Wall clock time and date at job start Tue Mar 31 2020 14:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21280 * 119.99839 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00028 * 179.97438 * 7 6 5 10 10 H 1.08992 * 109.47087 * 299.99808 * 9 7 6 11 11 C 1.53006 * 109.47130 * 59.99699 * 9 7 6 12 12 C 1.50696 * 109.47012 * 179.97438 * 9 7 6 13 13 C 1.38242 * 119.98786 * 299.72336 * 12 9 7 14 14 C 1.38216 * 120.01237 * 179.72720 * 13 12 9 15 15 C 1.38349 * 119.98786 * 0.54877 * 14 13 12 16 16 Cl 1.73596 * 120.01721 * 179.70601 * 15 14 13 17 17 C 1.38356 * 119.97086 * 359.72923 * 15 14 13 18 18 C 1.38210 * 119.98894 * 359.97438 * 17 15 14 19 19 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 20 20 C 1.36943 * 119.99752 * 84.72207 * 19 3 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 3 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 3 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 29 29 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 30 30 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 32 32 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 33 33 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 34 34 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 35 35 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 36 36 H 1.08996 * 109.47260 * 180.02562 * 11 9 7 37 37 H 1.08996 * 109.46957 * 299.99966 * 11 9 7 38 38 H 1.09005 * 109.47154 * 59.99921 * 11 9 7 39 39 H 1.07997 * 119.99319 * 0.02562 * 13 12 9 40 40 H 1.07999 * 120.00844 * 180.27649 * 14 13 12 41 41 H 1.08008 * 120.00579 * 179.97438 * 17 15 14 42 42 H 1.07996 * 119.99814 * 180.02562 * 18 17 15 43 43 H 0.97001 * 120.00384 * 265.00562 * 19 3 2 44 44 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1634 2.1482 0.2574 9 6 5.8983 4.4746 -0.0378 10 1 5.6130 4.8810 -1.0081 11 6 5.2942 5.3358 1.0733 12 6 7.4001 4.4764 0.0862 13 6 7.9986 4.0087 1.2412 14 6 9.3762 4.0049 1.3533 15 6 10.1559 4.4797 0.3137 16 17 11.8859 4.4823 0.4567 17 6 9.5561 4.9530 -0.8397 18 6 8.1787 4.9507 -0.9531 19 7 1.6525 2.0975 -1.2518 20 6 0.4135 2.6685 -1.3707 21 1 -0.2763 2.6399 -0.5402 22 6 0.0441 3.2841 -2.5588 23 7 0.8846 3.3185 -3.5712 24 14 -1.6456 4.0637 -2.7208 25 1 -1.7977 5.1322 -1.7008 26 1 -1.7926 4.6494 -4.0775 27 1 -2.6902 3.0288 -2.5132 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.8498 1.0377 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4410 3.5482 -0.1315 36 1 5.6646 6.3569 0.9835 37 1 4.2079 5.3345 0.9840 38 1 5.5795 4.9294 2.0437 39 1 7.3898 3.6418 2.0543 40 1 9.8438 3.6353 2.2539 41 1 10.1642 5.3242 -1.6515 42 1 7.7104 5.3197 -1.8535 43 1 2.2719 2.1231 -1.9978 44 1 0.6267 3.7490 -4.4012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753489113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:03 Heat of formation + Delta-G solvation = -26.531539 kcal Electronic energy + Delta-G solvation = -24846.967692 eV Core-core repulsion = 21210.580107 eV Total energy + Delta-G solvation = -3636.387585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.27251 -38.81747 -36.85773 -36.51706 -34.12255 -33.63037 -32.38130 -31.18750 -29.86813 -29.37414 -27.77974 -24.88420 -23.72966 -22.97186 -22.68067 -21.47344 -20.15573 -19.48369 -17.51071 -17.21722 -16.77521 -16.04195 -15.57037 -15.29076 -14.95194 -14.60256 -14.13243 -13.91762 -13.83581 -13.61093 -13.42565 -13.26184 -13.06299 -12.80512 -12.62302 -12.39945 -12.11290 -11.91068 -11.58110 -11.46894 -11.30351 -11.17796 -10.99819 -10.91631 -10.89896 -10.76588 -10.47192 -10.24068 -10.07060 -9.58773 -9.51608 -9.09765 -8.99419 -8.67020 -8.64653 -7.08186 -5.85984 -3.15291 1.01607 1.21897 1.98904 2.90320 3.35491 3.37053 3.42079 3.43099 3.72285 4.46713 4.50137 4.61444 4.76645 4.95118 5.05177 5.20194 5.24704 5.33605 5.38099 5.40108 5.52959 5.58033 5.62977 5.72949 5.85222 5.88706 5.93082 5.94134 5.99024 6.09586 6.12433 6.16074 6.39409 6.46070 6.51479 6.54555 6.58000 6.68637 6.87218 6.99273 7.21288 7.61562 7.90506 8.31434 8.53620 9.43325 9.98175 10.34134 11.35776 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.002561 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.481625 B =10930.381059 C =11785.529959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.709 5.709 7 C 0.515 3.485 8 O -0.547 6.547 9 C -0.076 4.076 10 H 0.109 0.891 11 C -0.141 4.141 12 C -0.054 4.054 13 C -0.072 4.072 14 C -0.113 4.113 15 C -0.037 4.037 16 Cl -0.080 7.080 17 C -0.113 4.113 18 C -0.100 4.100 19 N -0.721 5.721 20 C -0.238 4.238 21 H 0.072 0.928 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.903 3.097 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.292 3.792 9.547 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.361 5.361 7 C 0.300 3.700 8 O -0.425 6.425 9 C -0.097 4.097 10 H 0.127 0.873 11 C -0.198 4.198 12 C -0.054 4.054 13 C -0.090 4.090 14 C -0.132 4.132 15 C -0.063 4.063 16 Cl -0.051 7.051 17 C -0.132 4.132 18 C -0.118 4.118 19 N -0.363 5.363 20 C -0.369 4.369 21 H 0.090 0.910 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.734 3.266 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.219 0.781 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.809 3.212 9.690 17.986 hybrid contribution -0.959 0.614 -0.617 1.295 sum 13.850 3.825 9.073 16.993 Atomic orbital electron populations 1.21773 0.95721 0.99654 1.03245 1.22071 0.96970 0.98446 1.00012 1.20562 0.89957 0.92766 0.91422 0.92873 1.21663 0.95573 0.82680 1.01015 1.45959 1.06991 1.10790 1.72329 1.20306 0.82590 0.90418 0.76690 1.90691 1.55990 1.46193 1.49597 1.20334 0.91993 0.94567 1.02829 0.87278 1.21799 1.01433 0.99461 0.97141 1.19473 0.94046 0.97786 0.94134 1.20881 0.93549 0.96817 0.97767 1.20987 0.93522 1.00350 0.98292 1.20905 0.84100 1.04369 0.96950 1.98357 1.11343 1.97351 1.98082 1.20962 0.94888 1.00677 0.96674 1.21029 0.92746 0.99465 0.98548 1.42454 1.16608 1.65981 1.11303 1.19154 0.91842 1.28032 0.97865 0.90972 1.24730 0.98015 1.01608 0.96348 1.69650 1.35215 1.49005 1.03891 0.86342 0.84302 0.79204 0.76758 1.21294 1.21789 1.21288 0.94124 0.89650 0.94886 0.92546 0.93881 0.91940 0.91900 0.75287 0.91279 0.91048 0.91981 0.85327 0.85151 0.85048 0.84941 0.78103 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.17 37.15 0.34 -2.21 16 2 C -0.13 -2.26 5.61 -26.74 -0.15 -2.41 16 3 C 0.16 2.89 2.59 -67.93 -0.18 2.72 16 4 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 5 C 0.12 1.87 5.23 -4.04 -0.02 1.85 16 6 N -0.71 -10.97 5.28 -60.29 -0.32 -11.29 16 7 C 0.51 7.87 7.03 -10.99 -0.08 7.79 16 8 O -0.55 -10.02 15.13 5.56 0.08 -9.93 16 9 C -0.08 -0.91 2.90 -92.92 -0.27 -1.18 16 10 H 0.11 1.23 7.88 -51.93 -0.41 0.82 16 11 C -0.14 -1.39 8.90 37.16 0.33 -1.06 16 12 C -0.05 -0.65 4.39 -104.62 -0.46 -1.11 16 13 C -0.07 -0.87 7.94 -39.59 -0.31 -1.18 16 14 C -0.11 -1.27 9.83 -39.55 -0.39 -1.66 16 15 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 16 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.32 16 17 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 18 C -0.10 -1.11 9.67 -39.59 -0.38 -1.49 16 19 N -0.72 -15.82 4.51 -53.43 -0.24 -16.06 16 20 C -0.24 -5.84 7.74 -15.06 -0.12 -5.96 16 21 H 0.07 1.73 7.31 -52.49 -0.38 1.35 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -26.09 13.06 55.49 0.72 -25.36 16 24 Si 0.90 20.98 29.55 -169.99 -5.02 15.96 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.77 5.97 -51.93 -0.31 1.46 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.41 6.37 7.56 -40.82 -0.31 6.07 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.70 7.56 -51.93 -0.39 0.31 16 38 H 0.06 0.59 7.37 -51.93 -0.38 0.21 16 39 H 0.13 1.50 7.51 -52.49 -0.39 1.10 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 42 H 0.13 1.24 7.95 -52.49 -0.42 0.83 16 43 H 0.38 9.31 7.80 -40.82 -0.32 8.99 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -28.64 376.88 -9.69 -38.34 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -6.68 Total: 13.53 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.42 Total: -8.54 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.17 Total: -52.71 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.64 -9.69 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753489113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.805 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds