Wall clock time and date at job start Tue Mar 31 2020 14:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 N 1.46493 * 109.47080 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00271 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99957 * 0.02562 * 5 4 3 7 7 C 1.38812 * 120.00637 * 180.02562 * 5 4 3 8 8 N 1.31623 * 119.99454 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00307 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47233 * 59.99866 * 9 7 5 11 11 H 1.48501 * 109.47118 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46803 * 299.99875 * 9 7 5 13 13 N 1.46498 * 109.46779 * 119.99824 * 2 1 3 14 14 C 1.34780 * 120.00277 * 303.97305 * 13 2 1 15 15 O 1.21566 * 119.99777 * 355.33527 * 14 13 2 16 16 C 1.47696 * 119.99843 * 175.05788 * 14 13 2 17 17 C 1.39652 * 120.15781 * 359.72757 * 16 14 13 18 18 C 1.38071 * 119.85157 * 179.74444 * 17 16 14 19 19 F 1.35102 * 119.91689 * 180.25843 * 18 17 16 20 20 C 1.38654 * 120.16628 * 0.50937 * 18 17 16 21 21 C 1.38188 * 120.31297 * 359.76662 * 20 18 17 22 22 C 1.38316 * 120.14752 * 359.97438 * 21 20 18 23 23 F 1.35096 * 120.08247 * 179.97438 * 22 21 20 24 24 C 1.52999 * 109.47214 * 239.99892 * 2 1 3 25 25 C 1.52998 * 117.50141 * 12.53619 * 24 2 1 26 26 C 1.52998 * 117.49858 * 303.87856 * 24 2 1 27 27 H 1.08992 * 109.47340 * 300.00073 * 1 2 3 28 28 H 1.09003 * 109.47120 * 60.00345 * 1 2 3 29 29 H 1.09001 * 109.46983 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47416 * 299.99843 * 3 2 1 31 31 H 1.09000 * 109.46931 * 59.99509 * 3 2 1 32 32 H 0.96998 * 120.00288 * 0.02562 * 4 3 2 33 33 H 0.96998 * 119.99931 * 179.97438 * 8 7 5 34 34 H 0.97005 * 119.99547 * 123.97772 * 13 2 1 35 35 H 1.08001 * 120.07152 * 359.97438 * 17 16 14 36 36 H 1.08003 * 119.84509 * 179.74807 * 20 18 17 37 37 H 1.08003 * 119.92512 * 179.97438 * 21 20 18 38 38 H 1.08996 * 115.54679 * 158.20610 * 24 2 1 39 39 H 1.09005 * 117.49423 * 0.02562 * 25 24 2 40 40 H 1.08997 * 117.50063 * 145.02063 * 25 24 2 41 41 H 1.09007 * 117.49648 * 214.97941 * 26 24 2 42 42 H 1.08998 * 117.49865 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1897 2.6284 0.0002 6 1 3.6497 3.5638 -0.0002 7 6 5.5778 2.6285 0.0002 8 7 6.2359 1.4886 0.0012 9 14 6.5118 4.2462 0.0004 10 1 6.1530 5.0249 1.2129 11 1 7.9718 3.9749 -0.0002 12 1 6.1530 5.0250 -1.2121 13 7 2.0183 -0.6906 1.1962 14 6 1.6280 -0.2787 2.4187 15 8 0.9396 0.7167 2.5336 16 6 2.0315 -1.0401 3.6182 17 6 2.8126 -2.1905 3.4891 18 6 3.1907 -2.8945 4.6150 19 9 3.9507 -4.0046 4.4920 20 6 2.7879 -2.4679 5.8713 21 6 2.0100 -1.3338 6.0067 22 6 1.6284 -0.6157 4.8879 23 9 0.8675 0.4926 5.0216 24 6 2.0401 -0.7213 -1.2492 25 6 1.0266 -1.0200 -2.3558 26 6 1.5623 -2.1561 -1.4810 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.9900 0.6025 0.0006 33 1 7.2059 1.4886 0.0009 34 1 2.6226 -1.4443 1.1083 35 1 3.1234 -2.5266 2.5109 36 1 3.0832 -3.0249 6.7483 37 1 1.6995 -1.0074 6.9882 38 1 3.0576 -0.4745 -1.5520 39 1 -0.0035 -0.7023 -2.1939 40 1 1.3775 -0.9702 -3.3865 41 1 2.2656 -2.8533 -1.9367 42 1 0.8850 -2.5864 -0.7434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753521174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:04 Heat of formation + Delta-G solvation = -50.917202 kcal Electronic energy + Delta-G solvation = -28148.102051 eV Core-core repulsion = 23958.860344 eV Total energy + Delta-G solvation = -4189.241707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.10561 -48.86845 -40.35247 -38.79940 -37.48326 -34.67257 -33.59522 -32.19662 -30.77170 -30.15874 -29.47179 -25.91881 -24.69565 -23.60491 -22.76185 -22.33758 -22.06330 -20.56082 -18.94543 -18.32547 -17.51125 -17.23652 -17.10399 -16.52761 -16.04100 -15.56348 -15.42493 -15.18380 -14.77113 -14.52244 -14.47895 -14.34810 -14.06516 -13.65215 -13.23929 -13.19233 -12.72325 -12.67210 -12.36072 -12.10764 -12.07556 -11.89070 -11.61119 -11.38642 -11.06858 -10.85576 -10.77766 -10.73514 -10.20893 -10.10177 -9.85105 -9.64866 -9.52583 -9.44795 -8.79253 -8.75834 -8.61530 -6.82369 -5.71639 -2.97693 0.42497 0.75448 2.72688 3.16052 3.48117 3.51835 3.53576 3.58660 3.88645 3.96697 4.06719 4.30037 4.47341 4.64464 4.74726 4.81037 4.88187 5.07477 5.17018 5.28719 5.36713 5.44949 5.55377 5.62543 5.64420 5.67052 5.74731 5.79173 5.82618 5.96483 6.03823 6.20450 6.24320 6.27404 6.44071 6.48046 6.53939 6.68092 6.89815 7.09909 7.76023 7.79372 8.46507 8.48063 9.59403 10.17065 10.52933 11.51564 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.009036 B = 0.004832 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.014367 B = 5793.850899 C = 6971.152036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.203 3.797 3 C 0.143 3.857 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.016 4.016 8 N -0.937 5.937 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.700 5.700 14 C 0.563 3.437 15 O -0.513 6.513 16 C -0.134 4.134 17 C -0.091 4.091 18 C 0.082 3.918 19 F -0.133 7.133 20 C -0.104 4.104 21 C -0.137 4.137 22 C 0.150 3.850 23 F -0.109 7.109 24 C -0.151 4.151 25 C -0.171 4.171 26 C -0.184 4.184 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.025 0.975 31 H 0.046 0.954 32 H 0.381 0.619 33 H 0.253 0.747 34 H 0.397 0.603 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.869 -13.239 7.015 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.118 3.882 3 C 0.015 3.985 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.587 5.587 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.351 5.351 14 C 0.349 3.651 15 O -0.389 6.389 16 C -0.138 4.138 17 C -0.110 4.110 18 C 0.062 3.938 19 F -0.111 7.111 20 C -0.123 4.123 21 C -0.156 4.156 22 C 0.129 3.871 23 F -0.087 7.087 24 C -0.170 4.170 25 C -0.208 4.208 26 C -0.221 4.221 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.215 0.785 33 H 0.063 0.937 34 H 0.232 0.768 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.141 0.859 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.348 -12.329 7.066 18.185 hybrid contribution 1.330 0.218 -0.064 1.349 sum -10.017 -12.112 7.003 17.207 Atomic orbital electron populations 1.22291 0.94523 1.01712 1.03780 1.20073 0.93194 0.93212 0.81753 1.21078 0.86498 0.91548 0.99344 1.42216 0.99152 1.06159 1.89467 1.19196 0.89008 0.86204 1.41752 0.91391 1.24671 0.96288 0.96697 1.03448 1.69633 1.06687 1.23835 1.58505 0.86284 0.78894 0.83318 0.77837 1.21398 1.21791 1.21358 1.45807 1.49283 1.35091 1.04963 1.17651 0.80695 0.84146 0.82625 1.90787 1.37998 1.24221 1.85930 1.20065 1.02441 0.97437 0.93841 1.21225 0.96716 0.93835 0.99255 1.17457 0.96047 0.86236 0.94045 1.91540 1.73234 1.49594 1.96766 1.21127 0.97675 0.96813 0.96708 1.20986 1.00341 0.95690 0.98585 1.17688 0.92204 0.84607 0.92626 1.91621 1.71851 1.48898 1.96327 1.22575 1.00895 0.96967 0.96548 1.23057 0.99232 1.02655 0.95876 1.22963 1.04036 0.91538 1.03540 0.90109 0.91371 0.92893 0.95717 0.93647 0.78489 0.93677 0.76784 0.83299 0.83370 0.83088 0.85871 0.88218 0.88831 0.88873 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 6.98 37.16 0.26 -2.13 16 2 C 0.20 3.33 0.54 -131.82 -0.07 3.26 16 3 C 0.14 3.07 5.02 -4.05 -0.02 3.05 16 4 N -0.73 -18.40 5.03 -59.91 -0.30 -18.70 16 5 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 6 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 7 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 8 N -0.94 -28.22 13.06 55.49 0.72 -27.50 16 9 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.70 -11.02 4.67 -48.59 -0.23 -11.25 16 14 C 0.56 9.73 7.18 -12.40 -0.09 9.64 16 15 O -0.51 -10.45 11.57 5.31 0.06 -10.38 16 16 C -0.13 -1.94 5.88 -104.92 -0.62 -2.55 16 17 C -0.09 -1.09 9.51 -39.12 -0.37 -1.46 16 18 C 0.08 0.89 7.29 -39.49 -0.29 0.61 16 19 F -0.13 -1.50 17.26 2.25 0.04 -1.46 16 20 C -0.10 -0.95 10.01 -39.45 -0.39 -1.35 16 21 C -0.14 -1.37 10.01 -39.57 -0.40 -1.77 16 22 C 0.15 2.06 7.28 -38.97 -0.28 1.78 16 23 F -0.11 -1.76 15.55 2.25 0.04 -1.72 16 24 C -0.15 -2.25 4.84 -90.62 -0.44 -2.69 16 25 C -0.17 -2.09 9.63 -26.70 -0.26 -2.35 16 26 C -0.18 -2.13 9.81 -26.70 -0.26 -2.39 16 27 H 0.08 1.33 6.04 -51.93 -0.31 1.02 16 28 H 0.07 0.91 6.79 -51.93 -0.35 0.55 16 29 H 0.05 0.67 6.99 -51.93 -0.36 0.30 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 1.09 6.30 -51.93 -0.33 0.76 16 32 H 0.38 9.85 6.63 -40.82 -0.27 9.58 16 33 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.40 5.45 6.52 -40.82 -0.27 5.18 16 35 H 0.15 1.56 6.42 -52.49 -0.34 1.22 16 36 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.12 2.21 7.09 -51.93 -0.37 1.84 16 39 H 0.10 1.13 5.88 -51.93 -0.31 0.83 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 0.98 7.36 -51.93 -0.38 0.60 16 LS Contribution 350.19 15.07 5.28 5.28 Total: -1.00 -33.19 350.19 -7.84 -41.03 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -4.94 Total: 12.38 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -3.48 Total: -5.66 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.20 Total: -57.44 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.06 Total: -10.38 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.07 Total: -3.18 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.19 -7.84 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753521174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.886 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds