Wall clock time and date at job start Tue Mar 31 2020 15:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00025 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00035 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99801 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99846 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.47212 * 90.00427 * 11 9 7 13 13 H 1.07999 * 119.99752 * 359.97438 * 12 11 9 14 14 C 1.37882 * 120.00202 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99568 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99968 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47013 * 60.00505 * 16 14 12 18 18 H 1.48503 * 109.47021 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47718 * 300.00216 * 16 14 12 20 20 C 1.50706 * 109.46748 * 120.00132 * 2 1 3 21 21 C 1.38232 * 120.00895 * 99.72268 * 20 2 1 22 22 C 1.38224 * 120.01249 * 179.74215 * 21 20 2 23 23 C 1.38256 * 120.02488 * 0.55461 * 22 21 20 24 24 C 1.38197 * 120.01428 * 359.69677 * 23 22 21 25 25 C 1.38337 * 120.00377 * 279.99165 * 20 2 1 26 26 Cl 1.73596 * 120.01198 * 0.02562 * 25 20 2 27 27 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 29 29 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 30 30 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 31 31 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 32 32 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 33 33 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 34 34 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 35 35 H 1.08996 * 109.47300 * 89.99776 * 10 9 7 36 36 H 1.09010 * 109.46976 * 209.99920 * 10 9 7 37 37 H 1.09007 * 109.47283 * 329.99472 * 10 9 7 38 38 H 1.09004 * 109.46870 * 210.00004 * 11 9 7 39 39 H 1.08996 * 109.47490 * 330.00312 * 11 9 7 40 40 H 0.97001 * 119.99819 * 179.97438 * 15 14 12 41 41 H 1.08004 * 119.99328 * 0.02562 * 21 20 2 42 42 H 1.07997 * 119.98636 * 180.25163 * 22 21 20 43 43 H 1.08001 * 119.99404 * 179.72574 * 23 22 21 44 44 H 1.08004 * 120.00608 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 6 2.6600 0.4054 -4.7515 8 8 2.3279 1.5646 -4.6216 9 7 3.0872 -0.0431 -5.9485 10 6 3.4890 -1.4432 -6.1052 11 6 3.1499 0.8694 -7.0928 12 6 4.5055 1.5262 -7.1380 13 1 5.2461 1.2879 -6.3889 14 6 4.8002 2.4312 -8.1356 15 7 3.8984 2.7208 -9.0480 16 14 6.4803 3.2457 -8.1911 17 1 7.5306 2.2051 -8.3292 18 1 6.5438 4.1707 -9.3512 19 1 6.7019 4.0095 -6.9371 20 6 2.0323 -0.7105 1.2305 21 6 2.4533 -2.0245 1.1467 22 6 2.9190 -2.6745 2.2742 23 6 2.9532 -2.0146 3.4886 24 6 2.5277 -0.7026 3.5747 25 6 2.0669 -0.0495 2.4453 26 17 1.5311 1.5982 2.5528 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.4496 -1.4980 -1.4100 31 1 2.7589 1.0460 -2.1182 32 1 1.0871 0.6161 -2.5525 33 1 3.5916 -0.9266 -3.3682 34 1 1.9200 -1.3570 -3.8029 35 1 2.6237 -2.0392 -6.3951 36 1 4.2560 -1.5170 -6.8762 37 1 3.8863 -1.8151 -5.1607 38 1 2.9867 0.3092 -8.0135 39 1 2.3792 1.6334 -6.9909 40 1 4.1056 3.3578 -9.7496 41 1 2.4227 -2.5418 0.1992 42 1 3.2516 -3.6998 2.2074 43 1 3.3130 -2.5244 4.3701 44 1 2.5549 -0.1871 4.5234 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131808862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:06 Heat of formation + Delta-G solvation = -42.290591 kcal Electronic energy + Delta-G solvation = -24378.452281 eV Core-core repulsion = 20741.381332 eV Total energy + Delta-G solvation = -3637.070949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.78604 -40.45537 -37.88639 -37.36921 -36.56800 -34.77231 -33.88460 -31.61924 -31.08480 -29.91332 -28.90753 -27.24809 -25.50270 -24.56873 -23.72474 -22.81884 -21.62757 -19.90795 -18.70504 -18.13520 -17.88174 -17.10599 -16.90809 -16.65292 -16.53054 -16.02657 -15.80333 -15.20435 -14.96716 -14.71306 -14.64137 -14.40799 -14.22924 -13.95947 -13.59918 -13.54146 -13.42105 -13.21570 -13.03809 -12.89014 -12.72448 -12.59930 -12.49845 -12.36779 -12.29616 -12.19306 -12.12430 -12.01410 -11.72049 -11.47892 -10.65030 -10.59447 -9.76337 -9.64158 -9.43306 -9.39498 -8.23103 -6.38151 0.25802 0.41289 1.21548 1.35643 1.40246 1.47435 1.86618 2.29901 2.42982 2.75315 3.05891 3.10080 3.70677 3.83881 3.98768 4.05267 4.12665 4.18081 4.25606 4.29458 4.44740 4.47023 4.56603 4.65139 4.67801 4.74964 4.81125 4.84522 4.95827 4.97708 5.00407 5.08547 5.10930 5.17893 5.22964 5.37130 5.47321 5.56062 5.57289 5.84887 5.93094 5.98025 6.05876 6.44740 6.69372 6.81394 7.27921 7.50665 8.83681 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.002327 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.647576 B =12027.997908 C =12366.705332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 H 0.072 0.928 4 N -0.670 5.670 5 C 0.086 3.914 6 C -0.116 4.116 7 C 0.492 3.508 8 O -0.604 6.604 9 N -0.612 5.612 10 C 0.078 3.922 11 C 0.258 3.742 12 C -0.544 4.544 13 H 0.053 0.947 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.968 3.032 17 H -0.259 1.259 18 H -0.278 1.278 19 H -0.279 1.279 20 C -0.074 4.074 21 C -0.092 4.092 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.053 4.053 26 Cl -0.084 7.084 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.355 0.645 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.023 0.977 39 H -0.005 1.005 40 H 0.267 0.733 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 -16.429 25.472 30.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 H 0.090 0.910 4 N -0.302 5.302 5 C -0.044 4.044 6 C -0.156 4.156 7 C 0.281 3.719 8 O -0.486 6.486 9 N -0.343 5.343 10 C -0.064 4.064 11 C 0.136 3.864 12 C -0.582 4.582 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.569 5.569 16 Si 0.792 3.208 17 H -0.183 1.183 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.075 4.075 21 C -0.111 4.111 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.080 4.080 26 Cl -0.055 7.055 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.175 0.825 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.041 0.959 39 H 0.014 0.986 40 H 0.076 0.924 41 H 0.167 0.833 42 H 0.171 0.829 43 H 0.173 0.827 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.754 -15.529 25.504 30.095 hybrid contribution -0.362 1.480 -0.776 1.710 sum -4.117 -14.049 24.728 28.737 Atomic orbital electron populations 1.22393 0.94918 1.03215 1.02549 1.20321 0.93692 0.96881 0.87920 0.90992 1.60477 1.57449 1.09667 1.02607 1.21436 0.99264 0.94581 0.89117 1.21521 1.05816 0.97917 0.90307 1.21441 0.76612 0.88738 0.85063 1.90640 1.51733 1.21493 1.84704 1.48207 1.63412 1.12396 1.10293 1.21956 1.00843 0.79638 1.03960 1.18736 0.95621 0.88385 0.83635 1.21688 0.99648 1.25318 1.11555 0.92910 1.25882 1.01558 0.96878 0.94964 1.70047 1.36126 1.35099 1.15601 0.85470 0.79317 0.78574 0.77479 1.18296 1.20273 1.20441 1.19712 1.00043 0.95264 0.92476 1.21217 0.97012 0.92776 1.00056 1.21638 0.98243 1.01431 0.92184 1.21458 0.98877 0.93501 0.99327 1.21246 0.99460 0.95871 0.97394 1.21001 1.04889 0.86240 0.95875 1.98364 1.88871 1.19869 1.98379 0.90666 0.91760 0.92636 0.82546 0.92983 0.95446 0.86508 0.85927 0.90959 0.91863 0.88402 0.95857 0.98643 0.92387 0.83336 0.82942 0.82740 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.09 71.98 0.65 -2.47 16 2 C 0.12 2.49 2.25 44.17 0.10 2.59 16 3 H 0.07 1.82 7.01 -2.39 -0.02 1.80 16 4 N -0.67 -12.98 5.09 -495.44 -2.52 -15.50 16 5 C 0.09 2.29 4.77 86.31 0.41 2.71 16 6 C -0.12 -3.00 4.51 29.85 0.13 -2.86 16 7 C 0.49 20.30 7.67 87.66 0.67 20.97 16 8 O -0.60 -31.75 15.56 -3.04 -0.05 -31.80 16 9 N -0.61 -25.93 2.86 -851.13 -2.43 -28.36 16 10 C 0.08 2.24 10.24 127.77 1.31 3.54 16 11 C 0.26 14.17 5.16 85.63 0.44 14.61 16 12 C -0.54 -31.92 9.39 25.60 0.24 -31.68 16 13 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 14 C 0.01 0.36 5.46 84.66 0.46 0.82 16 15 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 16 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 17 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 20 C -0.07 -1.39 5.09 -19.84 -0.10 -1.49 16 21 C -0.09 -1.38 9.33 22.26 0.21 -1.18 16 22 C -0.12 -1.38 10.05 22.27 0.22 -1.15 16 23 C -0.11 -1.33 10.05 22.26 0.22 -1.11 16 24 C -0.12 -1.84 9.83 22.29 0.22 -1.62 16 25 C -0.05 -1.02 6.31 22.32 0.14 -0.88 16 26 Cl -0.08 -1.72 26.63 -2.72 -0.07 -1.79 16 27 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.06 1.19 7.26 -2.39 -0.02 1.17 16 29 H 0.05 1.10 7.45 -2.39 -0.02 1.09 16 30 H 0.35 5.06 8.00 -89.70 -0.72 4.34 16 31 H 0.05 1.71 8.01 -2.39 -0.02 1.69 16 32 H 0.03 0.81 7.39 -2.39 -0.02 0.79 16 33 H 0.12 2.62 7.40 -2.39 -0.02 2.61 16 34 H 0.12 2.27 8.11 -2.39 -0.02 2.25 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.95 8.07 -2.38 -0.02 1.93 16 37 H 0.10 2.05 6.44 -2.38 -0.02 2.03 16 38 H 0.02 1.29 8.07 -2.38 -0.02 1.28 16 39 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.15 1.82 6.84 -2.91 -0.02 1.80 16 42 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 43 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 44 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -77.28 377.53 2.86 -74.42 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.28 Total: 11.40 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.34 Total: 0.81 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -4.67 Total: -100.66 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.05 Total: -31.80 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.79 kcal Total: -77.28 2.86 -74.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131808862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.134 kcal (2) G-P(sol) polarization free energy of solvation -77.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds