Wall clock time and date at job start Tue Mar 31 2020 14:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.58513 * 2 1 4 4 S 1.81745 * 109.58328 * 120.27796 * 2 1 3 5 5 C 1.81739 * 102.30679 * 174.33084 * 4 2 1 6 6 C 1.53235 * 108.80061 * 305.46261 * 5 4 2 7 7 N 1.46376 * 109.48837 * 57.65352 * 6 5 4 8 8 C 1.34775 * 119.64613 * 114.89201 * 7 6 5 9 9 O 1.21593 * 120.00179 * 174.70924 * 8 7 6 10 10 N 1.34783 * 120.00202 * 354.71195 * 8 7 6 11 11 C 1.40190 * 119.99916 * 185.12374 * 10 8 7 12 12 C 1.40402 * 125.97485 * 359.97438 * 11 10 8 13 13 C 1.35242 * 107.86578 * 180.02562 * 12 11 10 14 14 N 1.34964 * 107.86217 * 359.97438 * 13 12 11 15 15 C 1.46503 * 125.97824 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47473 * 124.99958 * 15 14 13 17 17 H 1.08002 * 119.99774 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99898 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00438 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47079 * 59.99902 * 20 18 16 22 22 H 1.48502 * 109.47295 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47001 * 299.99942 * 20 18 16 24 24 N 1.31212 * 125.96892 * 179.69354 * 11 10 8 25 25 C 1.46377 * 120.70593 * 294.91235 * 7 6 5 26 26 H 1.09002 * 109.46558 * 185.09566 * 25 7 6 27 27 C 1.52995 * 109.46410 * 305.08397 * 25 7 6 28 28 H 1.09000 * 109.47049 * 299.71957 * 1 2 3 29 29 H 1.08997 * 109.47145 * 59.72741 * 1 2 3 30 30 H 1.09005 * 109.47122 * 179.72473 * 1 2 3 31 31 H 1.08998 * 109.58397 * 185.66334 * 5 4 2 32 32 H 1.09004 * 109.58033 * 65.25503 * 5 4 2 33 33 H 1.09001 * 109.47009 * 177.66143 * 6 5 4 34 34 H 1.09003 * 109.46676 * 297.64611 * 6 5 4 35 35 H 0.96998 * 119.99390 * 5.11904 * 10 8 7 36 36 H 1.07996 * 126.06788 * 359.97438 * 12 11 10 37 37 H 1.08001 * 126.06870 * 179.97438 * 13 12 11 38 38 H 1.09006 * 109.46658 * 244.99729 * 15 14 13 39 39 H 1.09000 * 109.47185 * 4.99510 * 15 14 13 40 40 H 0.96994 * 120.00367 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.47019 * 180.02562 * 27 25 7 42 42 H 1.08998 * 109.47464 * 300.01619 * 27 25 7 43 43 H 1.09003 * 109.47248 * 60.01609 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 16 2.1392 -0.8633 1.4787 5 6 3.9337 -0.9002 1.1940 6 6 4.2040 -1.5399 -0.1720 7 7 3.5061 -0.7828 -1.2123 8 6 4.2177 -0.1262 -2.1499 9 8 3.6469 0.4242 -3.0716 10 7 5.5621 -0.0798 -2.0658 11 6 6.2952 0.6916 -2.9784 12 6 5.7610 1.4607 -4.0245 13 6 6.7905 2.0508 -4.6732 14 7 7.9344 1.6732 -4.0645 15 6 9.2882 2.0833 -4.4458 16 6 9.9824 2.6933 -3.2554 17 1 9.4666 2.7684 -2.3095 18 6 11.2759 3.1554 -3.3739 19 7 11.9042 3.0635 -4.5256 20 14 12.1362 3.9122 -1.8985 21 1 12.2112 2.9127 -0.8029 22 1 13.5085 4.3277 -2.2850 23 1 11.3725 5.0984 -1.4350 24 7 7.6004 0.8250 -3.0010 25 6 2.0436 -0.7309 -1.2451 26 1 1.7190 -0.1980 -2.1389 27 6 1.4833 -2.1543 -1.2684 28 1 -0.3633 0.5095 0.8925 29 1 -0.3633 0.5180 -0.8875 30 1 -0.3633 -1.0277 -0.0049 31 1 4.4155 -1.4888 1.9748 32 1 4.3264 0.1166 1.2054 33 1 5.2754 -1.5298 -0.3722 34 1 3.8448 -2.5690 -0.1687 35 1 6.0222 -0.5800 -1.3738 36 1 4.7139 1.5623 -4.2684 37 1 6.7114 2.7076 -5.5269 38 1 9.8489 1.2129 -4.7867 39 1 9.2326 2.8174 -5.2496 40 1 12.8141 3.3889 -4.6091 41 1 0.3943 -2.1158 -1.2932 42 1 1.8486 -2.6742 -2.1540 43 1 1.8078 -2.6872 -0.3745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129896560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:06 Heat of formation + Delta-G solvation = 49.879696 kcal Electronic energy + Delta-G solvation = -25264.470955 eV Core-core repulsion = 21665.733268 eV Total energy + Delta-G solvation = -3598.737688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.38276 -41.37389 -38.43327 -36.44936 -35.58651 -34.81317 -32.72797 -31.63385 -30.97355 -30.02270 -28.50476 -26.33038 -25.15384 -24.40671 -23.13486 -22.14636 -21.35423 -20.47730 -19.52626 -18.68850 -18.15195 -17.68655 -17.04908 -16.86035 -16.54128 -16.24120 -15.89417 -15.66401 -15.57293 -15.46296 -14.68356 -14.55446 -14.24077 -14.13030 -13.76561 -13.75952 -13.64536 -13.29485 -13.15630 -12.94906 -12.73612 -12.62942 -12.56994 -12.29005 -12.12128 -11.95147 -11.88264 -11.66403 -11.42787 -11.11598 -10.78155 -10.72439 -10.10661 -9.75583 -9.09897 -8.62915 -8.33228 -6.47572 0.65263 1.02674 1.04822 1.38043 1.39783 1.46140 1.48601 1.62413 1.94268 2.31177 2.34298 2.68869 2.98508 3.49468 3.67277 3.86559 3.91991 3.94757 4.05665 4.15129 4.24667 4.35948 4.39408 4.54179 4.69774 4.74067 4.76166 4.84741 4.86795 4.90986 4.92259 4.98584 5.01605 5.10764 5.18536 5.35410 5.48866 5.54908 5.62371 5.81814 5.91995 6.27127 6.50342 6.64969 7.05882 7.22401 7.26558 8.74189 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.020786 B = 0.002719 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.711580 B =10295.701215 C =11089.482479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 H 0.072 0.928 4 S -0.255 6.255 5 C -0.101 4.101 6 C 0.102 3.898 7 N -0.616 5.616 8 C 0.714 3.286 9 O -0.593 6.593 10 N -0.636 5.636 11 C 0.282 3.718 12 C -0.292 4.292 13 C 0.058 3.942 14 N -0.344 5.344 15 C 0.273 3.727 16 C -0.549 4.549 17 H 0.053 0.947 18 C 0.019 3.981 19 N -0.921 5.921 20 Si 0.971 3.029 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.270 1.270 24 N -0.345 5.345 25 C 0.154 3.846 26 H 0.098 0.902 27 C -0.158 4.158 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.142 0.858 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.417 0.583 36 H 0.166 0.834 37 H 0.201 0.799 38 H 0.022 0.978 39 H 0.059 0.941 40 H 0.273 0.727 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.041 -10.484 10.319 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.192 4.192 3 H 0.091 0.909 4 S -0.028 6.028 5 C -0.250 4.250 6 C -0.023 4.023 7 N -0.353 5.353 8 C 0.415 3.585 9 O -0.471 6.471 10 N -0.291 5.291 11 C 0.027 3.973 12 C -0.324 4.324 13 C -0.091 4.091 14 N -0.126 5.126 15 C 0.154 3.846 16 C -0.587 4.587 17 H 0.071 0.929 18 C -0.181 4.181 19 N -0.559 5.559 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.198 1.198 23 H -0.195 1.195 24 N -0.176 5.176 25 C 0.049 3.951 26 H 0.116 0.884 27 C -0.216 4.216 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.160 0.840 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.258 0.742 36 H 0.183 0.817 37 H 0.218 0.782 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.075 0.925 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.656 -10.760 10.991 26.563 hybrid contribution 1.176 1.091 -0.556 1.698 sum -20.480 -9.669 10.435 24.936 Atomic orbital electron populations 1.21682 0.89278 1.04324 1.03558 1.23640 1.01384 1.00301 0.93871 0.90948 1.86857 1.06591 1.77335 1.32010 1.23917 0.94701 1.05268 1.01157 1.21985 0.97995 0.97007 0.85268 1.47272 1.06696 1.52622 1.28706 1.15723 0.80426 0.79545 0.82801 1.90827 1.69806 1.51398 1.35034 1.41636 1.04805 1.49565 1.33057 1.19085 0.89771 0.95594 0.92871 1.21652 1.00919 1.08374 1.01420 1.23148 0.84998 1.00633 1.00297 1.48833 1.07892 1.34727 1.21142 1.19337 0.73887 0.95011 0.96326 1.21373 0.99461 1.40990 0.96845 0.92920 1.25732 0.97316 0.95769 0.99322 1.69984 1.13469 1.46800 1.25679 0.85415 0.77572 0.78740 0.78806 1.19751 1.19806 1.19524 1.77241 1.11661 1.17746 1.10996 1.21251 0.76745 0.99069 0.97990 0.88421 1.22211 1.02545 0.93643 1.03202 0.91271 0.89972 0.89851 0.84049 0.90483 0.88491 0.86987 0.74243 0.81699 0.78189 0.96039 0.92359 0.91815 0.89061 0.92533 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.82 71.98 0.64 -0.82 16 2 C -0.06 -0.98 3.08 30.67 0.09 -0.89 16 3 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 4 S -0.26 -3.91 20.28 -56.49 -1.15 -5.06 16 5 C -0.10 -1.35 6.67 72.06 0.48 -0.87 16 6 C 0.10 1.40 5.77 86.48 0.50 1.90 16 7 N -0.62 -12.45 2.57 -815.41 -2.09 -14.54 16 8 C 0.71 20.75 8.22 179.05 1.47 22.22 16 9 O -0.59 -21.01 12.80 -4.01 -0.05 -21.06 16 10 N -0.64 -19.64 5.35 -321.22 -1.72 -21.35 16 11 C 0.28 11.37 8.11 133.31 1.08 12.45 16 12 C -0.29 -11.60 9.61 22.11 0.21 -11.39 16 13 C 0.06 2.30 11.44 83.52 0.96 3.25 16 14 N -0.34 -16.21 3.67 -351.83 -1.29 -17.50 16 15 C 0.27 14.18 6.26 85.63 0.54 14.72 16 16 C -0.55 -30.92 9.23 25.60 0.24 -30.68 16 17 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 18 C 0.02 1.05 5.46 84.65 0.46 1.51 16 19 N -0.92 -52.14 13.29 21.45 0.28 -51.85 16 20 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 N -0.35 -16.07 12.42 -54.44 -0.68 -16.75 16 25 C 0.15 2.70 2.71 45.09 0.12 2.83 16 26 H 0.10 2.11 6.87 -2.39 -0.02 2.09 16 27 C -0.16 -2.00 8.36 71.98 0.60 -1.39 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.75 6.36 -2.38 -0.02 0.74 16 31 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.22 5.48 -2.39 -0.01 1.21 16 34 H 0.11 1.15 6.92 -2.39 -0.02 1.13 16 35 H 0.42 10.43 6.20 -92.71 -0.58 9.86 16 36 H 0.17 6.40 5.93 -2.91 -0.02 6.38 16 37 H 0.20 6.29 8.06 -2.91 -0.02 6.26 16 38 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.06 2.96 8.07 -2.39 -0.02 2.94 16 40 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.09 0.85 6.38 -2.39 -0.02 0.84 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.94 5.84 -2.39 -0.01 0.93 16 Total: -1.00 -69.84 354.18 3.19 -66.65 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.47 Total: 23.20 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 7.39 Total: 12.83 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -5.49 Total: -122.00 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -1.15 Total: -5.06 kcal Total: -69.84 3.19 -66.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129896560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.531 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds