3.945 22 N -0.234 5.234 23 C -0.022 4.022 24 C -0.254 4.254 25 C -0.015 4.015 26 N -0.207 5.207 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.241 0.759 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.166 0.834 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.184 0.816 42 H 0.165 0.835 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -21.921 -15.029 -6.523 27.367 hybrid contribution -1.338 1.039 -1.236 2.097 sum -23.259 -13.990 -7.760 28.230 Atomic orbital electron populations 1.21766 0.95233 1.02116 1.01906 1.22206 0.96651 0.97688 1.03426 1.21924 0.95287 0.93503 0.92507 0.88630 1.21293 0.91565 0.84822 1.01925 1.45725 1.07332 1.09026 1.75440 1.20223 0.81771 0.90846 0.75508 1.90682 1.55633 1.46179 1.47905 1.23246 1.02452 0.95767 1.05680 1.84736 0.98659 1.12667 1.95718 1.22342 0.97161 0.89975 1.57110 0.89443 1.24714 0.98258 0.95021 0.93374 1.69947 1.21348 1.12514 1.48162 0.86730 0.82372 0.82568 0.80150 1.19265 1.20063 1.15894 1.60447 1.18403 1.51051 1.00385 1.20698 1.02591 0.93284 0.84426 1.23036 0.85426 0.90855 0.95138 1.68234 1.19759 1.26392 1.09059 1.23189 0.98559 0.89659 0.90746 1.22956 0.97176 1.01810 1.03439 1.23398 0.94866 0.94304 0.88908 1.68349 1.33063 1.06144 1.13116 0.92707 0.92381 0.92391 0.91198 0.90687 0.91817 0.91182 0.75875 0.88494 0.88735 0.92040 0.83418 0.87807 0.91974 0.81644 0.83501 0.81235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.69 37.16 0.36 -0.50 16 2 C -0.16 -1.04 5.11 -26.73 -0.14 -1.17 16 3 C 0.08 0.60 2.70 -67.72 -0.18 0.42 16 4 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 5 C 0.13 1.44 4.75 -4.05 -0.02 1.42 16 6 N -0.72 -9.85 5.39 -60.30 -0.32 -10.18 16 7 C 0.53 9.93 7.85 -10.98 -0.09 9.84 16 8 O -0.53 -11.81 15.86 5.55 0.09 -11.72 16 9 C -0.12 -2.47 6.16 36.01 0.22 -2.25 16 10 S -0.14 -3.78 18.55 -107.50 -1.99 -5.77 16 11 C -0.52 -15.30 10.04 30.94 0.31 -14.99 16 12 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 13 C 0.09 2.82 5.50 -17.43 -0.10 2.73 16 14 N -0.88 -27.11 13.97 55.49 0.78 -26.33 16 15 Si 0.86 22.25 27.74 -169.99 -4.72 17.53 16 16 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.24 -6.09 6.74 56.52 0.38 -5.71 16 19 N -0.67 -5.66 5.75 -108.00 -0.62 -6.28 16 20 C 0.12 1.16 5.27 -4.98 -0.03 1.13 16 21 C 0.32 3.58 7.20 -157.19 -1.13 2.45 16 22 N -0.52 -5.16 10.33 -10.72 -0.11 -5.27 16 23 C 0.14 1.08 11.31 -17.20 -0.19 0.89 16 24 C -0.23 -1.61 10.17 -39.31 -0.40 -2.01 16 25 C 0.15 1.42 11.30 -17.20 -0.19 1.22 16 26 N -0.49 -6.04 10.33 -10.73 -0.11 -6.15 16 27 H 0.05 0.32 6.90 -51.93 -0.36 -0.04 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.48 6.23 -51.93 -0.32 0.16 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.78 6.60 -51.93 -0.34 0.44 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.41 4.93 8.14 -40.82 -0.33 4.60 16 35 H 0.10 1.90 8.14 -51.92 -0.42 1.48 16 36 H 0.09 1.81 8.14 -51.91 -0.42 1.38 16 37 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.35 2.66 7.43 -39.29 -0.29 2.37 16 39 H 0.10 1.19 6.21 -51.93 -0.32 0.87 16 40 H 0.06 0.53 6.48 -51.92 -0.34 0.19 16 41 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -36.17 371.43 -9.10 -45.27 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.11 Total: 4.10 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.58 Total: -0.81 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.39 Total: -54.21 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.72 Total: 17.53 kcal Atomic # 16 Polarization: -3.78 SS G_CDS: -1.99 Total: -5.77 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.17 -9.10 -45.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.705 kcal (2) G-P(sol) polarization free energy of solvation -36.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds