Wall clock time and date at job start Tue Mar 31 2020 14:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47338 * 2 1 4 4 H 1.08998 * 109.47034 * 305.00156 * 3 2 1 5 5 C 1.52997 * 109.47428 * 184.99901 * 3 2 1 6 6 N 1.46493 * 109.47318 * 184.99940 * 5 3 2 7 7 C 1.34783 * 119.99822 * 180.02562 * 6 5 3 8 8 O 1.21275 * 119.99888 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99639 * 180.02562 * 7 6 5 10 10 H 1.09001 * 109.47540 * 59.99839 * 9 7 6 11 11 C 1.52999 * 109.47373 * 300.00179 * 9 7 6 12 12 C 1.50696 * 109.47089 * 180.02562 * 9 7 6 13 13 C 1.38247 * 119.98658 * 240.00292 * 12 9 7 14 14 C 1.38216 * 120.01497 * 179.97438 * 13 12 9 15 15 C 1.38357 * 119.98603 * 0.02562 * 14 13 12 16 16 Cl 1.73599 * 120.01134 * 180.02562 * 15 14 13 17 17 C 1.38347 * 119.97107 * 0.28224 * 15 14 13 18 18 C 1.38218 * 119.98923 * 359.44450 * 17 15 14 19 19 N 1.46502 * 109.46923 * 65.00161 * 3 2 1 20 20 C 1.36945 * 119.99834 * 274.99900 * 19 3 2 21 21 H 1.07996 * 119.99545 * 0.02562 * 20 19 3 22 22 C 1.38811 * 119.99591 * 179.97438 * 20 19 3 23 23 N 1.31610 * 120.00299 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99653 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46966 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47203 * 120.00148 * 24 22 20 27 27 H 1.48497 * 109.47154 * 240.00196 * 24 22 20 28 28 H 1.08991 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46744 * 299.99875 * 1 2 3 30 30 H 1.09000 * 109.46952 * 59.99584 * 1 2 3 31 31 H 1.08997 * 109.46961 * 240.00056 * 2 1 3 32 32 H 1.09001 * 109.47523 * 119.99666 * 2 1 3 33 33 H 1.09001 * 109.46967 * 64.99620 * 5 3 2 34 34 H 1.09003 * 109.47076 * 305.00768 * 5 3 2 35 35 H 0.96995 * 120.00072 * 0.02562 * 6 5 3 36 36 H 1.09001 * 109.47822 * 180.02562 * 11 9 7 37 37 H 1.09001 * 109.46962 * 300.00008 * 11 9 7 38 38 H 1.09002 * 109.47212 * 59.99903 * 11 9 7 39 39 H 1.08003 * 119.99321 * 359.97438 * 13 12 9 40 40 H 1.08002 * 120.00776 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.00661 * 179.71600 * 17 15 14 42 42 H 1.07997 * 119.99399 * 180.27944 * 18 17 15 43 43 H 0.96995 * 119.99859 * 95.00509 * 19 3 2 44 44 H 0.97002 * 120.00403 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5649 1.4444 -0.1257 6 7 4.0631 2.8168 -0.0059 7 6 5.3858 3.0630 -0.0868 8 8 6.1634 2.1484 -0.2592 9 6 5.8983 4.4747 0.0369 10 1 5.6137 4.8809 1.0076 11 6 5.2934 5.3361 -1.0734 12 6 7.4001 4.4767 -0.0882 13 6 8.1794 4.9510 0.9505 14 6 9.5568 4.9526 0.8365 15 6 10.1557 4.4798 -0.3177 16 17 11.8858 4.4809 -0.4613 17 6 9.3751 4.0112 -1.3593 18 6 7.9979 4.0048 -1.2419 19 7 1.6525 2.0975 1.2519 20 6 0.4157 2.6735 1.3689 21 1 -0.2741 2.6446 0.5384 22 6 0.0483 3.2936 2.5552 23 7 0.8889 3.3284 3.5673 24 14 -1.6391 4.0788 2.7151 25 1 -2.3888 3.9038 1.4451 26 1 -2.3845 3.4290 3.8229 27 1 -1.4858 5.5272 3.0044 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8499 1.0377 -1.0960 34 1 3.9954 0.8310 0.6659 35 1 3.4411 3.5483 0.1316 36 1 5.6644 6.3572 -0.9842 37 1 5.5779 4.9301 -2.0441 38 1 4.2071 5.3348 -0.9833 39 1 7.7117 5.3205 1.8512 40 1 10.1655 5.3229 1.6482 41 1 9.8418 3.6463 -2.2623 42 1 7.3886 3.6348 -2.0532 43 1 2.2721 2.1232 1.9977 44 1 0.6323 3.7620 4.3962 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753489111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:00 Heat of formation + Delta-G solvation = -26.716257 kcal Electronic energy + Delta-G solvation = -24848.080342 eV Core-core repulsion = 21211.684747 eV Total energy + Delta-G solvation = -3636.395595 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.27370 -38.81786 -36.85896 -36.51767 -34.12307 -33.63141 -32.38686 -31.18705 -29.87157 -29.37594 -27.78084 -24.88389 -23.73312 -22.97315 -22.68457 -21.47413 -20.15777 -19.48521 -17.51196 -17.21810 -16.77836 -16.04372 -15.57047 -15.29475 -14.95240 -14.60264 -14.12567 -13.91640 -13.83618 -13.61096 -13.42927 -13.26712 -13.06770 -12.81358 -12.62455 -12.39857 -12.11465 -11.91107 -11.57820 -11.46936 -11.30473 -11.17809 -11.01084 -10.94028 -10.90017 -10.76545 -10.46279 -10.22872 -10.03730 -9.59752 -9.51871 -9.09797 -9.00666 -8.67103 -8.64728 -7.08324 -5.86528 -3.15745 1.01563 1.21892 1.98848 2.90223 3.34892 3.36740 3.42288 3.44240 3.72227 4.46709 4.49787 4.61423 4.76630 4.95022 5.05159 5.20153 5.24741 5.33575 5.37922 5.40041 5.52579 5.57990 5.62996 5.72860 5.85221 5.88609 5.92781 5.93922 5.98989 6.09532 6.12318 6.15973 6.39084 6.46068 6.51275 6.54366 6.57723 6.68624 6.87108 6.99013 7.20591 7.62392 7.90380 8.30795 8.53508 9.42966 9.97824 10.33770 11.35341 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.002563 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.865973 B =10920.812919 C =11778.952114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.709 5.709 7 C 0.515 3.485 8 O -0.547 6.547 9 C -0.076 4.076 10 H 0.109 0.891 11 C -0.141 4.141 12 C -0.054 4.054 13 C -0.099 4.099 14 C -0.113 4.113 15 C -0.037 4.037 16 Cl -0.080 7.080 17 C -0.113 4.113 18 C -0.071 4.071 19 N -0.721 5.721 20 C -0.237 4.237 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.929 5.929 24 Si 0.902 3.098 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.032 0.968 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.286 3.740 -9.608 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.361 5.361 7 C 0.300 3.700 8 O -0.425 6.425 9 C -0.097 4.097 10 H 0.127 0.873 11 C -0.198 4.198 12 C -0.055 4.055 13 C -0.118 4.118 14 C -0.132 4.132 15 C -0.063 4.063 16 Cl -0.051 7.051 17 C -0.132 4.132 18 C -0.090 4.090 19 N -0.364 5.364 20 C -0.368 4.368 21 H 0.091 0.909 22 C -0.208 4.208 23 N -0.577 5.577 24 Si 0.733 3.267 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.797 3.153 -9.768 18.009 hybrid contribution -0.944 0.628 0.638 1.301 sum 13.853 3.781 -9.130 17.016 Atomic orbital electron populations 1.21769 0.95723 0.99649 1.03234 1.22071 0.96966 0.98432 1.00018 1.20564 0.89954 0.92786 0.91409 0.92864 1.21662 0.95580 0.82685 1.01017 1.45957 1.06999 1.10785 1.72334 1.20306 0.82588 0.90417 0.76688 1.90689 1.55991 1.46198 1.49583 1.20333 0.91993 0.94564 1.02833 0.87276 1.21799 1.01423 0.99464 0.97146 1.19475 0.94044 0.97785 0.94170 1.21033 0.92739 0.99464 0.98532 1.20963 0.94893 1.00666 0.96696 1.20906 0.84098 1.04396 0.96901 1.98357 1.11348 1.97349 1.98080 1.20989 0.93522 1.00422 0.98258 1.20880 0.93557 0.96759 0.97775 1.42467 1.16778 1.65838 1.11291 1.19246 0.91934 1.27595 0.97978 0.90857 1.24729 0.98030 1.01616 0.96377 1.69663 1.35120 1.48950 1.03970 0.86204 0.84149 0.78871 0.77476 1.20556 1.21944 1.21922 0.94874 0.89679 0.94119 0.93872 0.92540 0.91944 0.91901 0.75289 0.91278 0.91990 0.91043 0.84940 0.85048 0.85151 0.85323 0.78108 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.25 5.61 -26.73 -0.15 -2.40 16 3 C 0.16 2.89 2.59 -67.93 -0.18 2.71 16 4 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 5 C 0.12 1.87 5.23 -4.05 -0.02 1.85 16 6 N -0.71 -10.96 5.28 -60.30 -0.32 -11.28 16 7 C 0.51 7.87 7.02 -10.98 -0.08 7.79 16 8 O -0.55 -10.01 15.11 5.56 0.08 -9.92 16 9 C -0.08 -0.91 2.90 -92.93 -0.27 -1.18 16 10 H 0.11 1.23 7.88 -51.93 -0.41 0.83 16 11 C -0.14 -1.39 8.90 37.16 0.33 -1.05 16 12 C -0.05 -0.66 4.40 -104.62 -0.46 -1.12 16 13 C -0.10 -1.11 9.67 -39.59 -0.38 -1.49 16 14 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 15 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 16 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.32 16 17 C -0.11 -1.27 9.83 -39.55 -0.39 -1.66 16 18 C -0.07 -0.86 7.93 -39.59 -0.31 -1.17 16 19 N -0.72 -15.81 4.51 -53.42 -0.24 -16.05 16 20 C -0.24 -5.80 7.75 -15.06 -0.12 -5.92 16 21 H 0.07 1.77 7.32 -52.49 -0.38 1.38 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -26.05 13.06 55.49 0.72 -25.33 16 24 Si 0.90 20.97 29.55 -169.99 -5.02 15.95 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.75 5.99 -51.93 -0.31 1.44 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.41 6.37 7.55 -40.82 -0.31 6.06 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.59 7.38 -51.93 -0.38 0.21 16 38 H 0.07 0.70 7.56 -51.93 -0.39 0.31 16 39 H 0.13 1.24 7.95 -52.48 -0.42 0.83 16 40 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.13 1.50 7.51 -52.49 -0.39 1.10 16 43 H 0.38 9.30 7.80 -40.82 -0.32 8.98 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -28.68 376.91 -9.69 -38.37 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -6.68 Total: 13.41 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.42 Total: -8.51 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.17 Total: -52.65 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.68 -9.69 -38.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753489111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.654 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds