Wall clock time and date at job start Tue Mar 31 2020 14:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21280 * 119.99839 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00028 * 179.97438 * 7 6 5 10 10 H 1.08992 * 109.47087 * 299.99808 * 9 7 6 11 11 C 1.53006 * 109.47130 * 59.99699 * 9 7 6 12 12 C 1.50696 * 109.47012 * 179.97438 * 9 7 6 13 13 C 1.38242 * 119.98786 * 299.72336 * 12 9 7 14 14 C 1.38216 * 120.01237 * 179.72720 * 13 12 9 15 15 C 1.38349 * 119.98786 * 0.54877 * 14 13 12 16 16 Cl 1.73596 * 120.01721 * 179.70601 * 15 14 13 17 17 C 1.38356 * 119.97086 * 359.72923 * 15 14 13 18 18 C 1.38210 * 119.98894 * 359.97438 * 17 15 14 19 19 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 20 20 C 1.36943 * 119.99752 * 84.72207 * 19 3 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 3 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 3 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 29 29 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 30 30 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 32 32 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 33 33 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 34 34 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 35 35 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 36 36 H 1.08996 * 109.47260 * 180.02562 * 11 9 7 37 37 H 1.08996 * 109.46957 * 299.99966 * 11 9 7 38 38 H 1.09005 * 109.47154 * 59.99921 * 11 9 7 39 39 H 1.07997 * 119.99319 * 0.02562 * 13 12 9 40 40 H 1.07999 * 120.00844 * 180.27649 * 14 13 12 41 41 H 1.08008 * 120.00579 * 179.97438 * 17 15 14 42 42 H 1.07996 * 119.99814 * 180.02562 * 18 17 15 43 43 H 0.97001 * 120.00384 * 265.00562 * 19 3 2 44 44 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1634 2.1482 0.2574 9 6 5.8983 4.4746 -0.0378 10 1 5.6130 4.8810 -1.0081 11 6 5.2942 5.3358 1.0733 12 6 7.4001 4.4764 0.0862 13 6 7.9986 4.0087 1.2412 14 6 9.3762 4.0049 1.3533 15 6 10.1559 4.4797 0.3137 16 17 11.8859 4.4823 0.4567 17 6 9.5561 4.9530 -0.8397 18 6 8.1787 4.9507 -0.9531 19 7 1.6525 2.0975 -1.2518 20 6 0.4135 2.6685 -1.3707 21 1 -0.2763 2.6399 -0.5402 22 6 0.0441 3.2841 -2.5588 23 7 0.8846 3.3185 -3.5712 24 14 -1.6456 4.0637 -2.7208 25 1 -1.7977 5.1322 -1.7008 26 1 -1.7926 4.6494 -4.0775 27 1 -2.6902 3.0288 -2.5132 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.8498 1.0377 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4410 3.5482 -0.1315 36 1 5.6646 6.3569 0.9835 37 1 4.2079 5.3345 0.9840 38 1 5.5795 4.9294 2.0437 39 1 7.3898 3.6418 2.0543 40 1 9.8438 3.6353 2.2539 41 1 10.1642 5.3242 -1.6515 42 1 7.7104 5.3197 -1.8535 43 1 2.2719 2.1231 -1.9978 44 1 0.6267 3.7490 -4.4012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753489113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:02 Heat of formation + Delta-G solvation = -41.936291 kcal Electronic energy + Delta-G solvation = -24847.635692 eV Core-core repulsion = 21210.580107 eV Total energy + Delta-G solvation = -3637.055585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33591 -39.86656 -38.25846 -37.45471 -35.28833 -34.92432 -34.03859 -32.03282 -31.48916 -30.40873 -29.16607 -26.02544 -25.29938 -24.10110 -23.77361 -22.53375 -21.58256 -20.69619 -19.19999 -18.22577 -17.95058 -17.16019 -16.89871 -16.57160 -16.08285 -15.87468 -15.59325 -15.24059 -14.86981 -14.74199 -14.55703 -14.42866 -14.31552 -14.08850 -13.88667 -13.47692 -13.23599 -12.95370 -12.80817 -12.73717 -12.71395 -12.44932 -12.35475 -12.18775 -12.11438 -12.03019 -11.85253 -11.73674 -11.60096 -11.31411 -10.90748 -10.69917 -9.98324 -9.93205 -9.54650 -8.94893 -7.85174 -5.11918 0.13636 0.36437 1.14804 1.52527 1.53841 1.58816 1.69833 2.27636 2.61869 2.74430 3.48508 3.54984 3.73089 3.90535 3.96234 3.97093 4.00939 4.18308 4.28229 4.40639 4.41602 4.50167 4.51368 4.58527 4.70950 4.78825 4.84590 4.89678 4.92223 5.01765 5.12023 5.15048 5.19977 5.22575 5.25604 5.29663 5.51242 5.58319 5.61046 5.64253 5.73339 5.83342 6.35086 6.65576 7.30368 7.43241 8.14976 8.39990 9.37497 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.002561 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.481625 B =10930.381059 C =11785.529959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.165 3.835 4 H 0.060 0.940 5 C 0.124 3.876 6 N -0.709 5.709 7 C 0.514 3.486 8 O -0.578 6.578 9 C -0.069 4.069 10 H 0.116 0.884 11 C -0.136 4.136 12 C -0.067 4.067 13 C -0.083 4.083 14 C -0.119 4.119 15 C -0.046 4.046 16 Cl -0.073 7.073 17 C -0.116 4.116 18 C -0.106 4.106 19 N -0.727 5.727 20 C -0.215 4.215 21 H 0.080 0.920 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.957 3.043 25 H -0.277 1.277 26 H -0.305 1.305 27 H -0.285 1.285 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.411 0.589 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.128 0.872 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.372 0.628 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.425 4.068 10.967 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.078 0.922 5 C -0.001 4.001 6 N -0.359 5.359 7 C 0.301 3.699 8 O -0.459 6.459 9 C -0.091 4.091 10 H 0.134 0.866 11 C -0.193 4.193 12 C -0.068 4.068 13 C -0.101 4.101 14 C -0.137 4.137 15 C -0.072 4.072 16 Cl -0.044 7.044 17 C -0.134 4.134 18 C -0.124 4.124 19 N -0.367 5.367 20 C -0.347 4.347 21 H 0.098 0.902 22 C -0.264 4.264 23 N -0.619 5.619 24 Si 0.788 3.212 25 H -0.204 1.204 26 H -0.232 1.232 27 H -0.212 1.212 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.248 0.752 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.204 0.796 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.928 3.479 11.167 18.965 hybrid contribution -0.937 0.442 -0.970 1.419 sum 13.992 3.921 10.196 17.751 Atomic orbital electron populations 1.21701 0.95976 1.00533 1.01842 1.22000 0.96632 0.97592 1.00910 1.20701 0.90970 0.93089 0.89566 0.92168 1.21523 0.94269 0.83124 1.01192 1.45960 1.07295 1.10421 1.72270 1.20865 0.82026 0.91514 0.75522 1.90671 1.56598 1.47550 1.51049 1.20327 0.92158 0.92574 1.03993 0.86595 1.21791 1.01280 0.99882 0.96371 1.19588 0.94105 0.98487 0.94614 1.20962 0.93986 0.97244 0.97925 1.21170 0.93388 1.00228 0.98936 1.21062 0.84600 1.04403 0.97176 1.98357 1.10665 1.97320 1.98075 1.21213 0.95007 1.00185 0.97029 1.21265 0.93023 0.99300 0.98849 1.42566 1.15607 1.66189 1.12346 1.19445 0.92381 1.25511 0.97342 0.90248 1.25341 1.00796 1.03591 0.96654 1.69794 1.36759 1.51127 1.04180 0.85451 0.81206 0.78521 0.76006 1.20359 1.23171 1.21154 0.93070 0.93277 0.93025 0.93815 0.90770 0.90378 0.93533 0.75227 0.89660 0.91032 0.91763 0.85446 0.83863 0.83286 0.83415 0.79575 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.17 71.98 0.66 -4.04 16 2 C -0.13 -4.14 5.61 30.59 0.17 -3.97 16 3 C 0.17 5.62 2.59 44.99 0.12 5.74 16 4 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 5 C 0.12 3.89 5.23 86.38 0.45 4.34 16 6 N -0.71 -21.38 5.28 -463.06 -2.45 -23.82 16 7 C 0.51 15.39 7.03 87.66 0.62 16.01 16 8 O -0.58 -21.01 15.13 -3.03 -0.05 -21.05 16 9 C -0.07 -1.59 2.90 -12.29 -0.04 -1.63 16 10 H 0.12 2.50 7.88 -2.39 -0.02 2.48 16 11 C -0.14 -2.47 8.90 71.98 0.64 -1.83 16 12 C -0.07 -1.57 4.39 -19.86 -0.09 -1.66 16 13 C -0.08 -1.94 7.94 22.27 0.18 -1.76 16 14 C -0.12 -2.56 9.83 22.29 0.22 -2.35 16 15 C -0.05 -0.98 6.32 22.32 0.14 -0.84 16 16 Cl -0.07 -1.40 28.96 -2.72 -0.08 -1.48 16 17 C -0.12 -2.33 9.83 22.29 0.22 -2.11 16 18 C -0.11 -2.24 9.67 22.26 0.22 -2.02 16 19 N -0.73 -31.60 4.51 -322.94 -1.46 -33.06 16 20 C -0.21 -10.42 7.74 84.03 0.65 -9.77 16 21 H 0.08 3.70 7.31 -2.91 -0.02 3.68 16 22 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 23 N -0.97 -55.22 13.06 21.65 0.28 -54.93 16 24 Si 0.96 43.27 29.55 68.60 2.03 45.29 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 28 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.05 1.97 5.97 -2.39 -0.01 1.96 16 30 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.41 12.44 7.56 -92.71 -0.70 11.74 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.30 7.56 -2.39 -0.02 1.28 16 38 H 0.06 1.14 7.37 -2.38 -0.02 1.12 16 39 H 0.13 2.91 7.51 -2.91 -0.02 2.89 16 40 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.15 2.55 7.95 -2.91 -0.02 2.53 16 43 H 0.37 18.17 7.80 -92.71 -0.72 17.45 16 44 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -60.86 376.88 2.50 -58.36 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -0.41 Total: 39.88 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 4.62 Total: -9.19 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -3.62 Total: -111.81 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.05 Total: -21.05 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -60.86 2.50 -58.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753489113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.426 kcal (2) G-P(sol) polarization free energy of solvation -60.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds