Wall clock time and date at job start Tue Mar 31 2020 15:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46720 * 2 1 4 4 N 1.46893 * 109.47393 * 120.00005 * 2 1 3 5 5 C 1.46894 * 111.00327 * 275.00024 * 4 2 1 6 6 C 1.53001 * 109.47021 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.47330 * 55.00659 * 6 5 4 8 8 C 1.47198 * 109.47501 * 294.99839 * 6 5 4 9 9 N 4.90937 * 82.27999 * 119.13896 * 2 1 3 10 10 C 1.53008 * 109.47057 * 175.00231 * 6 5 4 11 11 C 1.50696 * 109.47250 * 185.00062 * 10 6 5 12 12 H 1.07995 * 120.00093 * 359.97438 * 11 10 6 13 13 C 1.37877 * 119.99956 * 180.02562 * 11 10 6 14 14 N 1.31511 * 119.99835 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99879 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47056 * 90.00538 * 15 13 11 17 17 H 1.48506 * 109.46793 * 210.00301 * 15 13 11 18 18 H 1.48494 * 109.47436 * 330.00274 * 15 13 11 19 19 C 1.50702 * 109.46902 * 240.00758 * 2 1 3 20 20 C 1.38294 * 119.97003 * 279.97005 * 19 2 1 21 21 C 1.38232 * 120.11124 * 180.02562 * 20 19 2 22 22 C 1.38173 * 120.05823 * 359.97438 * 21 20 19 23 23 C 1.38705 * 119.94203 * 359.76822 * 22 21 20 24 24 O 1.35904 * 120.05924 * 180.25551 * 23 22 21 25 25 C 1.42903 * 116.99671 * 0.25297 * 24 23 22 26 26 F 1.39897 * 109.47350 * 300.00333 * 25 24 23 27 27 F 1.39906 * 109.46765 * 60.00060 * 25 24 23 28 28 C 1.38122 * 119.97497 * 100.00062 * 19 2 1 29 29 H 1.08997 * 109.47186 * 59.99882 * 1 2 3 30 30 H 1.09005 * 109.46720 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46976 * 299.99688 * 1 2 3 32 32 H 1.00904 * 110.99789 * 38.95635 * 4 2 1 33 33 H 1.08997 * 109.47564 * 300.00311 * 5 4 2 34 34 H 1.09004 * 109.47357 * 60.00165 * 5 4 2 35 35 H 1.09004 * 109.47111 * 305.00402 * 10 6 5 36 36 H 1.09004 * 109.47108 * 64.99759 * 10 6 5 37 37 H 0.97004 * 119.99922 * 180.02562 * 14 13 11 38 38 H 1.08003 * 119.94130 * 0.05120 * 20 19 2 39 39 H 1.08008 * 119.97134 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.02588 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47112 * 179.97438 * 25 24 23 42 42 H 1.08002 * 120.02504 * 359.97056 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0826 0.2225 2.3468 6 6 2.5952 -0.5333 3.5743 7 1 3.5508 -1.0020 3.3395 8 6 1.6210 -1.5690 3.9551 9 7 0.8705 -2.3688 4.2492 10 6 2.7791 0.4455 4.7359 11 6 3.3990 -0.2742 5.9059 12 1 3.6376 -1.3246 5.8289 13 6 3.6607 0.4083 7.0750 14 7 4.2021 -0.2196 8.0958 15 14 3.2474 2.2251 7.2084 16 1 1.8618 2.3813 7.7193 17 1 4.1966 2.8813 8.1431 18 1 3.3552 2.8570 5.8689 19 6 2.0323 -0.7103 -1.2306 20 6 2.0670 -2.0923 -1.2648 21 6 2.5277 -2.7468 -2.3918 22 6 2.9542 -2.0213 -3.4876 23 6 2.9154 -0.6351 -3.4579 24 8 3.3296 0.0808 -4.5363 25 6 3.7877 -0.6597 -5.6694 26 9 4.8819 -1.4489 -5.2994 27 9 2.7567 -1.4817 -6.1371 28 6 2.4582 0.0196 -2.3231 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.4496 -1.4979 1.4099 33 1 2.7588 1.0462 2.1182 34 1 1.0871 0.6162 2.5526 35 1 3.4314 1.2611 4.4239 36 1 1.8093 0.8477 5.0291 37 1 4.3859 0.2604 8.9184 38 1 1.7332 -2.6613 -0.4095 39 1 2.5534 -3.8263 -2.4162 40 1 3.3137 -2.5332 -4.3680 41 1 4.0874 0.0309 -6.4577 42 1 2.4309 1.0990 -2.2959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133706988.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:53 Heat of formation + Delta-G solvation = -102.428641 kcal Electronic energy + Delta-G solvation = -26275.181002 eV Core-core repulsion = 22083.705591 eV Total energy + Delta-G solvation = -4191.475410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.74640 -47.73672 -40.35609 -38.59012 -37.31730 -35.68995 -33.88937 -32.42838 -31.13315 -30.36993 -29.02150 -26.70304 -26.49220 -24.00662 -23.08387 -22.48558 -21.60878 -20.91498 -18.88047 -18.45584 -18.30538 -17.02917 -16.88804 -16.48923 -16.20669 -15.68553 -15.23534 -14.96966 -14.65680 -14.35763 -14.31760 -14.12921 -14.05545 -13.85158 -13.43691 -13.27227 -13.24908 -13.06648 -12.95165 -12.56934 -12.42412 -12.16437 -11.95806 -11.94705 -11.72345 -11.46721 -11.41107 -11.18576 -10.98176 -10.88681 -10.32927 -10.00772 -9.80338 -9.34455 -9.06838 -8.62635 -8.58820 -8.45151 -6.11377 -4.12148 1.09415 1.17963 2.18465 3.06358 3.25972 3.33440 3.34164 3.47321 3.50638 3.55251 3.88092 4.11575 4.22818 4.37339 4.52355 4.56228 4.67499 4.83502 4.86650 5.00546 5.14673 5.17852 5.23193 5.30521 5.38695 5.46961 5.57033 5.66274 5.76469 5.91955 5.95505 5.99724 6.13312 6.23097 6.30261 6.34524 6.43120 6.85447 6.93485 6.96762 7.11056 7.29177 7.62573 8.31207 8.41380 8.92221 9.48294 11.01740 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.002255 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.883191 B =12415.475896 C =12698.240037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.121 3.879 3 H 0.093 0.907 4 N -0.683 5.683 5 C 0.065 3.935 6 C 0.017 3.983 7 H 0.117 0.883 8 C 0.238 3.762 9 N -0.468 5.468 10 C -0.004 4.004 11 C -0.528 4.528 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.878 3.122 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.262 1.262 19 C -0.029 4.029 20 C -0.119 4.119 21 C -0.083 4.083 22 C -0.195 4.195 23 C 0.100 3.900 24 O -0.322 6.322 25 C 0.412 3.588 26 F -0.198 7.198 27 F -0.200 7.200 28 C -0.130 4.130 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.341 0.659 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.019 0.981 37 H 0.265 0.735 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.180 0.820 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.944 2.651 -30.051 30.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.011 3.989 3 H 0.111 0.889 4 N -0.313 5.313 5 C -0.065 4.065 6 C -0.005 4.005 7 H 0.135 0.865 8 C -0.079 4.079 9 N -0.145 5.145 10 C -0.043 4.043 11 C -0.566 4.566 12 H 0.092 0.908 13 C -0.132 4.132 14 N -0.535 5.535 15 Si 0.705 3.295 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.187 1.187 19 C -0.030 4.030 20 C -0.137 4.137 21 C -0.101 4.101 22 C -0.214 4.214 23 C 0.058 3.942 24 O -0.240 6.240 25 C 0.322 3.678 26 F -0.180 7.180 27 F -0.182 7.182 28 C -0.149 4.149 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.160 0.840 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.197 0.803 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.335 1.703 -29.592 29.828 hybrid contribution -0.679 0.889 0.329 1.166 sum -4.014 2.592 -29.263 29.650 Atomic orbital electron populations 1.22497 0.95960 1.02700 1.02673 1.20448 0.92819 0.97635 0.87962 0.88884 1.60629 1.57251 1.09881 1.03566 1.22155 1.00426 0.95334 0.88576 1.19076 0.94527 0.91593 0.95332 0.86514 1.29156 0.93379 0.93474 0.91922 1.81035 1.12026 1.11629 1.09762 1.19633 0.97572 0.94491 0.92581 1.21027 1.41269 0.98130 0.96167 0.90787 1.24998 0.94377 0.98233 0.95553 1.69906 1.43012 1.36690 1.03876 0.86810 0.78454 0.85694 0.78531 1.20338 1.21252 1.18666 1.19582 0.96141 0.93591 0.93676 1.20956 1.00766 0.93959 0.98024 1.20950 0.96796 0.99986 0.92401 1.21463 1.06245 0.92335 1.01312 1.18748 0.98107 0.90386 0.87001 1.86601 1.78570 1.35827 1.22983 1.23336 0.74122 0.82965 0.87421 1.93106 1.55229 1.77260 1.92419 1.93099 1.60848 1.75645 1.88619 1.20206 1.03275 1.00327 0.91069 0.91738 0.92149 0.91821 0.83975 0.88885 0.94440 0.94250 0.96289 0.92558 0.85545 0.85506 0.85306 0.80342 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.14 37.16 0.34 -1.30 16 2 C 0.12 1.21 2.79 -68.87 -0.19 1.02 16 3 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 4 N -0.68 -8.10 5.70 -107.96 -0.62 -8.71 16 5 C 0.06 0.84 4.92 -3.83 -0.02 0.82 16 6 C 0.02 0.28 2.42 -93.40 -0.23 0.06 16 7 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 8 C 0.24 4.61 12.97 -20.78 -0.27 4.34 16 9 N -0.47 -9.94 18.53 42.14 0.78 -9.16 16 10 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 11 C -0.53 -14.11 9.15 -34.44 -0.32 -14.43 16 12 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 15 Si 0.88 20.50 27.47 -169.99 -4.67 15.83 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 19 C -0.03 -0.31 4.95 -104.64 -0.52 -0.83 16 20 C -0.12 -1.27 9.32 -39.56 -0.37 -1.64 16 21 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 22 C -0.19 -2.06 8.26 -39.43 -0.33 -2.38 16 23 C 0.10 1.07 6.48 -39.22 -0.25 0.81 16 24 O -0.32 -2.90 10.43 -19.44 -0.20 -3.11 16 25 C 0.41 2.56 5.98 101.05 0.60 3.17 16 26 F -0.20 -1.63 15.57 2.25 0.04 -1.59 16 27 F -0.20 -1.56 15.60 2.25 0.04 -1.53 16 28 C -0.13 -1.34 9.61 -39.43 -0.38 -1.72 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 32 H 0.34 4.20 6.89 -39.29 -0.27 3.93 16 33 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 34 H 0.04 0.47 7.43 -51.93 -0.39 0.08 16 35 H 0.04 0.78 7.20 -51.93 -0.37 0.41 16 36 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.13 1.30 7.24 -52.48 -0.38 0.92 16 39 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 40 H 0.13 1.27 5.10 -52.49 -0.27 1.00 16 41 H 0.18 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.13 1.16 8.04 -52.49 -0.42 0.73 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -32.46 362.40 -6.30 -38.77 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.39 Total: 1.90 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.52 Total: -11.62 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.94 Total: -44.12 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -0.20 Total: -3.11 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.12 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.46 -6.30 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133706988.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.663 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds