Wall clock time and date at job start Tue Mar 31 2020 14:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47659 * 2 1 4 4 C 1.53985 * 109.48885 * 239.97674 * 2 1 3 5 5 C 1.45820 * 113.29547 * 159.00222 * 4 2 1 6 6 S 1.82222 * 112.64890 * 65.12860 * 5 4 2 7 7 C 1.79947 * 103.24549 * 286.05258 * 6 5 4 8 8 C 1.53835 * 111.13489 * 83.98921 * 7 6 5 9 9 N 1.44681 * 109.47413 * 120.01388 * 2 1 3 10 10 C 1.34773 * 119.72549 * 38.22286 * 9 2 1 11 11 O 1.21594 * 120.00420 * 355.89645 * 10 9 2 12 12 N 1.34785 * 120.00056 * 175.89667 * 10 9 2 13 13 C 1.40194 * 119.99885 * 185.29584 * 12 10 9 14 14 C 1.40392 * 125.97500 * 359.71872 * 13 12 10 15 15 C 1.35248 * 107.86719 * 179.82352 * 14 13 12 16 16 N 1.34957 * 107.85680 * 0.43211 * 15 14 13 17 17 C 1.46500 * 125.97725 * 179.70712 * 16 15 14 18 18 C 1.50698 * 109.47591 * 124.99533 * 17 16 15 19 19 H 1.08001 * 119.99703 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00484 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99422 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00459 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46820 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47042 * 120.00244 * 22 20 18 25 25 H 1.48503 * 109.47243 * 240.00367 * 22 20 18 26 26 N 1.31207 * 125.96733 * 180.02562 * 13 12 10 27 27 H 1.08999 * 109.47936 * 284.37294 * 1 2 3 28 28 H 1.09008 * 109.47218 * 44.37436 * 1 2 3 29 29 H 1.09004 * 109.47130 * 164.36543 * 1 2 3 30 30 H 1.09006 * 108.72242 * 279.98508 * 4 2 1 31 31 H 1.09007 * 108.71847 * 38.01735 * 4 2 1 32 32 H 1.08997 * 108.85392 * 185.94497 * 5 4 2 33 33 H 1.08998 * 108.84642 * 304.31682 * 5 4 2 34 34 H 1.08992 * 109.15164 * 204.41709 * 7 6 5 35 35 H 1.09001 * 109.14933 * 323.62738 * 7 6 5 36 36 H 1.08999 * 108.38934 * 195.53309 * 8 7 6 37 37 H 1.09006 * 108.38389 * 78.37622 * 8 7 6 38 38 H 0.96997 * 119.99500 * 5.30005 * 12 10 9 39 39 H 1.08003 * 126.06964 * 0.02562 * 14 13 12 40 40 H 1.08003 * 126.06962 * 180.17557 * 15 14 13 41 41 H 1.08996 * 109.47426 * 245.00191 * 17 16 15 42 42 H 1.09005 * 109.47102 * 4.99502 * 17 16 15 43 43 H 0.97004 * 119.99181 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0437 -0.7263 -1.2569 5 6 3.4148 -0.3741 -1.6065 6 16 4.6195 -0.9098 -0.3486 7 6 4.3566 0.2558 0.9969 8 6 3.1906 -0.1890 1.8963 9 7 2.0123 -0.6823 1.1811 10 6 1.3682 -1.7778 1.6299 11 8 0.3439 -2.1457 1.0877 12 7 1.8595 -2.4657 2.6797 13 6 1.2534 -3.6658 3.0769 14 6 0.1317 -4.2609 2.4780 15 6 -0.1386 -5.4044 3.1478 16 7 0.7684 -5.5274 4.1395 17 6 0.8376 -6.6210 5.1119 18 6 2.2120 -7.2380 5.0772 19 1 2.9595 -6.8536 4.3991 20 6 2.5157 -8.2925 5.9120 21 7 1.6055 -8.7602 6.7382 22 14 4.2196 -9.0567 5.8696 23 1 5.0527 -8.3531 4.8615 24 1 4.8516 -8.9319 7.2076 25 1 4.1093 -10.4924 5.5062 26 7 1.6320 -4.4263 4.0769 27 1 -0.3635 0.2551 0.9954 28 1 -0.3634 0.7346 -0.7187 29 1 -0.3633 -0.9897 -0.2770 30 1 1.9917 -1.8016 -1.0854 31 1 1.3936 -0.4766 -2.0955 32 1 3.6672 -0.8426 -2.5577 33 1 3.4823 0.7078 -1.7203 34 1 5.2650 0.3216 1.5956 35 1 4.1312 1.2376 0.5805 36 1 2.8892 0.6579 2.5126 37 1 3.5479 -0.9794 2.5566 38 1 2.6324 -2.1304 3.1603 39 1 -0.4160 -3.8758 1.6306 40 1 -0.9407 -6.0942 2.9305 41 1 0.6388 -6.2324 6.1106 42 1 0.0935 -7.3773 4.8616 43 1 1.8190 -9.5023 7.3253 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192269806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:46 Heat of formation + Delta-G solvation = 74.453849 kcal Electronic energy + Delta-G solvation = -25562.070299 eV Core-core repulsion = 21964.398227 eV Total energy + Delta-G solvation = -3597.672072 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03754 -40.00511 -37.14976 -35.22751 -34.06646 -33.17773 -31.59428 -30.94247 -29.49365 -29.10872 -26.59336 -24.36822 -23.92621 -23.26219 -22.36341 -20.97076 -19.95270 -19.07895 -17.72229 -17.06778 -16.76871 -16.53259 -16.09221 -15.65534 -15.09701 -15.01074 -14.77812 -14.47717 -14.24983 -13.98947 -13.84299 -13.49883 -13.20387 -12.83478 -12.59036 -12.36436 -12.19102 -12.06514 -11.84883 -11.71654 -11.64144 -11.45815 -11.16378 -11.00424 -10.82892 -10.35713 -10.22667 -10.02451 -9.87454 -9.43826 -9.33113 -8.87815 -8.60661 -8.04705 -7.95098 -7.35908 -6.21511 -4.26190 1.37904 2.19313 2.38306 2.69882 3.13739 3.24489 3.31951 3.37012 3.42624 3.87404 4.07886 4.17111 4.30660 4.35757 4.49841 4.61078 4.83800 4.95774 5.05196 5.08406 5.13658 5.17303 5.22451 5.44349 5.48454 5.57064 5.58750 5.80847 5.85967 5.97862 6.16271 6.28196 6.57761 6.60530 6.68413 6.86728 6.99898 7.11912 7.54942 7.72823 7.82865 7.97801 8.11145 8.62664 8.71320 8.85035 9.39440 10.87191 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.003064 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.589865 B = 9136.875433 C =10144.102420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.164 3.836 3 H 0.078 0.922 4 C -0.142 4.142 5 C -0.075 4.075 6 S -0.240 6.240 7 C -0.105 4.105 8 C 0.108 3.892 9 N -0.613 5.613 10 C 0.722 3.278 11 O -0.557 6.557 12 N -0.643 5.643 13 C 0.277 3.723 14 C -0.285 4.285 15 C 0.050 3.950 16 N -0.321 5.321 17 C 0.259 3.741 18 C -0.526 4.526 19 H 0.069 0.931 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.282 1.282 26 N -0.309 5.309 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.404 0.596 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.577 21.237 -14.517 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.096 0.904 4 C -0.182 4.182 5 C -0.223 4.223 6 S -0.013 6.013 7 C -0.254 4.254 8 C -0.018 4.018 9 N -0.351 5.351 10 C 0.424 3.576 11 O -0.432 6.432 12 N -0.295 5.295 13 C 0.023 3.977 14 C -0.317 4.317 15 C -0.100 4.100 16 N -0.103 5.103 17 C 0.141 3.859 18 C -0.565 4.565 19 H 0.088 0.912 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.734 3.266 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.208 1.208 26 N -0.140 5.140 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.241 0.759 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.386 19.752 -13.802 24.214 hybrid contribution 0.070 0.794 -0.153 0.812 sum 2.456 20.546 -13.956 24.959 Atomic orbital electron populations 1.22290 0.92831 1.04383 1.01869 1.20769 0.95946 0.94363 0.82979 0.90426 1.21148 0.94994 1.03507 0.98539 1.22201 0.96654 1.03794 0.99679 1.86982 1.50476 1.47974 1.15895 1.23770 1.01992 1.00693 0.98985 1.21669 0.85664 1.00521 0.93976 1.46640 1.29348 1.29063 1.30042 1.15456 0.82904 0.79347 0.79909 1.90811 1.23879 1.68660 1.59858 1.41686 1.33580 1.21664 1.32574 1.18792 0.94876 0.87891 0.96175 1.21480 1.03187 0.98648 1.08375 1.22541 0.96611 0.98962 0.91860 1.49034 1.19571 1.17321 1.24325 1.19723 0.99495 0.80623 0.86059 1.21313 0.96990 1.15757 1.22396 0.91232 1.24947 0.98009 0.96413 0.94766 1.69938 1.33846 1.26340 1.23323 0.86286 0.83417 0.78813 0.78088 1.19530 1.20727 1.20772 1.77321 1.17402 0.98722 1.20531 0.92447 0.93152 0.88541 0.89830 0.89948 0.87712 0.90307 0.86299 0.89449 0.90924 0.90025 0.75851 0.82244 0.81628 0.93802 0.92583 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 7.82 37.16 0.29 -1.27 16 2 C 0.16 1.46 2.43 -68.39 -0.17 1.29 16 3 H 0.08 0.53 7.52 -51.93 -0.39 0.14 16 4 C -0.14 -1.22 4.76 -29.61 -0.14 -1.36 16 5 C -0.08 -0.57 5.79 33.76 0.20 -0.37 16 6 S -0.24 -2.34 21.62 -107.50 -2.32 -4.67 16 7 C -0.10 -0.71 5.90 37.59 0.22 -0.48 16 8 C 0.11 0.86 5.96 -3.66 -0.02 0.84 16 9 N -0.61 -6.51 2.33 -172.11 -0.40 -6.91 16 10 C 0.72 10.66 7.61 -86.91 -0.66 10.00 16 11 O -0.56 -9.42 10.27 5.28 0.05 -9.36 16 12 N -0.64 -10.38 5.33 -15.51 -0.08 -10.46 16 13 C 0.28 5.66 8.11 -154.37 -1.25 4.41 16 14 C -0.29 -5.73 9.61 -39.84 -0.38 -6.11 16 15 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 16 N -0.32 -7.56 3.67 -62.56 -0.23 -7.79 16 17 C 0.26 6.65 6.26 -5.19 -0.03 6.61 16 18 C -0.53 -14.80 9.24 -34.44 -0.32 -15.12 16 19 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.90 -25.54 13.29 55.43 0.74 -24.81 16 22 Si 0.91 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 N -0.31 -7.22 12.42 31.44 0.39 -6.83 16 27 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 28 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 29 H 0.10 1.21 6.00 -51.93 -0.31 0.90 16 30 H 0.08 1.00 7.83 -51.93 -0.41 0.59 16 31 H 0.08 0.58 7.93 -51.93 -0.41 0.17 16 32 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.08 0.45 8.11 -51.92 -0.42 0.03 16 34 H 0.12 0.65 8.14 -51.80 -0.42 0.23 16 35 H 0.09 0.45 7.91 -51.80 -0.41 0.04 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.70 5.56 -51.93 -0.29 0.41 16 38 H 0.40 5.57 6.26 -40.82 -0.26 5.32 16 39 H 0.16 3.10 5.93 -52.48 -0.31 2.79 16 40 H 0.17 2.75 8.06 -52.48 -0.42 2.33 16 41 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 43 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -32.64 354.21 -10.22 -42.86 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.12 Total: 5.22 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.56 Total: 0.87 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.41 Total: -56.80 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.05 Total: -9.36 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -2.32 Total: -4.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.64 -10.22 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192269806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.318 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds