Wall clock time and date at job start Tue Mar 31 2020 15:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46720 * 2 1 4 4 N 1.46893 * 109.47393 * 120.00005 * 2 1 3 5 5 C 1.46894 * 111.00327 * 275.00024 * 4 2 1 6 6 C 1.53001 * 109.47021 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.47330 * 55.00659 * 6 5 4 8 8 C 1.47198 * 109.47501 * 294.99839 * 6 5 4 9 9 N 4.90937 * 82.27999 * 119.13896 * 2 1 3 10 10 C 1.53008 * 109.47057 * 175.00231 * 6 5 4 11 11 C 1.50696 * 109.47250 * 185.00062 * 10 6 5 12 12 H 1.07995 * 120.00093 * 359.97438 * 11 10 6 13 13 C 1.37877 * 119.99956 * 180.02562 * 11 10 6 14 14 N 1.31511 * 119.99835 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99879 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47056 * 90.00538 * 15 13 11 17 17 H 1.48506 * 109.46793 * 210.00301 * 15 13 11 18 18 H 1.48494 * 109.47436 * 330.00274 * 15 13 11 19 19 C 1.50702 * 109.46902 * 240.00758 * 2 1 3 20 20 C 1.38294 * 119.97003 * 279.97005 * 19 2 1 21 21 C 1.38232 * 120.11124 * 180.02562 * 20 19 2 22 22 C 1.38173 * 120.05823 * 359.97438 * 21 20 19 23 23 C 1.38705 * 119.94203 * 359.76822 * 22 21 20 24 24 O 1.35904 * 120.05924 * 180.25551 * 23 22 21 25 25 C 1.42903 * 116.99671 * 0.25297 * 24 23 22 26 26 F 1.39897 * 109.47350 * 300.00333 * 25 24 23 27 27 F 1.39906 * 109.46765 * 60.00060 * 25 24 23 28 28 C 1.38122 * 119.97497 * 100.00062 * 19 2 1 29 29 H 1.08997 * 109.47186 * 59.99882 * 1 2 3 30 30 H 1.09005 * 109.46720 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46976 * 299.99688 * 1 2 3 32 32 H 1.00904 * 110.99789 * 38.95635 * 4 2 1 33 33 H 1.08997 * 109.47564 * 300.00311 * 5 4 2 34 34 H 1.09004 * 109.47357 * 60.00165 * 5 4 2 35 35 H 1.09004 * 109.47111 * 305.00402 * 10 6 5 36 36 H 1.09004 * 109.47108 * 64.99759 * 10 6 5 37 37 H 0.97004 * 119.99922 * 180.02562 * 14 13 11 38 38 H 1.08003 * 119.94130 * 0.05120 * 20 19 2 39 39 H 1.08008 * 119.97134 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.02588 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47112 * 179.97438 * 25 24 23 42 42 H 1.08002 * 120.02504 * 359.97056 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0826 0.2225 2.3468 6 6 2.5952 -0.5333 3.5743 7 1 3.5508 -1.0020 3.3395 8 6 1.6210 -1.5690 3.9551 9 7 0.8705 -2.3688 4.2492 10 6 2.7791 0.4455 4.7359 11 6 3.3990 -0.2742 5.9059 12 1 3.6376 -1.3246 5.8289 13 6 3.6607 0.4083 7.0750 14 7 4.2021 -0.2196 8.0958 15 14 3.2474 2.2251 7.2084 16 1 1.8618 2.3813 7.7193 17 1 4.1966 2.8813 8.1431 18 1 3.3552 2.8570 5.8689 19 6 2.0323 -0.7103 -1.2306 20 6 2.0670 -2.0923 -1.2648 21 6 2.5277 -2.7468 -2.3918 22 6 2.9542 -2.0213 -3.4876 23 6 2.9154 -0.6351 -3.4579 24 8 3.3296 0.0808 -4.5363 25 6 3.7877 -0.6597 -5.6694 26 9 4.8819 -1.4489 -5.2994 27 9 2.7567 -1.4817 -6.1371 28 6 2.4582 0.0196 -2.3231 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.4496 -1.4979 1.4099 33 1 2.7588 1.0462 2.1182 34 1 1.0871 0.6162 2.5526 35 1 3.4314 1.2611 4.4239 36 1 1.8093 0.8477 5.0291 37 1 4.3859 0.2604 8.9184 38 1 1.7332 -2.6613 -0.4095 39 1 2.5534 -3.8263 -2.4162 40 1 3.3137 -2.5332 -4.3680 41 1 4.0874 0.0309 -6.4577 42 1 2.4309 1.0990 -2.2959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133706988.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:52 Heat of formation + Delta-G solvation = -122.888857 kcal Electronic energy + Delta-G solvation = -26276.068223 eV Core-core repulsion = 22083.705591 eV Total energy + Delta-G solvation = -4192.362632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.28360 -48.28723 -41.08021 -39.45260 -38.45480 -36.83508 -35.53615 -34.08317 -32.18368 -31.28534 -29.92423 -28.19429 -27.04286 -24.98013 -23.94494 -23.43848 -23.28125 -21.70740 -19.53383 -19.07745 -18.89200 -18.85220 -18.27892 -17.38789 -16.96450 -16.71773 -16.17246 -16.03766 -15.61748 -15.40693 -15.12360 -14.94423 -14.81452 -14.68108 -14.62994 -14.60776 -14.32279 -14.05397 -13.90874 -13.83405 -13.56853 -13.41760 -13.19438 -13.00200 -12.68245 -12.61280 -12.53244 -12.40957 -12.14026 -11.90393 -11.79054 -11.70170 -11.45867 -11.28415 -10.72365 -9.84880 -9.37264 -9.32813 -8.23348 -6.29009 0.31323 0.40769 1.44687 1.46002 1.57228 1.65432 1.95822 1.96874 2.42471 2.59274 2.70288 3.12890 3.20011 3.25207 3.54826 3.72574 3.75296 3.87153 4.04341 4.10228 4.20168 4.30870 4.38175 4.41859 4.46985 4.58746 4.61399 4.81898 4.85900 4.95583 5.00544 5.04389 5.20089 5.23628 5.28553 5.45708 5.47708 5.54961 5.63004 5.67006 6.08119 6.13926 6.27632 6.33274 6.75870 6.81998 7.35402 8.93687 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.002255 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.883191 B =12415.475896 C =12698.240037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.125 3.875 3 H 0.109 0.891 4 N -0.689 5.689 5 C 0.076 3.924 6 C 0.023 3.977 7 H 0.117 0.883 8 C 0.248 3.752 9 N -0.506 5.506 10 C -0.002 4.002 11 C -0.531 4.531 12 H 0.027 0.973 13 C 0.000 4.000 14 N -0.956 5.956 15 Si 0.949 3.051 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.220 1.220 19 C -0.033 4.033 20 C -0.132 4.132 21 C -0.091 4.091 22 C -0.206 4.206 23 C 0.091 3.909 24 O -0.328 6.328 25 C 0.405 3.595 26 F -0.212 7.212 27 F -0.211 7.211 28 C -0.137 4.137 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.337 0.663 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.027 0.973 37 H 0.264 0.736 38 H 0.125 0.875 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.234 0.766 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 5.493 -32.405 33.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.016 3.984 3 H 0.127 0.873 4 N -0.319 5.319 5 C -0.054 4.054 6 C 0.001 3.999 7 H 0.135 0.865 8 C -0.068 4.068 9 N -0.184 5.184 10 C -0.041 4.041 11 C -0.569 4.569 12 H 0.045 0.955 13 C -0.196 4.196 14 N -0.597 5.597 15 Si 0.772 3.228 16 H -0.202 1.202 17 H -0.218 1.218 18 H -0.142 1.142 19 C -0.034 4.034 20 C -0.151 4.151 21 C -0.109 4.109 22 C -0.225 4.225 23 C 0.048 3.952 24 O -0.246 6.246 25 C 0.316 3.684 26 F -0.194 7.194 27 F -0.193 7.193 28 C -0.155 4.155 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.143 0.857 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.250 0.750 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.765 4.543 -31.995 32.534 hybrid contribution -0.505 -0.133 1.007 1.134 sum -4.270 4.409 -30.988 31.590 Atomic orbital electron populations 1.22448 0.95305 1.02407 1.03229 1.20483 0.93271 0.97976 0.86688 0.87349 1.60588 1.57699 1.09809 1.03813 1.22058 1.01334 0.95110 0.86897 1.19119 0.94225 0.90535 0.96003 0.86534 1.29717 0.92950 0.93237 0.90884 1.81035 1.13582 1.12782 1.10958 1.19590 0.97694 0.95319 0.91521 1.21423 1.40529 0.96546 0.98369 0.95481 1.26078 0.94395 1.04045 0.95099 1.70097 1.45554 1.39151 1.04864 0.85682 0.77718 0.78981 0.80426 1.20235 1.21753 1.14224 1.19682 0.96116 0.93510 0.94070 1.21059 1.01387 0.94421 0.98210 1.21161 0.96593 1.00831 0.92311 1.21593 1.06640 0.92711 1.01538 1.18944 0.97952 0.90525 0.87764 1.86596 1.78460 1.36344 1.23181 1.24270 0.73261 0.83378 0.87528 1.93077 1.55829 1.77851 1.92608 1.93074 1.61459 1.76201 1.88570 1.20422 1.03031 1.01203 0.90892 0.90606 0.92927 0.91765 0.84496 0.86572 0.93401 0.91575 0.95482 0.92718 0.85699 0.84260 0.85086 0.74999 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 9.14 71.98 0.66 -2.14 16 2 C 0.13 2.18 2.79 44.17 0.12 2.30 16 3 H 0.11 1.58 7.66 -2.38 -0.02 1.56 16 4 N -0.69 -14.79 5.70 -495.46 -2.82 -17.62 16 5 C 0.08 1.71 4.92 86.30 0.42 2.14 16 6 C 0.02 0.75 2.42 -12.60 -0.03 0.72 16 7 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 8 C 0.25 9.54 12.97 89.45 1.16 10.70 16 9 N -0.51 -21.67 18.53 20.00 0.37 -21.30 16 10 C 0.00 -0.09 3.49 29.85 0.10 0.02 16 11 C -0.53 -28.51 9.15 25.60 0.23 -28.28 16 12 H 0.03 1.65 7.84 -2.91 -0.02 1.63 16 13 C 0.00 0.01 5.47 84.66 0.46 0.48 16 14 N -0.96 -59.37 13.96 21.45 0.30 -59.07 16 15 Si 0.95 41.10 27.47 68.60 1.88 42.99 16 16 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 18 H -0.22 -7.99 6.54 99.48 0.65 -7.34 16 19 C -0.03 -0.64 4.95 -19.88 -0.10 -0.74 16 20 C -0.13 -2.74 9.32 22.28 0.21 -2.53 16 21 C -0.09 -1.82 10.04 22.25 0.22 -1.60 16 22 C -0.21 -4.20 8.26 22.37 0.18 -4.02 16 23 C 0.09 1.82 6.48 22.51 0.15 1.97 16 24 O -0.33 -5.30 10.43 -92.47 -0.96 -6.26 16 25 C 0.40 4.22 5.98 113.37 0.68 4.90 16 26 F -0.21 -3.20 15.57 44.97 0.70 -2.50 16 27 F -0.21 -3.01 15.60 44.97 0.70 -2.31 16 28 C -0.14 -2.56 9.61 22.37 0.21 -2.35 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.92 8.13 -2.38 -0.02 0.90 16 31 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 32 H 0.34 7.84 6.89 -89.69 -0.62 7.23 16 33 H 0.12 2.16 8.05 -2.39 -0.02 2.14 16 34 H 0.05 1.01 7.43 -2.38 -0.02 1.00 16 35 H 0.07 2.31 7.20 -2.38 -0.02 2.29 16 36 H 0.03 1.04 7.57 -2.38 -0.02 1.02 16 37 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 38 H 0.13 2.54 7.24 -2.91 -0.02 2.52 16 39 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.13 2.52 5.10 -2.91 -0.01 2.50 16 41 H 0.23 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.15 2.19 8.04 -2.91 -0.02 2.17 16 Total: -1.00 -72.95 362.40 5.24 -67.70 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.38 Total: 16.80 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 4.69 Total: -18.43 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -2.15 Total: -97.99 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.96 Total: -6.26 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 1.40 Total: -4.81 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.88 Total: 42.99 kcal Total: -72.95 5.24 -67.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133706988.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.187 kcal (2) G-P(sol) polarization free energy of solvation -72.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds