Wall clock time and date at job start Tue Mar 31 2020 14:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47659 * 2 1 4 4 C 1.53985 * 109.48885 * 239.97674 * 2 1 3 5 5 C 1.45820 * 113.29547 * 159.00222 * 4 2 1 6 6 S 1.82222 * 112.64890 * 65.12860 * 5 4 2 7 7 C 1.79947 * 103.24549 * 286.05258 * 6 5 4 8 8 C 1.53835 * 111.13489 * 83.98921 * 7 6 5 9 9 N 1.44681 * 109.47413 * 120.01388 * 2 1 3 10 10 C 1.34773 * 119.72549 * 38.22286 * 9 2 1 11 11 O 1.21594 * 120.00420 * 355.89645 * 10 9 2 12 12 N 1.34785 * 120.00056 * 175.89667 * 10 9 2 13 13 C 1.40194 * 119.99885 * 185.29584 * 12 10 9 14 14 C 1.40392 * 125.97500 * 359.71872 * 13 12 10 15 15 C 1.35248 * 107.86719 * 179.82352 * 14 13 12 16 16 N 1.34957 * 107.85680 * 0.43211 * 15 14 13 17 17 C 1.46500 * 125.97725 * 179.70712 * 16 15 14 18 18 C 1.50698 * 109.47591 * 124.99533 * 17 16 15 19 19 H 1.08001 * 119.99703 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00484 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99422 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00459 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46820 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47042 * 120.00244 * 22 20 18 25 25 H 1.48503 * 109.47243 * 240.00367 * 22 20 18 26 26 N 1.31207 * 125.96733 * 180.02562 * 13 12 10 27 27 H 1.08999 * 109.47936 * 284.37294 * 1 2 3 28 28 H 1.09008 * 109.47218 * 44.37436 * 1 2 3 29 29 H 1.09004 * 109.47130 * 164.36543 * 1 2 3 30 30 H 1.09006 * 108.72242 * 279.98508 * 4 2 1 31 31 H 1.09007 * 108.71847 * 38.01735 * 4 2 1 32 32 H 1.08997 * 108.85392 * 185.94497 * 5 4 2 33 33 H 1.08998 * 108.84642 * 304.31682 * 5 4 2 34 34 H 1.08992 * 109.15164 * 204.41709 * 7 6 5 35 35 H 1.09001 * 109.14933 * 323.62738 * 7 6 5 36 36 H 1.08999 * 108.38934 * 195.53309 * 8 7 6 37 37 H 1.09006 * 108.38389 * 78.37622 * 8 7 6 38 38 H 0.96997 * 119.99500 * 5.30005 * 12 10 9 39 39 H 1.08003 * 126.06964 * 0.02562 * 14 13 12 40 40 H 1.08003 * 126.06962 * 180.17557 * 15 14 13 41 41 H 1.08996 * 109.47426 * 245.00191 * 17 16 15 42 42 H 1.09005 * 109.47102 * 4.99502 * 17 16 15 43 43 H 0.97004 * 119.99181 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0437 -0.7263 -1.2569 5 6 3.4148 -0.3741 -1.6065 6 16 4.6195 -0.9098 -0.3486 7 6 4.3566 0.2558 0.9969 8 6 3.1906 -0.1890 1.8963 9 7 2.0123 -0.6823 1.1811 10 6 1.3682 -1.7778 1.6299 11 8 0.3439 -2.1457 1.0877 12 7 1.8595 -2.4657 2.6797 13 6 1.2534 -3.6658 3.0769 14 6 0.1317 -4.2609 2.4780 15 6 -0.1386 -5.4044 3.1478 16 7 0.7684 -5.5274 4.1395 17 6 0.8376 -6.6210 5.1119 18 6 2.2120 -7.2380 5.0772 19 1 2.9595 -6.8536 4.3991 20 6 2.5157 -8.2925 5.9120 21 7 1.6055 -8.7602 6.7382 22 14 4.2196 -9.0567 5.8696 23 1 5.0527 -8.3531 4.8615 24 1 4.8516 -8.9319 7.2076 25 1 4.1093 -10.4924 5.5062 26 7 1.6320 -4.4263 4.0769 27 1 -0.3635 0.2551 0.9954 28 1 -0.3634 0.7346 -0.7187 29 1 -0.3633 -0.9897 -0.2770 30 1 1.9917 -1.8016 -1.0854 31 1 1.3936 -0.4766 -2.0955 32 1 3.6672 -0.8426 -2.5577 33 1 3.4823 0.7078 -1.7203 34 1 5.2650 0.3216 1.5956 35 1 4.1312 1.2376 0.5805 36 1 2.8892 0.6579 2.5126 37 1 3.5479 -0.9794 2.5566 38 1 2.6324 -2.1304 3.1603 39 1 -0.4160 -3.8758 1.6306 40 1 -0.9407 -6.0942 2.9305 41 1 0.6388 -6.2324 6.1106 42 1 0.0935 -7.3773 4.8616 43 1 1.8190 -9.5023 7.3253 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192269806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:45 Heat of formation + Delta-G solvation = 55.376606 kcal Electronic energy + Delta-G solvation = -25562.897550 eV Core-core repulsion = 21964.398227 eV Total energy + Delta-G solvation = -3598.499324 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.33970 -41.38946 -38.15169 -36.41505 -35.55628 -34.66600 -32.67899 -32.29150 -30.94762 -30.21549 -28.47865 -25.44744 -24.77991 -24.54901 -23.54530 -22.37973 -21.43941 -20.34991 -18.69842 -18.68794 -18.25553 -17.56386 -17.42920 -16.70440 -16.58899 -16.11078 -15.83862 -15.66522 -15.55228 -15.16231 -14.72702 -14.52553 -14.40908 -14.16057 -13.92538 -13.80510 -13.59875 -13.23783 -13.07733 -12.84451 -12.70532 -12.57642 -12.33027 -12.30620 -12.18493 -12.02116 -11.83765 -11.53879 -11.33675 -10.71911 -10.65500 -10.51664 -9.82157 -9.65177 -9.00713 -8.69137 -8.32542 -6.46633 0.77031 1.11097 1.14960 1.36990 1.38385 1.51893 1.64123 1.73383 2.06308 2.35526 2.43969 2.82773 2.98772 3.54759 3.65128 3.89626 3.92665 4.04004 4.19542 4.28590 4.33915 4.44826 4.53094 4.56901 4.63205 4.76385 4.81331 4.87889 4.90039 4.91682 4.97169 5.00751 5.03726 5.12556 5.27385 5.50108 5.57149 5.72568 5.77329 5.85281 6.01532 6.31247 6.61323 6.69134 7.14005 7.23388 7.46511 8.75007 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.003064 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.589865 B = 9136.875433 C =10144.102420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 H 0.114 0.886 4 C -0.133 4.133 5 C -0.061 4.061 6 S -0.316 6.316 7 C -0.085 4.085 8 C 0.100 3.900 9 N -0.602 5.602 10 C 0.716 3.284 11 O -0.582 6.582 12 N -0.641 5.641 13 C 0.286 3.714 14 C -0.290 4.290 15 C 0.055 3.945 16 N -0.345 5.345 17 C 0.273 3.727 18 C -0.546 4.546 19 H 0.051 0.949 20 C 0.019 3.981 21 N -0.921 5.921 22 Si 0.971 3.029 23 H -0.276 1.276 24 H -0.272 1.272 25 H -0.269 1.269 26 N -0.351 5.351 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.413 0.587 39 H 0.168 0.832 40 H 0.200 0.800 41 H 0.021 0.979 42 H 0.058 0.942 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.384 23.346 -15.693 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.056 3.944 3 H 0.132 0.868 4 C -0.174 4.174 5 C -0.208 4.208 6 S -0.090 6.090 7 C -0.234 4.234 8 C -0.025 4.025 9 N -0.339 5.339 10 C 0.418 3.582 11 O -0.459 6.459 12 N -0.295 5.295 13 C 0.030 3.970 14 C -0.322 4.322 15 C -0.093 4.093 16 N -0.127 5.127 17 C 0.154 3.846 18 C -0.584 4.584 19 H 0.069 0.931 20 C -0.182 4.182 21 N -0.559 5.559 22 Si 0.796 3.204 23 H -0.201 1.201 24 H -0.197 1.197 25 H -0.194 1.194 26 N -0.182 5.182 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.151 0.849 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.253 0.747 39 H 0.185 0.815 40 H 0.217 0.783 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.210 21.914 -15.001 26.751 hybrid contribution -0.232 0.271 0.121 0.377 sum 2.978 22.186 -14.881 26.880 Atomic orbital electron populations 1.22179 0.93673 1.03368 1.01583 1.21035 0.95322 0.95851 0.82189 0.86782 1.21065 0.96262 1.00886 0.99150 1.22186 0.94682 1.05450 0.98499 1.87306 1.52155 1.50565 1.18958 1.23788 1.01856 1.00411 0.97349 1.21928 0.85204 1.01146 0.94252 1.46704 1.29502 1.27435 1.30225 1.15700 0.82950 0.80147 0.79406 1.90800 1.25121 1.69644 1.60360 1.41784 1.33848 1.20554 1.33271 1.19105 0.94493 0.88513 0.94867 1.21663 1.03275 0.98662 1.08551 1.23145 0.96361 0.99413 0.90429 1.48794 1.21055 1.17552 1.25326 1.19318 0.98483 0.81064 0.85694 1.21428 0.97771 1.16567 1.22661 0.93118 1.25733 1.01736 0.96583 0.94126 1.70008 1.35555 1.26738 1.23641 0.85307 0.78717 0.78242 0.78184 1.20065 1.19729 1.19431 1.77235 1.18832 0.99631 1.22504 0.94012 0.90394 0.91561 0.93825 0.87997 0.87415 0.87354 0.84891 0.86753 0.88019 0.91082 0.74704 0.81496 0.78319 0.96108 0.92391 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 7.82 71.98 0.56 -2.18 16 2 C 0.16 2.41 2.43 45.66 0.11 2.52 16 3 H 0.11 0.98 7.52 -2.39 -0.02 0.97 16 4 C -0.13 -2.04 4.76 28.73 0.14 -1.90 16 5 C -0.06 -0.76 5.79 69.78 0.40 -0.35 16 6 S -0.32 -5.73 21.62 -56.49 -1.22 -6.95 16 7 C -0.09 -0.88 5.90 72.26 0.43 -0.45 16 8 C 0.10 1.34 5.96 86.68 0.52 1.86 16 9 N -0.60 -11.77 2.33 -816.68 -1.90 -13.68 16 10 C 0.72 20.95 7.61 179.05 1.36 22.32 16 11 O -0.58 -19.88 10.27 -4.01 -0.04 -19.92 16 12 N -0.64 -20.83 5.33 -321.23 -1.71 -22.54 16 13 C 0.29 11.92 8.11 133.31 1.08 13.00 16 14 C -0.29 -11.77 9.61 22.10 0.21 -11.56 16 15 C 0.05 2.25 11.44 83.52 0.96 3.20 16 16 N -0.35 -16.72 3.67 -351.85 -1.29 -18.01 16 17 C 0.27 14.51 6.26 85.63 0.54 15.04 16 18 C -0.55 -31.49 9.24 25.60 0.24 -31.25 16 19 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 20 C 0.02 1.04 5.46 84.65 0.46 1.50 16 21 N -0.92 -52.80 13.29 21.45 0.28 -52.51 16 22 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 N -0.35 -16.91 12.42 -54.44 -0.68 -17.58 16 27 H 0.04 0.88 8.05 -2.39 -0.02 0.86 16 28 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.07 1.64 6.00 -2.38 -0.01 1.63 16 30 H 0.04 1.04 7.83 -2.38 -0.02 1.02 16 31 H 0.10 1.17 7.93 -2.38 -0.02 1.15 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 0.75 8.11 -2.39 -0.02 0.73 16 34 H 0.13 1.04 8.14 -2.47 -0.02 1.02 16 35 H 0.11 0.60 7.91 -2.47 -0.02 0.58 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 1.12 5.56 -2.38 -0.01 1.11 16 38 H 0.41 11.45 6.26 -92.71 -0.58 10.87 16 39 H 0.17 6.53 5.93 -2.91 -0.02 6.52 16 40 H 0.20 6.45 8.06 -2.91 -0.02 6.43 16 41 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 3.00 8.07 -2.38 -0.02 2.98 16 43 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -73.31 354.21 2.92 -70.39 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.45 Total: 22.65 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 7.00 Total: 11.74 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -5.30 Total: -124.32 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.04 Total: -19.92 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -5.73 SS G_CDS: -1.22 Total: -6.95 kcal Total: -73.31 2.92 -70.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192269806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.768 kcal (2) G-P(sol) polarization free energy of solvation -73.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds