Wall clock time and date at job start Tue Mar 31 2020 14:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.58513 * 2 1 4 4 S 1.81745 * 109.58328 * 120.27796 * 2 1 3 5 5 C 1.81739 * 102.30679 * 174.33084 * 4 2 1 6 6 C 1.53235 * 108.80061 * 305.46261 * 5 4 2 7 7 N 1.46376 * 109.48837 * 57.65352 * 6 5 4 8 8 C 1.34775 * 119.64613 * 114.89201 * 7 6 5 9 9 O 1.21593 * 120.00179 * 174.70924 * 8 7 6 10 10 N 1.34783 * 120.00202 * 354.71195 * 8 7 6 11 11 C 1.40190 * 119.99916 * 185.12374 * 10 8 7 12 12 C 1.40402 * 125.97485 * 359.97438 * 11 10 8 13 13 C 1.35242 * 107.86578 * 180.02562 * 12 11 10 14 14 N 1.34964 * 107.86217 * 359.97438 * 13 12 11 15 15 C 1.46503 * 125.97824 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47473 * 124.99958 * 15 14 13 17 17 H 1.08002 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99898 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00438 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47079 * 59.99902 * 20 18 16 22 22 H 1.48502 * 109.47295 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47001 * 299.99942 * 20 18 16 24 24 N 1.31212 * 125.96892 * 179.69354 * 11 10 8 25 25 C 1.46377 * 120.70593 * 294.91235 * 7 6 5 26 26 H 1.09002 * 109.46558 * 185.09566 * 25 7 6 27 27 C 1.52995 * 109.46410 * 305.08397 * 25 7 6 28 28 H 1.09000 * 109.47049 * 299.71957 * 1 2 3 29 29 H 1.08997 * 109.47145 * 59.72741 * 1 2 3 30 30 H 1.09005 * 109.47122 * 179.72473 * 1 2 3 31 31 H 1.08998 * 109.58397 * 185.66334 * 5 4 2 32 32 H 1.09004 * 109.58033 * 65.25503 * 5 4 2 33 33 H 1.09001 * 109.47009 * 177.66143 * 6 5 4 34 34 H 1.09003 * 109.46676 * 297.64611 * 6 5 4 35 35 H 0.96998 * 119.99390 * 5.11904 * 10 8 7 36 36 H 1.07996 * 126.06788 * 359.97438 * 12 11 10 37 37 H 1.08001 * 126.06870 * 179.97438 * 13 12 11 38 38 H 1.09006 * 109.46658 * 244.99729 * 15 14 13 39 39 H 1.09000 * 109.47185 * 4.99510 * 15 14 13 40 40 H 0.96994 * 120.00367 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.47019 * 180.02562 * 27 25 7 42 42 H 1.08998 * 109.47464 * 300.01619 * 27 25 7 43 43 H 1.09003 * 109.47248 * 60.01609 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 16 2.1392 -0.8633 1.4787 5 6 3.9337 -0.9002 1.1940 6 6 4.2040 -1.5399 -0.1720 7 7 3.5061 -0.7828 -1.2123 8 6 4.2177 -0.1262 -2.1499 9 8 3.6469 0.4242 -3.0716 10 7 5.5621 -0.0798 -2.0658 11 6 6.2952 0.6916 -2.9784 12 6 5.7610 1.4607 -4.0245 13 6 6.7905 2.0508 -4.6732 14 7 7.9344 1.6732 -4.0645 15 6 9.2882 2.0833 -4.4458 16 6 9.9824 2.6933 -3.2554 17 1 9.4666 2.7684 -2.3095 18 6 11.2759 3.1554 -3.3739 19 7 11.9042 3.0635 -4.5256 20 14 12.1362 3.9122 -1.8985 21 1 12.2112 2.9127 -0.8029 22 1 13.5085 4.3277 -2.2850 23 1 11.3725 5.0984 -1.4350 24 7 7.6004 0.8250 -3.0010 25 6 2.0436 -0.7309 -1.2451 26 1 1.7190 -0.1980 -2.1389 27 6 1.4833 -2.1543 -1.2684 28 1 -0.3633 0.5095 0.8925 29 1 -0.3633 0.5180 -0.8875 30 1 -0.3633 -1.0277 -0.0049 31 1 4.4155 -1.4888 1.9748 32 1 4.3264 0.1166 1.2054 33 1 5.2754 -1.5298 -0.3722 34 1 3.8448 -2.5690 -0.1687 35 1 6.0222 -0.5800 -1.3738 36 1 4.7139 1.5623 -4.2684 37 1 6.7114 2.7076 -5.5269 38 1 9.8489 1.2129 -4.7867 39 1 9.2326 2.8174 -5.2496 40 1 12.8141 3.3889 -4.6091 41 1 0.3943 -2.1158 -1.2932 42 1 1.8486 -2.6742 -2.1540 43 1 1.8078 -2.6872 -0.3745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129896560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:06 Heat of formation + Delta-G solvation = 68.364607 kcal Electronic energy + Delta-G solvation = -25263.669389 eV Core-core repulsion = 21665.733268 eV Total energy + Delta-G solvation = -3597.936122 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.03929 -40.02369 -37.44423 -35.20510 -34.23381 -33.25135 -31.10889 -30.75904 -29.41377 -29.16536 -26.67425 -25.60194 -23.82868 -23.08974 -21.97803 -20.66555 -20.22157 -19.31898 -18.37236 -16.92127 -16.58889 -16.53272 -16.01062 -15.77786 -15.18935 -15.02723 -14.91391 -14.64989 -14.23905 -14.09175 -13.61471 -13.39704 -13.16489 -12.82125 -12.68197 -12.57108 -12.31102 -12.23237 -12.00153 -11.94934 -11.76459 -11.32761 -11.22138 -11.08036 -10.87641 -10.49358 -10.27027 -10.13168 -10.07673 -9.71262 -9.53067 -9.18452 -8.64216 -8.14494 -7.93748 -7.44886 -6.25433 -4.30719 1.32967 2.13074 2.19423 2.58643 3.02407 3.24250 3.25599 3.27667 3.32844 3.76089 3.98294 4.19094 4.30991 4.38487 4.55253 4.62746 4.69414 4.78183 4.99551 5.07400 5.09635 5.15033 5.27016 5.37074 5.43920 5.47197 5.51297 5.59948 5.74653 5.78627 5.93562 6.09489 6.27247 6.50620 6.52980 6.77542 6.92339 7.06200 7.43490 7.66279 7.73977 7.90100 8.04182 8.45074 8.62694 8.78740 9.34908 10.83265 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.020786 B = 0.002719 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.711580 B =10295.701215 C =11089.482479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 H 0.092 0.908 4 S -0.250 6.250 5 C -0.105 4.105 6 C 0.106 3.894 7 N -0.627 5.627 8 C 0.717 3.283 9 O -0.561 6.561 10 N -0.643 5.643 11 C 0.273 3.727 12 C -0.286 4.286 13 C 0.052 3.948 14 N -0.320 5.320 15 C 0.259 3.741 16 C -0.529 4.529 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 N -0.307 5.307 25 C 0.158 3.842 26 H 0.116 0.884 27 C -0.167 4.167 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.405 0.595 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.268 0.732 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.999 -9.869 8.887 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.196 4.196 3 H 0.110 0.890 4 S -0.023 6.023 5 C -0.255 4.255 6 C -0.019 4.019 7 N -0.365 5.365 8 C 0.417 3.583 9 O -0.436 6.436 10 N -0.295 5.295 11 C 0.019 3.981 12 C -0.317 4.317 13 C -0.098 4.098 14 N -0.101 5.101 15 C 0.141 3.859 16 C -0.568 4.568 17 H 0.086 0.914 18 C -0.140 4.140 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.200 1.200 24 N -0.138 5.138 25 C 0.052 3.948 26 H 0.134 0.866 27 C -0.225 4.225 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.243 0.757 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.576 -10.108 9.518 24.822 hybrid contribution 0.987 0.957 -0.140 1.382 sum -19.589 -9.150 9.377 23.567 Atomic orbital electron populations 1.21669 0.90973 1.03450 1.03124 1.23690 1.00003 1.01620 0.94258 0.88953 1.86826 1.05875 1.77651 1.31966 1.23891 0.95225 1.05595 1.00744 1.21732 0.97729 0.96389 0.86049 1.47181 1.06181 1.53763 1.29359 1.15556 0.80845 0.79479 0.82376 1.90860 1.69378 1.49926 1.33442 1.41630 1.04491 1.49919 1.33473 1.18797 0.90267 0.96285 0.92748 1.21481 1.00728 1.08245 1.01290 1.22553 0.86128 1.01118 1.00002 1.49069 1.08016 1.33159 1.19898 1.19738 0.72841 0.96235 0.97039 1.21215 0.98711 1.40144 0.96700 0.91381 1.24940 0.96869 0.95623 0.96606 1.69905 1.13023 1.46386 1.24048 0.86389 0.78305 0.79591 0.82221 1.19943 1.21022 1.20045 1.77320 1.10178 1.16310 1.09960 1.21103 0.77675 0.97715 0.98280 0.86638 1.22259 1.01553 0.95412 1.03250 0.91454 0.90627 0.90992 0.86388 0.89181 0.89172 0.89119 0.75712 0.82282 0.81487 0.93735 0.92528 0.92252 0.90806 0.91946 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.86 8.82 37.16 0.33 -0.53 16 2 C -0.07 -0.56 3.08 -26.61 -0.08 -0.64 16 3 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 4 S -0.25 -2.16 20.28 -107.50 -2.18 -4.34 16 5 C -0.11 -0.80 6.67 37.28 0.25 -0.55 16 6 C 0.11 0.84 5.77 -3.99 -0.02 0.82 16 7 N -0.63 -6.68 2.57 -171.70 -0.44 -7.12 16 8 C 0.72 10.58 8.22 -86.91 -0.71 9.87 16 9 O -0.56 -9.94 12.80 5.28 0.07 -9.87 16 10 N -0.64 -10.05 5.35 -15.50 -0.08 -10.13 16 11 C 0.27 5.48 8.11 -154.37 -1.25 4.23 16 12 C -0.29 -5.70 9.61 -39.83 -0.38 -6.08 16 13 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 14 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 15 C 0.26 6.57 6.26 -5.19 -0.03 6.53 16 16 C -0.53 -14.68 9.23 -34.44 -0.32 -15.00 16 17 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.90 -25.27 13.29 55.43 0.74 -24.54 16 20 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 N -0.31 -7.03 12.42 31.44 0.39 -6.64 16 25 C 0.16 1.47 2.71 -67.88 -0.18 1.29 16 26 H 0.12 1.26 6.87 -51.93 -0.36 0.91 16 27 C -0.17 -1.23 8.36 37.15 0.31 -0.92 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.42 6.36 -51.93 -0.33 0.09 16 31 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.66 5.48 -51.93 -0.28 0.37 16 34 H 0.09 0.60 6.92 -51.93 -0.36 0.24 16 35 H 0.40 5.21 6.20 -40.82 -0.25 4.96 16 36 H 0.16 3.11 5.93 -52.49 -0.31 2.79 16 37 H 0.17 2.73 8.06 -52.49 -0.42 2.30 16 38 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 40 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.07 0.44 6.38 -51.93 -0.33 0.11 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.54 5.84 -51.93 -0.30 0.24 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -32.28 354.18 -9.69 -41.98 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.88 Total: 5.25 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -2.39 Total: 1.46 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.37 Total: -56.07 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.07 Total: -9.87 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -2.18 Total: -4.34 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.28 -9.69 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129896560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.342 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds