Wall clock time and date at job start Tue Mar 31 2020 14:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99538 * 179.97438 * 7 6 5 10 10 H 1.08998 * 109.47231 * 60.00064 * 9 7 6 11 11 C 1.52996 * 109.47310 * 299.99476 * 9 7 6 12 12 C 1.50705 * 109.46836 * 179.97438 * 9 7 6 13 13 C 1.38247 * 119.98484 * 59.73313 * 12 9 7 14 14 C 1.38210 * 120.01148 * 179.72825 * 13 12 9 15 15 C 1.38357 * 119.98949 * 0.53789 * 14 13 12 16 16 Cl 1.73591 * 120.01660 * 179.70808 * 15 14 13 17 17 C 1.38346 * 119.96893 * 359.73182 * 15 14 13 18 18 C 1.38215 * 119.98959 * 359.97438 * 17 15 14 19 19 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 29 29 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 30 30 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 32 32 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 33 33 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 34 34 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 35 35 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 36 36 H 1.09008 * 109.47269 * 180.02562 * 11 9 7 37 37 H 1.08998 * 109.47453 * 300.00451 * 11 9 7 38 38 H 1.08998 * 109.47011 * 60.00399 * 11 9 7 39 39 H 1.08001 * 119.98961 * 359.97438 * 13 12 9 40 40 H 1.08000 * 120.00601 * 180.26639 * 14 13 12 41 41 H 1.08005 * 120.01000 * 179.97438 * 17 15 14 42 42 H 1.08009 * 119.99453 * 180.02562 * 18 17 15 43 43 H 0.97000 * 119.99792 * 264.99726 * 19 3 2 44 44 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1636 2.1483 0.2571 9 6 5.8983 4.4747 -0.0379 10 1 5.4680 5.0881 0.7537 11 6 5.4978 5.0452 -1.3999 12 6 7.4002 4.4765 0.0860 13 6 8.1683 3.7575 -0.8108 14 6 9.5460 3.7633 -0.7011 15 6 10.1560 4.4799 0.3131 16 17 11.8860 4.4815 0.4561 17 6 9.3865 5.1947 1.2136 18 6 8.0091 5.1930 1.0993 19 7 1.6524 2.0975 -1.2518 20 6 0.4157 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5381 22 6 0.0506 3.2991 -2.5530 23 7 0.8912 3.3339 -3.5651 24 14 -1.6337 4.0915 -2.7099 25 1 -2.3839 3.9152 -1.4404 26 1 -1.4746 5.5403 -2.9943 27 1 -2.3819 3.4484 -3.8198 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.8500 1.0377 1.0960 34 1 3.9955 0.8311 -0.6660 35 1 3.4411 3.5483 -0.1315 36 1 5.8688 6.0662 -1.4895 37 1 5.9280 4.4318 -2.1915 38 1 4.4114 5.0439 -1.4891 39 1 7.6918 3.1944 -1.5997 40 1 10.1462 3.2051 -1.4044 41 1 9.8620 5.7539 2.0059 42 1 7.4083 5.7514 1.8020 43 1 2.2720 2.1232 -1.9978 44 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753489114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:06 Heat of formation + Delta-G solvation = -26.715465 kcal Electronic energy + Delta-G solvation = -24906.557986 eV Core-core repulsion = 21270.162425 eV Total energy + Delta-G solvation = -3636.395561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.26531 -38.81509 -36.85638 -36.51602 -34.08977 -33.62805 -32.38754 -31.18235 -29.86565 -29.35050 -27.76190 -24.81888 -23.73329 -22.96583 -22.68184 -21.46768 -20.16505 -19.46297 -17.51640 -17.24175 -16.72146 -16.04452 -15.59158 -15.27781 -14.92740 -14.58764 -14.08495 -13.88950 -13.85325 -13.61410 -13.45583 -13.20677 -13.02329 -12.87792 -12.52543 -12.29186 -12.11298 -11.87381 -11.55794 -11.49453 -11.27270 -11.12576 -11.00549 -10.94132 -10.89801 -10.76153 -10.46248 -10.22933 -10.03814 -9.59735 -9.51046 -9.09169 -9.00863 -8.66472 -8.64660 -7.08381 -5.86750 -3.15753 1.02124 1.22391 1.99231 2.89890 3.34917 3.37094 3.42353 3.44174 3.73427 4.48926 4.49815 4.61867 4.76846 4.97547 5.11817 5.17933 5.26813 5.36775 5.37896 5.40370 5.52473 5.59202 5.74967 5.83583 5.87000 5.88524 5.92886 5.93909 6.08393 6.11718 6.13266 6.26232 6.39214 6.47434 6.51369 6.54344 6.57635 6.69458 6.87028 6.98895 7.20567 7.62415 7.90359 8.30579 8.53504 9.42903 9.97564 10.33763 11.35028 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002576 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.963427 B =10868.853083 C =11738.242741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.709 5.709 7 C 0.514 3.486 8 O -0.547 6.547 9 C -0.074 4.074 10 H 0.104 0.896 11 C -0.143 4.143 12 C -0.054 4.054 13 C -0.069 4.069 14 C -0.112 4.112 15 C -0.037 4.037 16 Cl -0.080 7.080 17 C -0.115 4.115 18 C -0.102 4.102 19 N -0.721 5.721 20 C -0.236 4.236 21 H 0.073 0.927 22 C -0.011 4.011 23 N -0.928 5.928 24 Si 0.901 3.099 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.410 0.590 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.338 3.525 8.419 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.361 5.361 7 C 0.299 3.701 8 O -0.425 6.425 9 C -0.095 4.095 10 H 0.122 0.878 11 C -0.200 4.200 12 C -0.055 4.055 13 C -0.088 4.088 14 C -0.131 4.131 15 C -0.063 4.063 16 Cl -0.051 7.051 17 C -0.133 4.133 18 C -0.120 4.120 19 N -0.363 5.363 20 C -0.367 4.367 21 H 0.091 0.909 22 C -0.207 4.207 23 N -0.577 5.577 24 Si 0.733 3.267 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.247 0.753 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.850 2.939 8.576 17.399 hybrid contribution -0.955 0.667 -0.469 1.255 sum 13.895 3.605 8.108 16.487 Atomic orbital electron populations 1.21769 0.95721 0.99643 1.03237 1.22068 0.96967 0.98424 1.00014 1.20566 0.89954 0.92793 0.91420 0.92877 1.21666 0.95578 0.82679 1.01020 1.45960 1.07002 1.10794 1.72326 1.20329 0.82609 0.90483 0.76632 1.90689 1.56006 1.46222 1.49574 1.20328 0.92293 0.95374 1.01493 0.87794 1.21819 1.03171 1.01169 0.93869 1.19492 0.94126 0.96695 0.95169 1.20935 0.92394 0.96690 0.98755 1.21015 0.94935 0.99360 0.97764 1.20903 0.84120 1.02258 0.99041 1.98356 1.11349 1.97744 1.97694 1.20933 0.93533 0.99895 0.98982 1.20976 0.93834 0.99454 0.97730 1.42456 1.16756 1.65852 1.11268 1.19243 0.91986 1.27433 0.98078 0.90884 1.24723 0.98016 1.01560 0.96423 1.69665 1.35119 1.48837 1.04034 0.86210 0.84148 0.78913 0.77460 1.20580 1.21929 1.21957 0.94132 0.89662 0.94881 0.92540 0.93879 0.91964 0.91885 0.75291 0.91477 0.91763 0.90397 0.85127 0.85085 0.85130 0.85147 0.78099 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.16 2.88 2.59 -67.93 -0.18 2.70 16 4 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 5 C 0.12 1.86 5.23 -4.04 -0.02 1.84 16 6 N -0.71 -10.93 5.28 -60.29 -0.32 -11.25 16 7 C 0.51 7.85 7.02 -10.99 -0.08 7.77 16 8 O -0.55 -9.99 15.09 5.56 0.08 -9.91 16 9 C -0.07 -0.88 2.90 -92.92 -0.27 -1.15 16 10 H 0.10 1.04 7.87 -51.93 -0.41 0.63 16 11 C -0.14 -1.67 8.91 37.16 0.33 -1.34 16 12 C -0.05 -0.66 4.40 -104.62 -0.46 -1.12 16 13 C -0.07 -0.88 7.92 -39.59 -0.31 -1.19 16 14 C -0.11 -1.31 9.83 -39.55 -0.39 -1.70 16 15 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 16 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.33 16 17 C -0.11 -1.20 9.83 -39.55 -0.39 -1.59 16 18 C -0.10 -1.08 9.67 -39.59 -0.38 -1.46 16 19 N -0.72 -15.65 4.51 -53.42 -0.24 -15.89 16 20 C -0.24 -5.76 7.75 -15.06 -0.12 -5.88 16 21 H 0.07 1.76 7.32 -52.49 -0.38 1.37 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -25.75 13.06 55.49 0.72 -25.03 16 24 Si 0.90 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.75 5.99 -51.93 -0.31 1.44 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.41 6.35 7.56 -40.82 -0.31 6.04 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.06 0.79 7.41 -51.93 -0.38 0.41 16 38 H 0.08 1.00 7.56 -51.93 -0.39 0.61 16 39 H 0.13 1.70 7.52 -52.49 -0.39 1.30 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.13 1.08 7.95 -52.48 -0.42 0.66 16 43 H 0.38 9.17 7.80 -40.82 -0.32 8.85 16 44 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -28.27 376.90 -9.69 -37.97 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.68 Total: 13.64 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.42 Total: -8.75 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.17 Total: -52.16 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.27 -9.69 -37.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753489114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.251 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds