Wall clock time and date at job start Tue Mar 31 2020 14:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.52151 * 2 1 4 4 C 1.53191 * 109.49796 * 239.91747 * 2 1 3 5 5 N 1.46933 * 108.77496 * 185.41219 * 4 2 1 6 6 C 1.34769 * 120.63232 * 233.63047 * 5 4 2 7 7 O 1.21584 * 119.99876 * 355.13665 * 6 5 4 8 8 N 1.34777 * 120.00119 * 175.13583 * 6 5 4 9 9 C 1.39243 * 120.00139 * 185.27457 * 8 6 5 10 10 C 1.39480 * 119.83121 * 213.34306 * 9 8 6 11 11 C 1.36381 * 120.16607 * 179.76010 * 10 9 8 12 12 C 1.40861 * 119.82485 * 0.53213 * 11 10 9 13 13 C 1.41167 * 120.16084 * 179.69739 * 12 11 10 14 14 H 1.07995 * 119.99677 * 209.26492 * 13 12 11 15 15 C 1.39894 * 119.99666 * 29.26228 * 13 12 11 16 16 N 1.30871 * 120.00252 * 10.20922 * 15 13 12 17 17 Si 1.86805 * 119.99517 * 190.20237 * 15 13 12 18 18 H 1.48499 * 109.47169 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46783 * 120.00375 * 17 15 13 20 20 H 1.48493 * 109.47194 * 239.99861 * 17 15 13 21 21 C 1.40864 * 119.67949 * 359.72046 * 12 11 10 22 22 C 1.36375 * 119.82250 * 359.97438 * 21 12 11 23 23 C 1.46930 * 118.73499 * 53.61040 * 5 4 2 24 24 C 1.53196 * 108.77550 * 306.39279 * 23 5 4 25 25 C 1.53030 * 109.31393 * 54.63321 * 24 23 5 26 26 F 1.39905 * 109.45985 * 178.61299 * 25 24 23 27 27 F 1.39902 * 109.44888 * 58.64949 * 25 24 23 28 28 H 1.09007 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47181 * 300.08125 * 1 2 3 30 30 H 1.09005 * 109.47096 * 60.08301 * 1 2 3 31 31 H 1.09001 * 109.58931 * 305.19790 * 4 2 1 32 32 H 1.08998 * 109.58614 * 65.62929 * 4 2 1 33 33 H 0.97003 * 119.99791 * 5.27988 * 8 6 5 34 34 H 1.07998 * 119.91584 * 359.97438 * 10 9 8 35 35 H 1.07993 * 120.08104 * 180.25324 * 11 10 9 36 36 H 0.96997 * 119.99942 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.09011 * 179.97438 * 21 12 11 38 38 H 1.08007 * 119.91295 * 179.97438 * 22 21 12 39 39 H 1.08994 * 109.58281 * 186.60120 * 23 5 4 40 40 H 1.09003 * 109.58897 * 66.17682 * 23 5 4 41 41 H 1.08999 * 109.49567 * 294.68375 * 24 23 5 42 42 H 1.08995 * 109.49381 * 174.59376 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5047 -0.8291 -1.1695 6 6 4.2812 -0.3856 -2.1778 7 8 3.7714 0.0256 -3.2021 8 7 5.6229 -0.3980 -2.0507 9 6 6.4217 0.1605 -3.0451 10 6 7.6708 -0.3936 -3.3245 11 6 8.4567 0.1450 -4.3004 12 6 8.0086 1.2704 -5.0192 13 6 8.8190 1.8375 -6.0264 14 1 8.7496 2.8929 -6.2448 15 6 9.7119 1.0323 -6.7416 16 7 9.6583 -0.2698 -6.6224 17 14 10.9805 1.8160 -7.8667 18 1 10.8341 3.2932 -7.8248 19 1 12.3438 1.4410 -7.4125 20 1 10.7726 1.3367 -9.2567 21 6 6.7481 1.8276 -4.7278 22 6 5.9708 1.2743 -3.7534 23 6 4.1053 -1.4267 0.0309 24 6 3.5707 -0.6950 1.2661 25 6 2.0408 -0.7231 1.2484 26 9 1.5496 -0.0831 2.3914 27 9 1.5994 -2.0505 1.2314 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5151 0.8893 30 1 -0.3633 0.5126 -0.8908 31 1 1.6053 -1.7217 -1.2980 32 1 1.7638 -0.1580 -2.1388 33 1 6.0321 -0.7961 -1.2665 34 1 8.0151 -1.2533 -2.7689 35 1 9.4219 -0.2876 -4.5183 36 1 10.2772 -0.8281 -7.1186 37 1 6.3981 2.6908 -5.2745 38 1 5.0043 1.7006 -3.5284 39 1 5.1895 -1.3246 -0.0136 40 1 3.8375 -2.4818 0.0869 41 1 3.9158 0.3389 1.2542 42 1 3.9334 -1.1896 2.1671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290424286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:10 Heat of formation + Delta-G solvation = -102.849959 kcal Electronic energy + Delta-G solvation = -27441.854149 eV Core-core repulsion = 23250.360469 eV Total energy + Delta-G solvation = -4191.493680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.27256 -47.22647 -40.39752 -38.05232 -36.82017 -34.64950 -33.88914 -32.72826 -31.88331 -29.59237 -28.90884 -27.14705 -25.65956 -24.38620 -23.13157 -21.70371 -21.03715 -20.53947 -19.36078 -18.36888 -17.53591 -17.29650 -16.96243 -16.64541 -16.44944 -15.42258 -15.28964 -15.08100 -14.51526 -14.19029 -13.92861 -13.87418 -13.54601 -13.47048 -13.23806 -13.10899 -13.00996 -12.71306 -12.68634 -12.29296 -12.14209 -12.09060 -11.79275 -11.56192 -11.49269 -11.31707 -11.14595 -10.99027 -10.74811 -10.64055 -10.05006 -9.56439 -9.53501 -9.24928 -8.95774 -8.76736 -7.54617 -6.90948 -6.68230 -4.30523 2.57082 2.73150 3.07694 3.08900 3.11833 3.14464 3.42396 3.57530 3.70974 3.91884 3.95805 4.08203 4.16228 4.37509 4.67342 4.71284 4.88946 4.93912 5.00873 5.09309 5.25895 5.31690 5.48193 5.50321 5.60369 5.69237 5.71362 5.85288 6.16651 6.29214 6.40465 6.74979 6.75599 7.02703 7.10400 7.23740 7.32543 7.62010 7.82179 7.92742 8.05637 8.29071 8.36930 8.62010 8.88134 8.91131 9.04338 10.24624 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.036888 B = 0.002443 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.865299 B =11460.636558 C =11730.389684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 H 0.104 0.896 4 C 0.138 3.862 5 N -0.639 5.639 6 C 0.700 3.300 7 O -0.571 6.571 8 N -0.664 5.664 9 C 0.015 3.985 10 C -0.118 4.118 11 C -0.145 4.145 12 C 0.103 3.897 13 C -0.459 4.459 14 H 0.077 0.923 15 C 0.071 3.929 16 N -0.803 5.803 17 Si 0.911 3.089 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.275 1.275 21 C -0.209 4.209 22 C -0.080 4.080 23 C 0.114 3.886 24 C -0.175 4.175 25 C 0.294 3.706 26 F -0.200 7.200 27 F -0.197 7.197 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.390 0.610 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.278 0.722 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.146 -3.074 15.501 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 H 0.122 0.878 4 C 0.014 3.986 5 N -0.378 5.378 6 C 0.402 3.598 7 O -0.447 6.447 8 N -0.312 5.312 9 C -0.077 4.077 10 C -0.139 4.139 11 C -0.165 4.165 12 C 0.100 3.900 13 C -0.489 4.489 14 H 0.095 0.905 15 C -0.145 4.145 16 N -0.429 5.429 17 Si 0.736 3.264 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.200 1.200 21 C -0.229 4.229 22 C -0.100 4.100 23 C -0.010 4.010 24 C -0.214 4.214 25 C 0.258 3.742 26 F -0.181 7.181 27 F -0.178 7.178 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.226 0.774 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.119 0.881 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.423 -2.991 14.660 18.824 hybrid contribution 0.690 -0.156 0.109 0.716 sum -10.733 -3.147 14.769 18.527 Atomic orbital electron populations 1.21768 0.92347 1.03283 1.03392 1.22572 0.98604 1.01750 0.93561 0.87750 1.21435 0.78609 1.01007 0.97549 1.47321 1.06178 1.65928 1.18356 1.15874 0.81840 0.79168 0.82917 1.90926 1.72936 1.53139 1.27698 1.42318 1.03662 1.61916 1.23314 1.17005 0.93413 0.98621 0.98711 1.20209 0.94679 0.99105 0.99887 1.20940 1.00304 0.99755 0.95480 1.17678 0.90241 0.91357 0.90696 1.19566 1.17455 0.96305 1.15575 0.90469 1.25893 0.97027 0.94594 0.96958 1.69814 1.32687 1.04563 1.35841 0.86219 0.80136 0.80504 0.79578 1.18508 1.19856 1.20040 1.20702 0.95515 1.04054 1.02661 1.20264 0.98520 0.94195 0.97036 1.21540 0.98799 0.97491 0.83161 1.22954 0.92227 1.05121 1.01111 1.21030 0.93206 0.75882 0.84097 1.93003 1.89693 1.81872 1.53559 1.92989 1.91182 1.36834 1.96790 0.91565 0.91467 0.90839 0.90848 0.87349 0.77440 0.89225 0.85852 0.91068 0.88672 0.87960 0.88940 0.90241 0.88087 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.95 37.16 0.33 -0.85 16 2 C -0.14 -1.34 2.53 -90.50 -0.23 -1.56 16 3 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.14 1.53 5.50 -3.71 -0.02 1.51 16 5 N -0.64 -8.08 2.97 -178.49 -0.53 -8.61 16 6 C 0.70 12.23 8.02 -86.92 -0.70 11.54 16 7 O -0.57 -12.42 13.44 5.29 0.07 -12.35 16 8 N -0.66 -11.53 5.22 -14.10 -0.07 -11.61 16 9 C 0.02 0.33 6.29 -83.57 -0.53 -0.19 16 10 C -0.12 -2.67 9.89 -39.79 -0.39 -3.06 16 11 C -0.14 -3.69 8.60 -39.26 -0.34 -4.02 16 12 C 0.10 2.74 5.55 -106.80 -0.59 2.15 16 13 C -0.46 -12.16 9.04 -37.85 -0.34 -12.50 16 14 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 15 C 0.07 1.79 5.26 -17.34 -0.09 1.70 16 16 N -0.80 -20.77 10.84 55.54 0.60 -20.17 16 17 Si 0.91 18.72 29.57 -169.99 -5.03 13.69 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 21 C -0.21 -5.28 9.74 -39.26 -0.38 -5.67 16 22 C -0.08 -1.91 8.57 -39.79 -0.34 -2.25 16 23 C 0.11 1.03 6.23 -3.71 -0.02 1.01 16 24 C -0.18 -1.38 5.62 -26.61 -0.15 -1.53 16 25 C 0.29 2.75 1.63 -26.70 -0.04 2.71 16 26 F -0.20 -2.08 16.50 2.25 0.04 -2.04 16 27 F -0.20 -2.03 15.63 2.25 0.04 -2.00 16 28 H 0.07 0.51 7.84 -51.93 -0.41 0.11 16 29 H 0.07 0.51 7.78 -51.93 -0.40 0.11 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 32 H 0.11 1.38 7.03 -51.93 -0.37 1.01 16 33 H 0.39 5.27 6.27 -40.82 -0.26 5.01 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.12 3.22 6.23 -52.49 -0.33 2.90 16 36 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 37 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 38 H 0.10 2.41 6.41 -52.48 -0.34 2.07 16 39 H 0.09 0.73 5.57 -51.93 -0.29 0.45 16 40 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -30.85 344.71 -8.82 -39.67 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.29 Total: 9.23 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -3.84 Total: -11.02 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.00 Total: -40.38 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.07 Total: -4.04 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.85 -8.82 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290424286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.181 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds