Wall clock time and date at job start Tue Mar 31 2020 14:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47144 * 2 1 4 4 N 1.46497 * 109.46671 * 299.99782 * 3 2 1 5 5 C 1.36942 * 119.99523 * 179.72512 * 4 3 2 6 6 H 1.08000 * 120.00071 * 0.27285 * 5 4 3 7 7 C 1.38812 * 120.00196 * 180.27551 * 5 4 3 8 8 N 1.31629 * 119.99604 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00366 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47323 * 89.99813 * 9 7 5 11 11 H 1.48500 * 109.46974 * 210.00256 * 9 7 5 12 12 H 1.48503 * 109.46747 * 329.99790 * 9 7 5 13 13 N 1.46496 * 109.47178 * 239.99666 * 2 1 3 14 14 C 1.34779 * 119.99768 * 174.51593 * 13 2 1 15 15 O 1.21563 * 120.00132 * 5.22212 * 14 13 2 16 16 C 1.47702 * 120.00007 * 185.21784 * 14 13 2 17 17 C 1.39658 * 120.15260 * 359.72646 * 16 14 13 18 18 C 1.38071 * 119.85024 * 179.74535 * 17 16 14 19 19 F 1.35096 * 119.91644 * 180.27405 * 18 17 16 20 20 C 1.38653 * 120.16415 * 0.52913 * 18 17 16 21 21 C 1.38183 * 120.31620 * 359.72757 * 20 18 17 22 22 C 1.38319 * 120.14545 * 0.02562 * 21 20 18 23 23 F 1.35095 * 120.08238 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.47069 * 119.99750 * 2 1 3 25 25 C 1.53000 * 117.50127 * 122.31863 * 24 2 1 26 26 C 1.53006 * 117.49724 * 53.65865 * 24 2 1 27 27 H 1.09005 * 109.46920 * 59.99864 * 1 2 3 28 28 H 1.08998 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47089 * 300.00505 * 1 2 3 30 30 H 1.08993 * 109.46876 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46831 * 59.99614 * 3 2 1 32 32 H 0.96994 * 120.00324 * 359.97438 * 4 3 2 33 33 H 0.97000 * 119.99341 * 179.97438 * 8 7 5 34 34 H 0.96997 * 119.99965 * 354.52326 * 13 2 1 35 35 H 1.08002 * 120.07114 * 359.97407 * 17 16 14 36 36 H 1.07998 * 119.83861 * 179.69860 * 20 18 17 37 37 H 1.08001 * 119.92746 * 180.02562 * 21 20 18 38 38 H 1.09003 * 115.55135 * 267.99289 * 24 2 1 39 39 H 1.09000 * 117.49313 * 0.02562 * 25 24 2 40 40 H 1.08996 * 117.49682 * 145.01966 * 25 24 2 41 41 H 1.08998 * 117.49960 * 214.98389 * 26 24 2 42 42 H 1.09003 * 117.49792 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5517 2.1330 -1.1962 5 6 1.8779 3.4457 -1.4101 6 1 2.4988 3.9706 -0.6991 7 6 1.4106 4.1018 -2.5406 8 7 0.6542 3.4619 -3.4073 9 14 1.8561 5.8922 -2.8327 10 1 3.1166 5.9675 -3.6140 11 1 0.7644 6.5568 -3.5889 12 1 2.0412 6.5755 -1.5273 13 7 2.0184 -0.6907 -1.1961 14 6 3.3384 -0.7181 -1.4666 15 8 4.1317 -0.2531 -0.6714 16 6 3.8213 -1.3131 -2.7293 17 6 2.9133 -1.8535 -3.6425 18 6 3.3711 -2.4034 -4.8233 19 9 2.4935 -2.9215 -5.7102 20 6 4.7298 -2.4301 -5.0988 21 6 5.6346 -1.9023 -4.1976 22 6 5.1899 -1.3435 -3.0131 23 9 6.0757 -0.8283 -2.1328 24 6 2.0400 -0.7212 1.2493 25 6 2.9596 -1.9266 1.0433 26 6 1.5172 -2.1350 1.5117 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 0.8900 32 1 0.9944 1.6615 -1.8349 33 1 0.3274 3.9205 -4.1970 34 1 1.3917 -1.1281 -1.7934 35 1 1.8551 -1.8378 -3.4272 36 1 5.0825 -2.8660 -6.0218 37 1 6.6915 -1.9260 -4.4188 38 1 2.2292 -0.0859 2.1146 39 1 3.2015 -2.2055 0.0178 40 1 3.7535 -2.0844 1.7733 41 1 1.3628 -2.4300 2.5496 42 1 0.8103 -2.5515 0.7941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753521175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:06 Heat of formation + Delta-G solvation = -43.601064 kcal Electronic energy + Delta-G solvation = -28524.437032 eV Core-core repulsion = 24335.512577 eV Total energy + Delta-G solvation = -4188.924455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.06567 -48.81912 -40.55189 -38.70831 -36.94575 -34.97606 -33.50906 -32.15589 -30.81643 -30.09896 -29.44140 -26.05235 -24.59252 -23.70882 -22.89120 -22.08342 -21.38459 -20.91494 -19.06024 -18.37142 -17.46422 -17.29132 -17.14417 -16.21787 -16.08560 -15.77329 -15.36736 -15.32768 -14.70020 -14.44465 -14.39576 -14.19640 -13.75108 -13.60125 -13.30223 -13.15844 -12.86079 -12.63136 -12.19861 -12.09121 -12.01062 -11.84776 -11.56701 -11.28852 -11.06806 -10.85736 -10.78519 -10.73137 -10.20631 -10.06722 -9.87857 -9.65309 -9.46817 -9.34341 -8.78360 -8.70860 -8.60397 -6.81950 -5.71987 -2.97894 0.47579 0.80321 2.77302 3.23515 3.47183 3.52470 3.53806 3.65629 3.93978 4.01555 4.05580 4.33638 4.51503 4.62827 4.82133 4.87530 4.91806 5.12009 5.18009 5.33936 5.42300 5.55460 5.59828 5.64901 5.69755 5.72265 5.77488 5.78720 5.85695 5.99550 6.05699 6.17475 6.27256 6.30561 6.37761 6.52851 6.58325 6.63193 6.90673 7.13217 7.76446 7.78845 8.47736 8.51008 9.59216 10.16759 10.52515 11.51257 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.008887 B = 0.005441 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3150.020550 B = 5144.690653 C = 6649.678259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.201 3.799 3 C 0.140 3.860 4 N -0.726 5.726 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.016 4.016 8 N -0.936 5.936 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 N -0.708 5.708 14 C 0.566 3.434 15 O -0.502 6.502 16 C -0.134 4.134 17 C -0.090 4.090 18 C 0.082 3.918 19 F -0.133 7.133 20 C -0.104 4.104 21 C -0.137 4.137 22 C 0.150 3.850 23 F -0.109 7.109 24 C -0.143 4.143 25 C -0.157 4.157 26 C -0.186 4.186 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.024 0.976 32 H 0.381 0.619 33 H 0.253 0.747 34 H 0.394 0.606 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.201 -17.519 0.982 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.116 3.884 3 C 0.012 3.988 4 N -0.370 5.370 5 C -0.360 4.360 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.586 5.586 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.208 1.208 13 N -0.360 5.360 14 C 0.352 3.648 15 O -0.377 6.377 16 C -0.139 4.139 17 C -0.110 4.110 18 C 0.062 3.938 19 F -0.112 7.112 20 C -0.123 4.123 21 C -0.156 4.156 22 C 0.129 3.871 23 F -0.087 7.087 24 C -0.163 4.163 25 C -0.195 4.195 26 C -0.223 4.223 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.215 0.785 33 H 0.063 0.937 34 H 0.229 0.771 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.127 0.873 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.830 -16.970 1.611 17.718 hybrid contribution -0.307 0.772 -0.898 1.224 sum 4.523 -16.198 0.712 16.833 Atomic orbital electron populations 1.21992 0.92935 1.01407 1.04211 1.20109 0.93789 0.92575 0.81966 1.21110 0.98911 0.87678 0.91083 1.42244 1.61351 1.10371 1.23063 1.19232 1.24875 0.87469 1.04450 0.91353 1.24671 1.00785 0.98161 0.97520 1.69648 1.39720 1.35963 1.13278 0.86210 0.77350 0.85157 0.77656 1.21895 1.21883 1.20820 1.45870 1.06752 1.56421 1.26949 1.17512 0.83041 0.79398 0.84843 1.90831 1.54636 1.44761 1.47472 1.20095 0.92390 1.03704 0.97674 1.21202 1.00803 0.96802 0.92194 1.17450 0.87296 1.00261 0.88775 1.91534 1.68280 1.84500 1.66860 1.21115 0.90898 0.99759 1.00573 1.20981 1.01517 1.00508 0.92614 1.17679 0.85949 0.95219 0.88235 1.91620 1.66575 1.83542 1.66943 1.22533 1.04115 0.90273 0.99347 1.22903 0.92516 1.02005 1.02031 1.22994 0.97771 0.99958 1.01537 0.90676 0.92827 0.90826 0.93097 0.95804 0.78472 0.93743 0.77130 0.83413 0.83407 0.83124 0.87319 0.89205 0.89499 0.89346 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.18 37.16 0.30 -1.84 16 2 C 0.20 3.26 0.55 -131.82 -0.07 3.18 16 3 C 0.14 2.97 4.83 -4.04 -0.02 2.95 16 4 N -0.73 -18.31 5.17 -59.91 -0.31 -18.62 16 5 C -0.23 -6.55 9.99 -15.06 -0.15 -6.70 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 8 N -0.94 -28.17 13.06 55.49 0.72 -27.45 16 9 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 10 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 N -0.71 -10.87 4.13 -48.58 -0.20 -11.08 16 14 C 0.57 9.76 5.03 -12.39 -0.06 9.70 16 15 O -0.50 -10.17 11.27 5.31 0.06 -10.11 16 16 C -0.13 -2.01 5.88 -104.92 -0.62 -2.62 16 17 C -0.09 -1.13 9.51 -39.11 -0.37 -1.50 16 18 C 0.08 0.94 7.29 -39.49 -0.29 0.65 16 19 F -0.13 -1.57 17.26 2.25 0.04 -1.53 16 20 C -0.10 -1.02 10.01 -39.45 -0.40 -1.41 16 21 C -0.14 -1.46 10.01 -39.57 -0.40 -1.86 16 22 C 0.15 2.16 7.28 -38.97 -0.28 1.87 16 23 F -0.11 -1.81 15.55 2.25 0.04 -1.78 16 24 C -0.14 -2.07 4.81 -90.62 -0.44 -2.51 16 25 C -0.16 -2.18 8.28 -26.69 -0.22 -2.40 16 26 C -0.19 -2.18 9.68 -26.69 -0.26 -2.44 16 27 H 0.07 1.25 6.86 -51.93 -0.36 0.90 16 28 H 0.05 0.62 6.92 -51.93 -0.36 0.27 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.05 1.22 5.96 -51.93 -0.31 0.91 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.38 9.81 6.35 -40.82 -0.26 9.55 16 33 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.39 5.07 6.53 -40.82 -0.27 4.80 16 35 H 0.15 1.59 6.42 -52.49 -0.34 1.25 16 36 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.11 1.59 8.06 -51.93 -0.42 1.17 16 39 H 0.09 1.32 5.12 -51.93 -0.27 1.06 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.98 7.21 -51.93 -0.37 0.61 16 LS Contribution 348.42 15.07 5.25 5.25 Total: -1.00 -33.29 348.42 -7.82 -41.11 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -5.03 Total: 11.71 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.36 Total: -5.49 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.21 Total: -57.14 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.06 Total: -10.11 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.07 Total: -3.31 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.29 -7.82 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753521175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.496 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds