Wall clock time and date at job start Tue Mar 31 2020 15:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46996 * 2 1 4 4 C 1.52996 * 109.47098 * 240.00136 * 2 1 3 5 5 C 1.50702 * 109.47078 * 65.00014 * 4 2 1 6 6 C 1.39673 * 119.64352 * 124.72507 * 5 4 2 7 7 N 1.31342 * 120.70783 * 179.74475 * 6 5 4 8 8 C 1.33748 * 119.70464 * 0.52442 * 7 6 5 9 9 C 1.40592 * 121.09422 * 179.73377 * 8 7 6 10 10 C 1.36061 * 119.71524 * 180.02562 * 9 8 7 11 11 C 1.39402 * 120.96402 * 0.02562 * 10 9 8 12 12 C 1.36071 * 120.97277 * 359.97241 * 11 10 9 13 13 C 1.40577 * 119.71301 * 0.02562 * 12 11 10 14 14 N 1.31333 * 119.64383 * 304.99868 * 5 4 2 15 15 C 1.50702 * 109.46965 * 120.00111 * 2 1 3 16 16 O 1.21290 * 120.00031 * 77.90332 * 15 2 1 17 17 N 1.34778 * 119.99727 * 257.90354 * 15 2 1 18 18 C 1.37099 * 119.99680 * 185.36833 * 17 15 2 19 19 H 1.07997 * 120.00298 * 17.22341 * 18 17 15 20 20 C 1.38957 * 119.99665 * 197.22442 * 18 17 15 21 21 N 1.31411 * 120.00118 * 22.84170 * 20 18 17 22 22 Si 1.86804 * 119.99705 * 202.83955 * 20 18 17 23 23 H 1.48504 * 109.47247 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47091 * 120.00564 * 22 20 18 25 25 H 1.48504 * 109.46793 * 240.00496 * 22 20 18 26 26 C 1.46507 * 120.00298 * 5.08743 * 17 15 2 27 27 C 1.47194 * 109.46597 * 83.77891 * 26 17 15 28 28 N 4.06360 * 68.13647 * 54.64157 * 2 1 3 29 29 H 1.08999 * 109.46708 * 50.30165 * 1 2 3 30 30 H 1.08994 * 109.46964 * 170.30214 * 1 2 3 31 31 H 1.09001 * 109.46985 * 290.29836 * 1 2 3 32 32 H 1.09003 * 109.46946 * 184.99549 * 4 2 1 33 33 H 1.08993 * 109.47457 * 304.99829 * 4 2 1 34 34 H 1.08001 * 119.64773 * 359.97438 * 6 5 4 35 35 H 1.08005 * 120.14458 * 0.05460 * 9 8 7 36 36 H 1.07993 * 119.51993 * 180.02562 * 10 9 8 37 37 H 1.08000 * 119.51725 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.14099 * 180.02562 * 12 11 10 39 39 H 0.96997 * 119.99567 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.46744 * 203.77953 * 26 17 15 41 41 H 1.08996 * 109.47029 * 323.78048 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 6 2.6203 0.4578 -3.3887 7 7 2.2956 1.1326 -4.4677 8 6 1.0155 1.4492 -4.6914 9 6 0.6361 2.1754 -5.8338 10 6 -0.6743 2.4827 -6.0332 11 6 -1.6505 2.0883 -5.1196 12 6 -1.3209 1.3843 -4.0027 13 6 0.0228 1.0481 -3.7624 14 7 0.3779 0.3561 -2.6742 15 6 2.0324 -0.7104 1.2305 16 8 2.0270 -1.9225 1.2756 17 7 2.4876 0.0011 2.2807 18 6 3.0460 -0.6429 3.3546 19 1 3.3768 -1.6664 3.2582 20 6 3.1862 0.0214 4.5670 21 7 2.4203 1.0528 4.8435 22 14 4.4634 -0.5519 5.8038 23 1 5.1909 -1.7251 5.2564 24 1 5.4250 0.5483 6.0683 25 1 3.7890 -0.9351 7.0701 26 6 2.3913 1.4629 2.2722 27 6 1.0511 1.8689 2.7257 28 7 0.0168 2.1824 3.0757 29 1 -0.3633 0.6564 -0.7907 30 1 -0.3633 -1.0129 -0.1731 31 1 -0.3633 0.3565 0.9639 32 1 3.1264 -0.7993 -1.2056 33 1 1.6055 -1.7197 -1.2952 34 1 3.6549 0.2069 -3.2067 35 1 1.3814 2.4876 -6.5504 36 1 -0.9623 3.0403 -6.9120 37 1 -2.6838 2.3452 -5.3008 38 1 -2.0882 1.0852 -3.3040 39 1 2.5180 1.5162 5.6900 40 1 3.1434 1.8804 2.9416 41 1 2.5600 1.8323 1.2607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293532138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:52 Heat of formation + Delta-G solvation = 55.602934 kcal Electronic energy + Delta-G solvation = -26513.896819 eV Core-core repulsion = 22779.963358 eV Total energy + Delta-G solvation = -3733.933461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.133 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.44370 -40.85129 -38.66811 -37.63681 -36.51306 -36.07762 -34.93931 -33.65097 -31.88051 -31.43398 -29.21719 -28.56713 -27.08406 -25.72769 -24.91775 -23.24434 -23.09754 -20.38630 -19.69888 -19.45391 -19.10365 -18.42560 -17.98726 -17.24891 -16.69598 -16.17923 -16.01187 -15.83584 -15.55798 -15.24873 -15.08585 -14.80389 -14.74261 -14.63052 -14.14797 -13.76840 -13.74433 -13.48763 -13.39897 -13.00154 -12.91211 -12.80570 -12.71656 -12.65216 -12.59235 -12.39927 -12.32589 -12.13008 -12.05268 -12.04058 -11.66048 -11.10832 -10.38771 -9.93333 -9.91420 -9.79217 -9.50378 -8.39191 -5.93951 -0.73245 -0.41029 0.96602 1.39331 1.50051 1.62521 1.80153 1.86091 2.06061 2.25240 2.36772 2.88538 3.00624 3.03918 3.15069 3.21083 3.31600 3.54696 3.68613 3.84692 3.91262 4.02450 4.11509 4.20509 4.26256 4.32503 4.38985 4.47168 4.70118 4.81957 4.84277 4.86115 4.93638 4.97483 5.07240 5.17281 5.22489 5.25225 5.39345 5.42489 5.50958 5.80904 6.05287 6.31556 6.41329 6.76981 6.98253 7.14014 7.37081 7.94415 8.64963 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.022583 B = 0.003038 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.573303 B = 9214.282554 C = 9717.224727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.088 4.088 3 H 0.100 0.900 4 C -0.043 4.043 5 C 0.108 3.892 6 C 0.086 3.914 7 N -0.440 5.440 8 C 0.049 3.951 9 C -0.096 4.096 10 C -0.090 4.090 11 C -0.088 4.088 12 C -0.106 4.106 13 C 0.058 3.942 14 N -0.438 5.438 15 C 0.459 3.541 16 O -0.613 6.613 17 N -0.454 5.454 18 C -0.340 4.340 19 H 0.085 0.915 20 C 0.004 3.996 21 N -0.893 5.893 22 Si 0.986 3.014 23 H -0.268 1.268 24 H -0.263 1.263 25 H -0.292 1.292 26 C 0.219 3.781 27 C 0.256 3.744 28 N -0.505 5.505 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.021 0.979 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.207 0.793 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.140 0.860 39 H 0.274 0.726 40 H 0.126 0.874 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 6.468 -21.515 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.110 4.110 3 H 0.118 0.882 4 C -0.082 4.082 5 C -0.047 4.047 6 C -0.089 4.089 7 N -0.153 5.153 8 C -0.074 4.074 9 C -0.116 4.116 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.125 4.125 13 C -0.066 4.066 14 N -0.153 5.153 15 C 0.249 3.751 16 O -0.498 6.498 17 N -0.173 5.173 18 C -0.467 4.467 19 H 0.103 0.897 20 C -0.198 4.198 21 N -0.532 5.532 22 Si 0.810 3.190 23 H -0.193 1.193 24 H -0.187 1.187 25 H -0.219 1.219 26 C 0.092 3.908 27 C -0.062 4.062 28 N -0.185 5.185 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.223 0.777 35 H 0.169 0.831 36 H 0.189 0.811 37 H 0.184 0.816 38 H 0.157 0.843 39 H 0.084 0.916 40 H 0.144 0.856 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.008 6.566 -20.953 22.049 hybrid contribution 0.660 -0.681 1.435 1.720 sum -1.348 5.885 -19.518 20.431 Atomic orbital electron populations 1.21703 0.93091 1.02464 1.00682 1.21107 0.97649 1.00384 0.91839 0.88199 1.20369 1.02992 0.97707 0.87101 1.22549 0.89707 0.95463 0.96964 1.24359 1.02492 0.92996 0.89037 1.68753 1.17802 1.09870 1.18919 1.20010 0.89801 1.00120 0.97513 1.21086 0.98166 0.97132 0.95184 1.21443 0.91521 0.97826 1.00162 1.21433 1.02007 0.94971 0.92343 1.21058 0.93114 0.99025 0.99322 1.20030 0.96515 0.98013 0.92049 1.68600 1.19027 1.09909 1.17752 1.20837 0.80336 0.87540 0.86386 1.90508 1.59536 1.15878 1.83844 1.43853 1.52646 1.04428 1.16387 1.19690 1.37243 0.99822 0.89961 0.89691 1.25912 0.98435 0.96788 0.98644 1.69990 1.35142 1.22981 1.25058 0.84988 0.78272 0.78767 0.76939 1.19264 1.18719 1.21852 1.19079 0.86935 0.81981 1.02806 1.29781 0.94723 0.91537 0.90172 1.80886 1.14650 1.10651 1.12344 0.88853 0.93451 0.95941 0.86984 0.89801 0.77686 0.83086 0.81106 0.81559 0.84265 0.91624 0.85628 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 8.49 71.98 0.61 -3.71 16 2 C -0.09 -2.94 2.27 -11.54 -0.03 -2.97 16 3 H 0.10 2.88 5.59 -2.38 -0.01 2.86 16 4 C -0.04 -1.19 4.80 29.85 0.14 -1.04 16 5 C 0.11 2.77 6.19 42.98 0.27 3.04 16 6 C 0.09 1.88 10.83 85.11 0.92 2.80 16 7 N -0.44 -10.63 10.46 -188.09 -1.97 -12.60 16 8 C 0.05 1.17 6.59 40.30 0.27 1.44 16 9 C -0.10 -1.63 9.98 22.34 0.22 -1.40 16 10 C -0.09 -1.04 9.95 22.04 0.22 -0.82 16 11 C -0.09 -1.14 9.95 22.05 0.22 -0.92 16 12 C -0.11 -2.11 9.99 22.34 0.22 -1.89 16 13 C 0.06 1.48 6.59 40.29 0.27 1.74 16 14 N -0.44 -12.31 7.28 -176.25 -1.28 -13.59 16 15 C 0.46 20.28 6.44 87.66 0.56 20.84 16 16 O -0.61 -31.96 16.21 -3.06 -0.05 -32.01 16 17 N -0.45 -20.81 2.60 -645.41 -1.68 -22.49 16 18 C -0.34 -17.47 9.29 84.04 0.78 -16.69 16 19 H 0.09 4.70 7.44 -2.91 -0.02 4.68 16 20 C 0.00 0.21 4.83 84.93 0.41 0.62 16 21 N -0.89 -44.72 9.61 21.67 0.21 -44.52 16 22 Si 0.99 39.62 29.61 68.60 2.03 41.65 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 26 C 0.22 8.40 4.90 84.57 0.41 8.82 16 27 C 0.26 11.27 12.85 89.44 1.15 12.42 16 28 N -0.50 -24.22 18.54 20.00 0.37 -23.85 16 29 H 0.09 3.03 5.81 -2.39 -0.01 3.02 16 30 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 31 H 0.02 0.89 7.30 -2.39 -0.02 0.87 16 32 H 0.11 2.56 7.87 -2.39 -0.02 2.55 16 33 H 0.08 2.61 8.01 -2.39 -0.02 2.59 16 34 H 0.21 2.93 7.94 -2.91 -0.02 2.90 16 35 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 38 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 39 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 40 H 0.13 4.91 6.44 -2.39 -0.02 4.90 16 41 H 0.13 3.76 5.89 -2.39 -0.01 3.74 16 Total: -1.00 -72.56 350.50 5.36 -67.20 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.08 Total: 17.92 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 6.65 Total: 22.28 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -4.35 Total: -117.04 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.05 Total: -32.01 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -72.56 5.36 -67.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293532138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.804 kcal (2) G-P(sol) polarization free energy of solvation -72.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds