Wall clock time and date at job start Tue Mar 31 2020 14:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.52151 * 2 1 4 4 C 1.53191 * 109.49796 * 239.91747 * 2 1 3 5 5 N 1.46933 * 108.77496 * 185.41219 * 4 2 1 6 6 C 1.34769 * 120.63232 * 233.63047 * 5 4 2 7 7 O 1.21584 * 119.99876 * 355.13665 * 6 5 4 8 8 N 1.34777 * 120.00119 * 175.13583 * 6 5 4 9 9 C 1.39243 * 120.00139 * 185.27457 * 8 6 5 10 10 C 1.39480 * 119.83121 * 213.34306 * 9 8 6 11 11 C 1.36381 * 120.16607 * 179.76010 * 10 9 8 12 12 C 1.40861 * 119.82485 * 0.53213 * 11 10 9 13 13 C 1.41167 * 120.16084 * 179.69739 * 12 11 10 14 14 H 1.07995 * 119.99677 * 209.26492 * 13 12 11 15 15 C 1.39894 * 119.99666 * 29.26228 * 13 12 11 16 16 N 1.30871 * 120.00252 * 10.20922 * 15 13 12 17 17 Si 1.86805 * 119.99517 * 190.20237 * 15 13 12 18 18 H 1.48499 * 109.47169 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46783 * 120.00375 * 17 15 13 20 20 H 1.48493 * 109.47194 * 239.99861 * 17 15 13 21 21 C 1.40864 * 119.67949 * 359.72046 * 12 11 10 22 22 C 1.36375 * 119.82250 * 359.97438 * 21 12 11 23 23 C 1.46930 * 118.73499 * 53.61040 * 5 4 2 24 24 C 1.53196 * 108.77550 * 306.39279 * 23 5 4 25 25 C 1.53030 * 109.31393 * 54.63321 * 24 23 5 26 26 F 1.39905 * 109.45985 * 178.61299 * 25 24 23 27 27 F 1.39902 * 109.44888 * 58.64949 * 25 24 23 28 28 H 1.09007 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47181 * 300.08125 * 1 2 3 30 30 H 1.09005 * 109.47096 * 60.08301 * 1 2 3 31 31 H 1.09001 * 109.58931 * 305.19790 * 4 2 1 32 32 H 1.08998 * 109.58614 * 65.62929 * 4 2 1 33 33 H 0.97003 * 119.99791 * 5.27988 * 8 6 5 34 34 H 1.07998 * 119.91584 * 359.97438 * 10 9 8 35 35 H 1.07993 * 120.08104 * 180.25324 * 11 10 9 36 36 H 0.96997 * 119.99942 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.09011 * 179.97438 * 21 12 11 38 38 H 1.08007 * 119.91295 * 179.97438 * 22 21 12 39 39 H 1.08994 * 109.58281 * 186.60120 * 23 5 4 40 40 H 1.09003 * 109.58897 * 66.17682 * 23 5 4 41 41 H 1.08999 * 109.49567 * 294.68375 * 24 23 5 42 42 H 1.08995 * 109.49381 * 174.59376 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5047 -0.8291 -1.1695 6 6 4.2812 -0.3856 -2.1778 7 8 3.7714 0.0256 -3.2021 8 7 5.6229 -0.3980 -2.0507 9 6 6.4217 0.1605 -3.0451 10 6 7.6708 -0.3936 -3.3245 11 6 8.4567 0.1450 -4.3004 12 6 8.0086 1.2704 -5.0192 13 6 8.8190 1.8375 -6.0264 14 1 8.7496 2.8929 -6.2448 15 6 9.7119 1.0323 -6.7416 16 7 9.6583 -0.2698 -6.6224 17 14 10.9805 1.8160 -7.8667 18 1 10.8341 3.2932 -7.8248 19 1 12.3438 1.4410 -7.4125 20 1 10.7726 1.3367 -9.2567 21 6 6.7481 1.8276 -4.7278 22 6 5.9708 1.2743 -3.7534 23 6 4.1053 -1.4267 0.0309 24 6 3.5707 -0.6950 1.2661 25 6 2.0408 -0.7231 1.2484 26 9 1.5496 -0.0831 2.3914 27 9 1.5994 -2.0505 1.2314 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5151 0.8893 30 1 -0.3633 0.5126 -0.8908 31 1 1.6053 -1.7217 -1.2980 32 1 1.7638 -0.1580 -2.1388 33 1 6.0321 -0.7961 -1.2665 34 1 8.0151 -1.2533 -2.7689 35 1 9.4219 -0.2876 -4.5183 36 1 10.2772 -0.8281 -7.1186 37 1 6.3981 2.6908 -5.2745 38 1 5.0043 1.7006 -3.5284 39 1 5.1895 -1.3246 -0.0136 40 1 3.8375 -2.4818 0.0869 41 1 3.9158 0.3389 1.2542 42 1 3.9334 -1.1896 2.1671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290424286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:09 Heat of formation + Delta-G solvation = -119.482413 kcal Electronic energy + Delta-G solvation = -27442.575386 eV Core-core repulsion = 23250.360469 eV Total energy + Delta-G solvation = -4192.214917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.03713 -47.99837 -41.72415 -39.56338 -38.17974 -36.25426 -35.14621 -34.18876 -32.76291 -31.46316 -30.70162 -28.05751 -26.97502 -25.81255 -23.89799 -23.36740 -22.68096 -21.67350 -20.65846 -19.58484 -19.19574 -18.35043 -18.12791 -17.67549 -17.33998 -17.06266 -16.48242 -16.40798 -15.77471 -15.65282 -15.13437 -14.82156 -14.74568 -14.51351 -14.31663 -14.25166 -14.00005 -13.96269 -13.86628 -13.64046 -13.45551 -13.19661 -13.09362 -12.84662 -12.81810 -12.76125 -12.47036 -12.30450 -12.20659 -11.75530 -11.41010 -11.38628 -11.23490 -11.01935 -10.70439 -9.86292 -9.44669 -8.74640 -8.53562 -6.26871 0.85162 1.16009 1.40936 1.44868 1.55760 1.56306 2.12307 2.24852 2.69223 2.79834 2.89723 2.99563 3.25064 3.33827 3.61176 3.74075 4.01371 4.06925 4.22629 4.30576 4.39165 4.41186 4.50355 4.54747 4.62579 4.70474 4.82126 4.86490 4.94183 4.99501 5.10988 5.16543 5.18808 5.28841 5.42263 5.44976 5.63495 5.75738 6.03875 6.08282 6.16202 6.40535 6.69013 6.95412 6.97570 7.02459 7.57750 8.40479 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.036888 B = 0.002443 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.865299 B =11460.636558 C =11730.389684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 H 0.102 0.898 4 C 0.136 3.864 5 N -0.628 5.628 6 C 0.698 3.302 7 O -0.618 6.618 8 N -0.656 5.656 9 C 0.034 3.966 10 C -0.116 4.116 11 C -0.162 4.162 12 C 0.071 3.929 13 C -0.496 4.496 14 H 0.072 0.928 15 C 0.031 3.969 16 N -0.834 5.834 17 Si 0.985 3.015 18 H -0.260 1.260 19 H -0.262 1.262 20 H -0.269 1.269 21 C -0.226 4.226 22 C -0.091 4.091 23 C 0.108 3.892 24 C -0.169 4.169 25 C 0.292 3.708 26 F -0.205 7.205 27 F -0.202 7.202 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.412 0.588 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.287 0.713 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.075 -4.046 17.245 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 H 0.121 0.879 4 C 0.013 3.987 5 N -0.366 5.366 6 C 0.401 3.599 7 O -0.498 6.498 8 N -0.306 5.306 9 C -0.060 4.060 10 C -0.136 4.136 11 C -0.182 4.182 12 C 0.069 3.931 13 C -0.526 4.526 14 H 0.091 0.909 15 C -0.182 4.182 16 N -0.461 5.461 17 Si 0.806 3.194 18 H -0.184 1.184 19 H -0.186 1.186 20 H -0.194 1.194 21 C -0.246 4.246 22 C -0.111 4.111 23 C -0.014 4.014 24 C -0.208 4.208 25 C 0.256 3.744 26 F -0.186 7.186 27 F -0.183 7.183 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.251 0.749 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.382 -3.997 16.494 20.434 hybrid contribution 0.482 0.068 -0.279 0.561 sum -10.900 -3.930 16.215 19.929 Atomic orbital electron populations 1.21768 0.91329 1.03598 1.03902 1.22501 0.99451 1.01325 0.92669 0.87926 1.21522 0.77723 1.01614 0.97841 1.47314 1.06454 1.64630 1.18168 1.16017 0.81817 0.78823 0.83277 1.90902 1.73744 1.55130 1.30043 1.42078 1.03579 1.61820 1.23146 1.17020 0.93392 0.97287 0.98276 1.20463 0.94384 0.99626 0.99139 1.20941 1.00514 1.00043 0.96673 1.17988 0.90969 0.92515 0.91638 1.19778 1.19410 0.96481 1.16973 0.90941 1.26717 0.98437 0.94946 0.98107 1.69862 1.33610 1.05738 1.36902 0.85110 0.77512 0.79357 0.77393 1.18405 1.18632 1.19423 1.20823 0.95703 1.04490 1.03551 1.20366 0.98338 0.95076 0.97321 1.21852 0.99573 0.98193 0.81833 1.22948 0.90924 1.05546 1.01381 1.21150 0.94120 0.75492 0.83679 1.92996 1.89870 1.81983 1.53777 1.92983 1.91349 1.37155 1.96785 0.91340 0.91051 0.90284 0.89739 0.89262 0.74872 0.85731 0.86997 0.90290 0.88828 0.87977 0.87473 0.88728 0.87748 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.95 71.98 0.64 -1.45 16 2 C -0.14 -2.33 2.53 -10.72 -0.03 -2.35 16 3 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.14 2.85 5.50 86.36 0.48 3.32 16 5 N -0.63 -14.60 2.97 -836.89 -2.49 -17.09 16 6 C 0.70 23.52 8.02 179.06 1.44 24.95 16 7 O -0.62 -26.96 13.44 -3.98 -0.05 -27.01 16 8 N -0.66 -21.45 5.22 -316.79 -1.66 -23.11 16 9 C 0.03 1.48 6.29 38.56 0.24 1.72 16 10 C -0.12 -5.10 9.89 22.14 0.22 -4.89 16 11 C -0.16 -8.35 8.60 22.48 0.19 -8.16 16 12 C 0.07 3.93 5.55 -21.28 -0.12 3.82 16 13 C -0.50 -27.24 9.04 23.39 0.21 -27.03 16 14 H 0.07 3.87 7.87 -2.91 -0.02 3.85 16 15 C 0.03 1.58 5.26 85.24 0.45 2.03 16 16 N -0.83 -43.84 10.84 21.82 0.24 -43.60 16 17 Si 0.99 38.70 29.57 68.60 2.03 40.72 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 21 C -0.23 -11.80 9.74 22.48 0.22 -11.59 16 22 C -0.09 -4.38 8.57 22.13 0.19 -4.19 16 23 C 0.11 1.59 6.23 86.36 0.54 2.12 16 24 C -0.17 -2.10 5.62 30.67 0.17 -1.92 16 25 C 0.29 4.69 1.63 30.62 0.05 4.74 16 26 F -0.21 -3.76 16.50 44.97 0.74 -3.02 16 27 F -0.20 -3.61 15.63 44.97 0.70 -2.90 16 28 H 0.07 0.94 7.84 -2.38 -0.02 0.92 16 29 H 0.07 0.97 7.78 -2.39 -0.02 0.95 16 30 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.08 1.60 7.92 -2.39 -0.02 1.58 16 32 H 0.09 2.26 7.03 -2.39 -0.02 2.24 16 33 H 0.41 9.76 6.27 -92.71 -0.58 9.18 16 34 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.11 5.98 6.23 -2.91 -0.02 5.96 16 36 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 37 H 0.09 4.74 8.06 -2.91 -0.02 4.71 16 38 H 0.10 4.90 6.41 -2.91 -0.02 4.88 16 39 H 0.11 1.27 5.57 -2.39 -0.01 1.25 16 40 H 0.09 1.20 7.92 -2.39 -0.02 1.18 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.63 344.71 4.89 -63.74 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.48 Total: 31.15 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 4.89 Total: -18.88 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -3.91 Total: -83.80 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.05 Total: -27.01 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 1.44 Total: -5.92 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.72 kcal Total: -68.63 4.89 -63.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290424286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.742 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds