Wall clock time and date at job start Tue Mar 31 2020 15:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46996 * 2 1 4 4 C 1.52996 * 109.47098 * 240.00136 * 2 1 3 5 5 C 1.50702 * 109.47078 * 65.00014 * 4 2 1 6 6 C 1.39673 * 119.64352 * 124.72507 * 5 4 2 7 7 N 1.31342 * 120.70783 * 179.74475 * 6 5 4 8 8 C 1.33748 * 119.70464 * 0.52442 * 7 6 5 9 9 C 1.40592 * 121.09422 * 179.73377 * 8 7 6 10 10 C 1.36061 * 119.71524 * 180.02562 * 9 8 7 11 11 C 1.39402 * 120.96402 * 0.02562 * 10 9 8 12 12 C 1.36071 * 120.97277 * 359.97241 * 11 10 9 13 13 C 1.40577 * 119.71301 * 0.02562 * 12 11 10 14 14 N 1.31333 * 119.64383 * 304.99868 * 5 4 2 15 15 C 1.50702 * 109.46965 * 120.00111 * 2 1 3 16 16 O 1.21290 * 120.00031 * 77.90332 * 15 2 1 17 17 N 1.34778 * 119.99727 * 257.90354 * 15 2 1 18 18 C 1.37099 * 119.99680 * 185.36833 * 17 15 2 19 19 H 1.07997 * 120.00298 * 17.22341 * 18 17 15 20 20 C 1.38957 * 119.99665 * 197.22442 * 18 17 15 21 21 N 1.31411 * 120.00118 * 22.84170 * 20 18 17 22 22 Si 1.86804 * 119.99705 * 202.83955 * 20 18 17 23 23 H 1.48504 * 109.47247 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47091 * 120.00564 * 22 20 18 25 25 H 1.48504 * 109.46793 * 240.00496 * 22 20 18 26 26 C 1.46507 * 120.00298 * 5.08743 * 17 15 2 27 27 C 1.47194 * 109.46597 * 83.77891 * 26 17 15 28 28 N 4.06360 * 68.13647 * 54.64157 * 2 1 3 29 29 H 1.08999 * 109.46708 * 50.30165 * 1 2 3 30 30 H 1.08994 * 109.46964 * 170.30214 * 1 2 3 31 31 H 1.09001 * 109.46985 * 290.29836 * 1 2 3 32 32 H 1.09003 * 109.46946 * 184.99549 * 4 2 1 33 33 H 1.08993 * 109.47457 * 304.99829 * 4 2 1 34 34 H 1.08001 * 119.64773 * 359.97438 * 6 5 4 35 35 H 1.08005 * 120.14458 * 0.05460 * 9 8 7 36 36 H 1.07993 * 119.51993 * 180.02562 * 10 9 8 37 37 H 1.08000 * 119.51725 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.14099 * 180.02562 * 12 11 10 39 39 H 0.96997 * 119.99567 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.46744 * 203.77953 * 26 17 15 41 41 H 1.08996 * 109.47029 * 323.78048 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 6 2.6203 0.4578 -3.3887 7 7 2.2956 1.1326 -4.4677 8 6 1.0155 1.4492 -4.6914 9 6 0.6361 2.1754 -5.8338 10 6 -0.6743 2.4827 -6.0332 11 6 -1.6505 2.0883 -5.1196 12 6 -1.3209 1.3843 -4.0027 13 6 0.0228 1.0481 -3.7624 14 7 0.3779 0.3561 -2.6742 15 6 2.0324 -0.7104 1.2305 16 8 2.0270 -1.9225 1.2756 17 7 2.4876 0.0011 2.2807 18 6 3.0460 -0.6429 3.3546 19 1 3.3768 -1.6664 3.2582 20 6 3.1862 0.0214 4.5670 21 7 2.4203 1.0528 4.8435 22 14 4.4634 -0.5519 5.8038 23 1 5.1909 -1.7251 5.2564 24 1 5.4250 0.5483 6.0683 25 1 3.7890 -0.9351 7.0701 26 6 2.3913 1.4629 2.2722 27 6 1.0511 1.8689 2.7257 28 7 0.0168 2.1824 3.0757 29 1 -0.3633 0.6564 -0.7907 30 1 -0.3633 -1.0129 -0.1731 31 1 -0.3633 0.3565 0.9639 32 1 3.1264 -0.7993 -1.2056 33 1 1.6055 -1.7197 -1.2952 34 1 3.6549 0.2069 -3.2067 35 1 1.3814 2.4876 -6.5504 36 1 -0.9623 3.0403 -6.9120 37 1 -2.6838 2.3452 -5.3008 38 1 -2.0882 1.0852 -3.3040 39 1 2.5180 1.5162 5.6900 40 1 3.1434 1.8804 2.9416 41 1 2.5600 1.8323 1.2607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293532138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:53 Heat of formation + Delta-G solvation = 74.852706 kcal Electronic energy + Delta-G solvation = -26513.062086 eV Core-core repulsion = 22779.963358 eV Total energy + Delta-G solvation = -3733.098728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57235 -39.19705 -37.81697 -35.91823 -35.31472 -34.39750 -33.70735 -31.85862 -30.91229 -30.59362 -27.55325 -27.43413 -25.32410 -24.84572 -23.72651 -22.38540 -21.86093 -18.81317 -18.65422 -18.24574 -17.84374 -16.97335 -16.29254 -16.24274 -15.32027 -15.25338 -14.75660 -14.61923 -14.31101 -14.08059 -13.85015 -13.59819 -13.29115 -12.99956 -12.87210 -12.46964 -12.13776 -12.02461 -11.96557 -11.93126 -11.83744 -11.64041 -11.60900 -11.37842 -11.16246 -11.00712 -10.77405 -10.73455 -10.48192 -10.38399 -10.13571 -9.27199 -9.11509 -9.00761 -8.73437 -8.43930 -8.05312 -6.51480 -3.99529 0.07380 0.41738 1.79956 2.61753 3.07868 3.21961 3.27773 3.54281 3.74375 3.84588 3.89067 3.99668 4.00862 4.11277 4.15065 4.50075 4.60431 4.76387 4.87725 4.93189 4.94980 5.02693 5.13398 5.21606 5.28676 5.47395 5.54243 5.66766 5.70665 5.75440 5.86311 6.00857 6.10015 6.11554 6.15880 6.21898 6.42135 6.45945 6.49107 6.55941 6.80400 7.19119 7.46448 7.66739 7.89684 8.27643 8.74026 8.99899 9.19478 9.74134 10.54664 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.022583 B = 0.003038 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.573303 B = 9214.282554 C = 9717.224727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.079 0.921 4 C -0.052 4.052 5 C 0.119 3.881 6 C 0.086 3.914 7 N -0.427 5.427 8 C 0.067 3.933 9 C -0.082 4.082 10 C -0.106 4.106 11 C -0.103 4.103 12 C -0.082 4.082 13 C 0.083 3.917 14 N -0.414 5.414 15 C 0.462 3.538 16 O -0.571 6.571 17 N -0.442 5.442 18 C -0.314 4.314 19 H 0.109 0.891 20 C 0.032 3.968 21 N -0.875 5.875 22 Si 0.924 3.076 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.283 1.283 26 C 0.218 3.782 27 C 0.245 3.755 28 N -0.470 5.470 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.176 0.824 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.272 0.728 40 H 0.127 0.873 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 4.783 -19.327 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.097 0.903 4 C -0.091 4.091 5 C -0.036 4.036 6 C -0.090 4.090 7 N -0.140 5.140 8 C -0.057 4.057 9 C -0.102 4.102 10 C -0.126 4.126 11 C -0.123 4.123 12 C -0.102 4.102 13 C -0.041 4.041 14 N -0.129 5.129 15 C 0.250 3.750 16 O -0.454 6.454 17 N -0.162 5.162 18 C -0.441 4.441 19 H 0.127 0.873 20 C -0.172 4.172 21 N -0.513 5.513 22 Si 0.751 3.249 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.209 1.209 26 C 0.091 3.909 27 C -0.073 4.073 28 N -0.150 5.150 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.193 0.807 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.459 4.855 -18.752 19.526 hybrid contribution 0.936 -0.167 0.861 1.282 sum -1.523 4.688 -17.892 18.558 Atomic orbital electron populations 1.21803 0.92577 1.02968 1.01790 1.21170 0.98397 0.99571 0.92954 0.90333 1.20503 1.01870 0.98807 0.87948 1.22729 0.89391 0.94677 0.96851 1.23997 1.01537 0.93684 0.89793 1.68694 1.17489 1.09280 1.18564 1.19601 0.89879 0.99596 0.96623 1.20782 0.96697 0.97059 0.95632 1.20968 0.92583 0.99427 0.99588 1.20992 1.00161 0.97262 0.93849 1.20862 0.93929 0.97536 0.97833 1.19706 0.95270 0.97246 0.91911 1.68738 1.18312 1.09295 1.16574 1.20005 0.81706 0.87831 0.85441 1.90539 1.58159 1.13814 1.82880 1.43679 1.52688 1.03114 1.16724 1.19762 1.35735 1.00114 0.88472 0.87333 1.25279 0.97481 0.96838 0.97606 1.69910 1.34493 1.22289 1.24622 0.85892 0.80378 0.78884 0.79757 1.19070 1.20458 1.20941 1.18757 0.88402 0.83702 1.00057 1.29279 0.94479 0.92451 0.91107 1.80894 1.13503 1.09497 1.11081 0.90439 0.92313 0.93257 0.89162 0.88095 0.80659 0.84563 0.84956 0.84887 0.84262 0.91708 0.85560 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.49 37.16 0.32 -2.02 16 2 C -0.10 -1.67 2.27 -91.77 -0.21 -1.88 16 3 H 0.08 1.20 5.59 -51.93 -0.29 0.91 16 4 C -0.05 -0.74 4.80 -27.88 -0.13 -0.87 16 5 C 0.12 1.56 6.19 -82.27 -0.51 1.05 16 6 C 0.09 0.99 10.83 -17.23 -0.19 0.81 16 7 N -0.43 -5.45 10.46 -10.80 -0.11 -5.57 16 8 C 0.07 0.84 6.59 -84.80 -0.56 0.28 16 9 C -0.08 -0.80 9.98 -39.48 -0.39 -1.19 16 10 C -0.11 -0.81 9.95 -39.93 -0.40 -1.21 16 11 C -0.10 -0.83 9.95 -39.93 -0.40 -1.23 16 12 C -0.08 -0.87 9.99 -39.48 -0.39 -1.27 16 13 C 0.08 1.09 6.59 -84.80 -0.56 0.53 16 14 N -0.41 -5.88 7.28 -7.06 -0.05 -5.93 16 15 C 0.46 10.08 6.44 -10.98 -0.07 10.01 16 16 O -0.57 -14.46 16.21 5.55 0.09 -14.37 16 17 N -0.44 -10.09 2.60 -117.93 -0.31 -10.40 16 18 C -0.31 -7.94 9.29 -14.93 -0.14 -8.08 16 19 H 0.11 2.90 7.44 -52.49 -0.39 2.51 16 20 C 0.03 0.78 4.83 -17.47 -0.08 0.69 16 21 N -0.87 -21.95 9.61 55.50 0.53 -21.42 16 22 Si 0.92 19.33 29.61 -169.99 -5.03 14.29 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 26 C 0.22 4.30 4.90 -6.83 -0.03 4.27 16 27 C 0.25 5.43 12.85 -20.76 -0.27 5.17 16 28 N -0.47 -11.21 18.54 42.16 0.78 -10.43 16 29 H 0.08 1.25 5.81 -51.93 -0.30 0.95 16 30 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 31 H 0.05 0.97 7.30 -51.93 -0.38 0.60 16 32 H 0.09 1.09 7.87 -51.93 -0.41 0.69 16 33 H 0.10 1.53 8.01 -51.93 -0.42 1.12 16 34 H 0.18 1.45 7.94 -52.49 -0.42 1.04 16 35 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 40 H 0.13 2.53 6.44 -51.93 -0.33 2.20 16 41 H 0.08 1.29 5.89 -51.93 -0.31 0.98 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -32.31 350.50 -7.32 -39.64 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.49 Total: 3.84 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -4.02 Total: 5.06 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.84 Total: -53.74 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.09 Total: -14.37 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.31 -7.32 -39.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293532138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.491 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds