Wall clock time and date at job start Tue Mar 31 2020 15:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46831 * 2 1 4 4 N 1.46497 * 109.46916 * 120.00338 * 2 1 3 5 5 C 1.34778 * 119.99930 * 274.99738 * 4 2 1 6 6 O 1.21283 * 119.99726 * 0.02562 * 5 4 2 7 7 C 1.50695 * 119.99970 * 180.02562 * 5 4 2 8 8 H 1.09008 * 109.47029 * 300.00379 * 7 5 4 9 9 C 1.53002 * 109.47358 * 59.99928 * 7 5 4 10 10 N 1.46893 * 109.47211 * 180.02562 * 7 5 4 11 11 C 1.46899 * 111.00125 * 298.95186 * 10 7 5 12 12 C 1.46902 * 111.00479 * 175.00123 * 10 7 5 13 13 C 1.50692 * 109.47689 * 190.00122 * 12 10 7 14 14 H 1.08001 * 119.99866 * 359.97438 * 13 12 10 15 15 C 1.37881 * 120.00456 * 179.97438 * 13 12 10 16 16 N 1.31511 * 119.99839 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00002 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47337 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46855 * 120.00063 * 17 15 13 20 20 H 1.48499 * 109.46910 * 239.99366 * 17 15 13 21 21 C 1.50696 * 109.46922 * 240.00289 * 2 1 3 22 22 C 1.38247 * 119.98658 * 100.00234 * 21 2 1 23 23 C 1.38216 * 120.01497 * 179.97438 * 22 21 2 24 24 C 1.38357 * 119.98603 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 120.01134 * 180.02562 * 24 23 22 26 26 C 1.38347 * 119.97107 * 0.28224 * 24 23 22 27 27 C 1.38219 * 119.98930 * 359.40143 * 26 24 23 28 28 H 1.08992 * 109.47157 * 299.99499 * 1 2 3 29 29 H 1.09001 * 109.47280 * 59.99804 * 1 2 3 30 30 H 1.09008 * 109.47036 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99758 * 95.00531 * 4 2 1 32 32 H 1.09001 * 109.47293 * 179.97438 * 9 7 5 33 33 H 1.08994 * 109.47109 * 300.00396 * 9 7 5 34 34 H 1.08999 * 109.46885 * 60.00408 * 9 7 5 35 35 H 1.09000 * 109.47346 * 59.99822 * 11 10 7 36 36 H 1.09003 * 109.47615 * 180.02562 * 11 10 7 37 37 H 1.09007 * 109.47418 * 300.00218 * 11 10 7 38 38 H 1.09011 * 109.46603 * 310.00041 * 12 10 7 39 39 H 1.08996 * 109.47237 * 69.99132 * 12 10 7 40 40 H 0.96999 * 120.00618 * 180.02562 * 16 15 13 41 41 H 1.08003 * 119.99321 * 359.97438 * 22 21 2 42 42 H 1.08002 * 120.00776 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.00661 * 179.71600 * 26 24 23 44 44 H 1.07997 * 119.99445 * 180.32231 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8582 1.1583 2.4117 7 6 2.6499 -0.7287 3.5874 8 1 1.9776 -1.5511 3.8324 9 6 4.0526 -1.2787 3.3213 10 7 2.6986 0.2150 4.7121 11 6 3.6158 1.3265 4.4273 12 6 3.0713 -0.4691 5.9576 13 6 2.8741 0.4660 7.1227 14 1 2.5088 1.4684 6.9549 15 6 3.1600 0.0419 8.4032 16 7 3.6043 -1.1789 8.6077 17 14 2.9161 1.2013 9.8474 18 1 2.4114 2.5077 9.3537 19 1 1.9319 0.6148 10.7922 20 1 4.2118 1.4031 10.5444 21 6 2.0323 -0.7103 -1.2305 22 6 2.4587 0.0199 -2.3242 23 6 2.9200 -0.6310 -3.4529 24 6 2.9544 -2.0137 -3.4882 25 17 3.5343 -2.8319 -4.9052 26 6 2.5216 -2.7440 -2.3958 27 6 2.0667 -2.0919 -1.2652 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2490 -1.6318 1.1525 32 1 4.4164 -1.7921 4.2113 33 1 4.0160 -1.9790 2.4869 34 1 4.7248 -0.4564 3.0763 35 1 3.2766 1.8590 3.5388 36 1 3.6333 2.0099 5.2763 37 1 4.6187 0.9353 4.2556 38 1 2.4444 -1.3510 6.0893 39 1 4.1174 -0.7712 5.9071 40 1 3.8051 -1.4775 9.5085 41 1 2.4313 1.0992 -2.2967 42 1 3.2534 -0.0604 -4.3071 43 1 2.5440 -3.8234 -2.4244 44 1 1.7337 -2.6618 -0.4104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:48 Heat of formation + Delta-G solvation = -30.897227 kcal Electronic energy + Delta-G solvation = -24863.770866 eV Core-core repulsion = 21227.193971 eV Total energy + Delta-G solvation = -3636.576895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44651 -40.33341 -38.26716 -37.52475 -36.27657 -34.80686 -33.13236 -32.07257 -31.22398 -29.90946 -29.01076 -26.98041 -25.80666 -24.67829 -23.97923 -22.68084 -21.46452 -20.81302 -18.78075 -18.34150 -17.82653 -17.29863 -16.79787 -16.39009 -16.21330 -15.97274 -15.52776 -15.38411 -15.29695 -14.78716 -14.53671 -14.45594 -14.43371 -14.19544 -13.92783 -13.52111 -13.32571 -13.12454 -12.91856 -12.80248 -12.71167 -12.54910 -12.50674 -12.36889 -12.26878 -12.13153 -11.99726 -11.95046 -11.75433 -11.33229 -10.59983 -10.54940 -10.12567 -10.02407 -9.60071 -8.92651 -8.19723 -6.28029 0.06458 0.30164 1.15176 1.40518 1.41419 1.55180 1.67201 2.07485 2.42077 2.62804 3.12716 3.37590 3.51748 3.77843 3.81629 3.93532 4.11551 4.16076 4.22115 4.27270 4.38364 4.48034 4.58119 4.63330 4.66855 4.71102 4.74688 4.85630 4.92122 4.98834 5.09816 5.15677 5.16752 5.23934 5.27260 5.29092 5.34213 5.40579 5.62407 5.66800 5.77118 6.05494 6.33135 6.45715 6.70263 6.87361 7.31160 7.40968 8.90989 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.029457 B = 0.002208 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.310742 B =12676.766295 C =13122.843717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.186 3.814 3 H 0.083 0.917 4 N -0.713 5.713 5 C 0.531 3.469 6 O -0.555 6.555 7 C 0.058 3.942 8 H 0.108 0.892 9 C -0.171 4.171 10 N -0.534 5.534 11 C 0.034 3.966 12 C 0.211 3.789 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.965 3.035 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.088 4.088 22 C -0.099 4.099 23 C -0.111 4.111 24 C -0.046 4.046 25 Cl -0.074 7.074 26 C -0.109 4.109 27 C -0.102 4.102 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.411 0.589 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.016 0.984 38 H 0.009 0.991 39 H -0.023 1.023 40 H 0.265 0.735 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -4.392 -27.801 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.082 3.918 3 H 0.102 0.898 4 N -0.368 5.368 5 C 0.317 3.683 6 O -0.432 6.432 7 C -0.054 4.054 8 H 0.126 0.874 9 C -0.230 4.230 10 N -0.258 5.258 11 C -0.114 4.114 12 C 0.086 3.914 13 C -0.563 4.563 14 H 0.073 0.927 15 C -0.194 4.194 16 N -0.570 5.570 17 Si 0.790 3.210 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.088 4.088 22 C -0.117 4.117 23 C -0.129 4.129 24 C -0.073 4.073 25 Cl -0.046 7.046 26 C -0.128 4.128 27 C -0.120 4.120 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.249 0.751 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.027 0.973 39 H -0.005 1.005 40 H 0.074 0.926 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.167 0.833 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.594 -3.532 -27.690 28.035 hybrid contribution 0.951 -0.444 0.861 1.358 sum -1.642 -3.976 -26.829 27.172 Atomic orbital electron populations 1.22127 0.93510 1.03118 1.02464 1.19736 0.94655 0.96237 0.81158 0.89849 1.46013 1.67727 1.14568 1.08467 1.20525 0.76459 0.86809 0.84491 1.90602 1.50166 1.17480 1.84955 1.21756 0.98376 0.95349 0.89954 0.87431 1.22298 0.95839 1.01687 1.03168 1.61946 1.51811 1.10067 1.02004 1.22376 0.92877 0.94378 1.01733 1.19398 0.92674 0.93338 0.86038 1.21490 1.43173 0.99654 0.91993 0.92719 1.25819 0.94929 0.96929 1.01678 1.70056 1.46224 1.18387 1.22366 0.85391 0.77910 0.78956 0.78706 1.19377 1.20204 1.20243 1.19978 0.99393 0.94323 0.95141 1.21173 0.97391 1.01177 0.91980 1.21236 0.99837 0.92311 0.99543 1.21161 1.02990 0.93297 0.89819 1.98380 1.87343 1.79256 1.39584 1.21244 0.98482 1.01348 0.91686 1.21101 0.98939 0.93508 0.98441 0.93671 0.90094 0.91069 0.75106 0.92703 0.88568 0.92645 0.90110 0.93296 0.96602 0.97286 1.00537 0.92647 0.83594 0.83466 0.83327 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.46 71.98 0.68 -2.01 16 2 C 0.19 3.41 2.78 44.25 0.12 3.53 16 3 H 0.08 1.82 7.44 -2.39 -0.02 1.80 16 4 N -0.71 -14.72 4.92 -446.10 -2.19 -16.91 16 5 C 0.53 16.31 6.84 87.66 0.60 16.91 16 6 O -0.55 -21.33 13.56 -3.04 -0.04 -21.37 16 7 C 0.06 1.97 2.76 44.17 0.12 2.09 16 8 H 0.11 3.47 8.03 -2.38 -0.02 3.45 16 9 C -0.17 -4.96 8.40 71.98 0.60 -4.36 16 10 N -0.53 -24.13 4.53 -906.04 -4.10 -28.24 16 11 C 0.03 1.49 8.57 127.69 1.09 2.58 16 12 C 0.21 11.20 4.16 85.55 0.36 11.56 16 13 C -0.52 -30.47 8.46 25.60 0.22 -30.26 16 14 H 0.05 3.22 7.12 -2.91 -0.02 3.20 16 15 C 0.00 0.26 5.46 84.66 0.46 0.73 16 16 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 17 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 C -0.09 -1.25 4.95 -19.86 -0.10 -1.35 16 22 C -0.10 -1.30 9.67 22.27 0.22 -1.09 16 23 C -0.11 -1.42 9.83 22.29 0.22 -1.20 16 24 C -0.05 -0.64 6.32 22.32 0.14 -0.50 16 25 Cl -0.07 -1.03 28.96 -2.72 -0.08 -1.11 16 26 C -0.11 -1.34 9.83 22.29 0.22 -1.12 16 27 C -0.10 -1.23 9.05 22.27 0.20 -1.03 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.41 6.14 6.29 -92.71 -0.58 5.56 16 32 H 0.05 1.84 6.75 -2.39 -0.02 1.83 16 33 H 0.10 1.92 7.56 -2.39 -0.02 1.90 16 34 H 0.05 1.68 6.39 -2.39 -0.02 1.66 16 35 H 0.08 3.37 5.44 -2.39 -0.01 3.36 16 36 H 0.05 2.29 6.76 -2.39 -0.02 2.27 16 37 H 0.02 0.64 6.28 -2.38 -0.01 0.63 16 38 H 0.01 0.51 8.00 -2.38 -0.02 0.49 16 39 H -0.02 -1.28 6.94 -2.39 -0.02 -1.30 16 40 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.15 1.53 8.04 -2.91 -0.02 1.51 16 42 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 43 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 44 H 0.15 1.25 6.91 -2.91 -0.02 1.23 16 Total: -1.00 -70.37 369.47 1.48 -68.88 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.43 Total: 12.26 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 5.16 Total: -5.52 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -6.01 Total: -100.30 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.04 Total: -21.37 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -70.37 1.48 -68.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.987 kcal (2) G-P(sol) polarization free energy of solvation -70.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds