Wall clock time and date at job start Tue Mar 31 2020 14:40:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08999 * 109.45892 * 2 1
4 4 C 1.53039 * 109.45082 * 119.96327 * 2 1 3
5 5 C 1.52754 * 109.38777 * 181.25233 * 4 2 1
6 6 N 1.46924 * 109.00834 * 305.59600 * 5 4 2
7 7 C 1.34784 * 120.62667 * 233.58258 * 6 5 4
8 8 O 1.21585 * 119.99869 * 186.50282 * 7 6 5
9 9 N 1.34777 * 119.99775 * 6.49314 * 7 6 5
10 10 C 1.39249 * 119.99498 * 189.49957 * 9 7 6
11 11 C 1.39480 * 119.82627 * 151.11996 * 10 9 7
12 12 C 1.36374 * 120.16530 * 180.25802 * 11 10 9
13 13 C 1.40872 * 119.82672 * 359.49496 * 12 11 10
14 14 C 1.41157 * 120.16433 * 180.23427 * 13 12 11
15 15 H 1.07997 * 120.00094 * 216.36266 * 14 13 12
16 16 C 1.39896 * 119.99881 * 36.35856 * 14 13 12
17 17 N 1.30876 * 119.99990 * 17.18678 * 16 14 13
18 18 Si 1.86804 * 119.99908 * 197.18421 * 16 14 13
19 19 H 1.48496 * 109.47173 * 60.00113 * 18 16 14
20 20 H 1.48494 * 109.47004 * 180.02562 * 18 16 14
21 21 H 1.48506 * 109.47095 * 300.00315 * 18 16 14
22 22 C 1.40866 * 119.67108 * 0.52385 * 13 12 11
23 23 C 1.36371 * 119.83227 * 359.73184 * 22 13 12
24 24 C 1.46925 * 118.74538 * 53.30131 * 6 5 4
25 25 C 1.53039 * 109.46014 * 240.02403 * 2 1 3
26 26 F 1.39911 * 109.49545 * 58.67881 * 25 2 1
27 27 F 1.39898 * 109.52822 * 298.59690 * 25 2 1
28 28 H 1.09007 * 109.47092 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47402 * 299.97421 * 1 2 3
30 30 H 1.09001 * 109.47283 * 59.97266 * 1 2 3
31 31 H 1.09001 * 109.49870 * 301.33541 * 4 2 1
32 32 H 1.09006 * 109.49529 * 61.39694 * 4 2 1
33 33 H 1.08991 * 109.51455 * 185.70772 * 5 4 2
34 34 H 1.09004 * 109.43112 * 65.42356 * 5 4 2
35 35 H 0.96994 * 120.00275 * 9.50556 * 9 7 6
36 36 H 1.08004 * 119.92068 * 359.97438 * 11 10 9
37 37 H 1.07998 * 120.08767 * 179.74480 * 12 11 10
38 38 H 0.97001 * 120.00075 * 179.97438 * 17 16 14
39 39 H 1.08000 * 120.08562 * 179.70913 * 22 13 12
40 40 H 1.07999 * 119.92126 * 179.97438 * 23 22 13
41 41 H 1.09000 * 109.58073 * 66.43193 * 24 6 5
42 42 H 1.08997 * 109.59043 * 186.71733 * 24 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0396 -0.7207 1.2502
5 6 3.5668 -0.6927 1.2646
6 7 4.0676 -1.2492 0.0004
7 6 4.9610 -2.2584 0.0005
8 8 5.4571 -2.6314 -1.0450
9 7 5.3045 -2.8541 1.1597
10 6 6.3653 -3.7556 1.1915
11 6 7.1086 -3.9113 2.3614
12 6 8.1522 -4.7884 2.3986
13 6 8.4719 -5.5460 1.2548
14 6 9.5474 -6.4596 1.2869
15 1 10.1680 -6.5941 0.4133
16 6 9.8097 -7.1907 2.4505
17 7 8.8932 -7.2936 3.3791
18 14 11.4678 -8.0201 2.6786
19 1 12.5421 -6.9954 2.6491
20 1 11.4925 -8.7263 3.9846
21 1 11.6868 -8.9985 1.5830
22 6 7.7167 -5.3829 0.0769
23 6 6.6793 -4.4980 0.0532
24 6 3.5714 -0.6890 -1.2640
25 6 2.0399 -0.7210 -1.2499
26 9 1.5490 -0.0791 -2.3921
27 9 1.6006 -2.0491 -1.2356
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3634 0.5134 0.8902
30 1 -0.3634 0.5143 -0.8897
31 1 1.6569 -0.2206 2.1399
32 1 1.6969 -1.7554 1.2387
33 1 3.9342 -1.2910 2.0982
34 1 3.9096 0.3365 1.3718
35 1 4.8129 -2.6548 1.9717
36 1 6.8601 -3.3324 3.2386
37 1 8.7295 -4.9050 3.3039
38 1 9.0749 -7.8008 4.1857
39 1 7.9589 -5.9568 -0.8054
40 1 6.0996 -4.3715 -0.8492
41 1 3.9145 0.3404 -1.3671
42 1 3.9437 -1.2836 -2.0982
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000334552791.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:40:57
Heat of formation + Delta-G solvation = -99.782702 kcal
Electronic energy + Delta-G solvation = -27555.057680 eV
Core-core repulsion = 23363.697006 eV
Total energy + Delta-G solvation = -4191.360674 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.139 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-49.16834 -47.13393 -40.44724 -38.13697 -36.99252 -34.55973 -34.13182 -32.91798
-30.81945 -29.57277 -29.24323 -28.16995 -25.02435 -23.75277 -23.66774 -21.72797
-21.18819 -20.56541 -19.48876 -18.28920 -17.32826 -17.24130 -17.05690 -16.92054
-16.21614 -15.51777 -15.12471 -14.94114 -14.61219 -14.16037 -13.92518 -13.84316
-13.63704 -13.56543 -13.42699 -13.12734 -12.95118 -12.81960 -12.61730 -12.29103
-12.12999 -12.04971 -11.86877 -11.58026 -11.49489 -11.24979 -11.11729 -10.91538
-10.79024 -10.56370 -10.21033 -9.78190 -9.49117 -9.04223 -8.84284 -8.77292
-7.54481 -6.87735 -6.67703 -4.26685 2.47814 2.72637 3.06936 3.10747
3.12970 3.15802 3.38069 3.54633 3.77139 3.96392 4.00266 4.06850
4.16728 4.42623 4.68545 4.73057 4.81739 4.91245 5.05408 5.14518
5.21831 5.33500 5.38046 5.44018 5.47248 5.65921 5.71824 5.82241
6.12620 6.20816 6.38834 6.70664 6.77256 7.01100 7.11616 7.22751
7.30818 7.63444 7.76985 7.89425 8.07980 8.30920 8.37159 8.61862
8.84861 8.93277 9.02900 10.29621
Molecular weight = 324.14amu
Principal moments of inertia in cm(-1)
A = 0.035414 B = 0.002529 C = 0.002447
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 790.468932 B =11067.902007 C =11441.323929
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.128 4.128
3 H 0.102 0.898
4 C -0.133 4.133
5 C 0.107 3.893
6 N -0.631 5.631
7 C 0.704 3.296
8 O -0.569 6.569
9 N -0.661 5.661
10 C 0.017 3.983
11 C -0.119 4.119
12 C -0.143 4.143
13 C 0.112 3.888
14 C -0.475 4.475
15 H 0.077 0.923
16 C 0.079 3.921
17 N -0.804 5.804
18 Si 0.905 3.095
19 H -0.265 1.265
20 H -0.280 1.280
21 H -0.266 1.266
22 C -0.204 4.204
23 C -0.092 4.092
24 C 0.098 3.902
25 C 0.277 3.723
26 F -0.196 7.196
27 F -0.191 7.191
28 H 0.064 0.936
29 H 0.068 0.932
30 H 0.064 0.936
31 H 0.091 0.909
32 H 0.080 0.920
33 H 0.088 0.912
34 H 0.075 0.925
35 H 0.392 0.608
36 H 0.090 0.910
37 H 0.107 0.893
38 H 0.279 0.721
39 H 0.096 0.904
40 H 0.125 0.875
41 H 0.095 0.905
42 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.583 15.496 -0.529 21.285
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.147 4.147
3 H 0.120 0.880
4 C -0.172 4.172
5 C -0.017 4.017
6 N -0.370 5.370
7 C 0.407 3.593
8 O -0.446 6.446
9 N -0.307 5.307
10 C -0.076 4.076
11 C -0.139 4.139
12 C -0.163 4.163
13 C 0.110 3.890
14 C -0.505 4.505
15 H 0.095 0.905
16 C -0.137 4.137
17 N -0.430 5.430
18 Si 0.729 3.271
19 H -0.190 1.190
20 H -0.205 1.205
21 H -0.191 1.191
22 C -0.224 4.224
23 C -0.112 4.112
24 C -0.028 4.028
25 C 0.239 3.761
26 F -0.177 7.177
27 F -0.172 7.172
28 H 0.083 0.917
29 H 0.087 0.913
30 H 0.083 0.917
31 H 0.110 0.890
32 H 0.099 0.901
33 H 0.106 0.894
34 H 0.094 0.906
35 H 0.228 0.772
36 H 0.108 0.892
37 H 0.125 0.875
38 H 0.090 0.910
39 H 0.115 0.885
40 H 0.142 0.858
41 H 0.113 0.887
42 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -14.255 15.093 -1.081 20.789
hybrid contribution 0.254 -0.376 0.618 0.767
sum -14.001 14.717 -0.463 20.318
Atomic orbital electron populations
1.21826 0.92948 1.03215 1.02945 1.22116 0.98400 1.00917 0.93297
0.88025 1.21984 0.95517 1.02438 0.97227 1.21649 0.93662 0.99991
0.86367 1.47116 1.46915 1.37307 1.05688 1.15819 0.79561 0.79072
0.84898 1.90849 1.56691 1.65948 1.31065 1.42213 1.34771 1.44405
1.09336 1.17081 0.94448 0.99038 0.96998 1.20126 0.97138 1.01360
0.95287 1.20676 0.98759 0.97284 0.99611 1.17640 0.90843 0.89932
0.90627 1.19395 1.12393 1.20264 0.98463 0.90452 1.25804 0.97450
0.95532 0.94956 1.69820 1.32560 1.33029 1.07603 0.86436 0.82864
0.79652 0.78116 1.18952 1.20514 1.19120 1.20856 0.98794 1.03385
0.99408 1.20841 0.98479 0.94612 0.97276 1.22196 0.89211 1.02014
0.89376 1.21528 0.94054 0.76303 0.84187 1.93002 1.89417 1.81713
1.53571 1.93024 1.91074 1.36391 1.96691 0.91708 0.91277 0.91683
0.89017 0.90129 0.89382 0.90638 0.77176 0.89201 0.87471 0.91029
0.88543 0.85753 0.88729 0.86460
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.03 8.95 37.16 0.33 -0.70 16
2 C -0.13 -0.95 2.34 -90.58 -0.21 -1.16 16
3 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
4 C -0.13 -0.93 5.23 -26.84 -0.14 -1.07 16
5 C 0.11 0.89 6.39 -3.94 -0.03 0.86 16
6 N -0.63 -7.96 2.96 -178.77 -0.53 -8.48 16
7 C 0.70 12.38 8.18 -86.91 -0.71 11.67 16
8 O -0.57 -12.28 12.73 5.29 0.07 -12.21 16
9 N -0.66 -11.58 5.18 -14.10 -0.07 -11.65 16
10 C 0.02 0.37 6.43 -83.57 -0.54 -0.16 16
11 C -0.12 -2.65 9.88 -39.79 -0.39 -3.04 16
12 C -0.14 -3.64 8.61 -39.26 -0.34 -3.98 16
13 C 0.11 3.02 5.41 -106.80 -0.58 2.44 16
14 C -0.47 -12.77 8.97 -37.85 -0.34 -13.11 16
15 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16
16 C 0.08 2.01 5.07 -17.34 -0.09 1.93 16
17 N -0.80 -21.03 11.77 55.55 0.65 -20.38 16
18 Si 0.90 18.96 29.59 -169.99 -5.03 13.93 16
19 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16
20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16
21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
22 C -0.20 -5.26 9.74 -39.26 -0.38 -5.64 16
23 C -0.09 -2.25 8.73 -39.79 -0.35 -2.59 16
24 C 0.10 1.11 5.90 -3.71 -0.02 1.09 16
25 C 0.28 2.93 1.67 -26.61 -0.04 2.89 16
26 F -0.20 -2.17 16.50 2.25 0.04 -2.14 16
27 F -0.19 -2.58 16.00 2.25 0.04 -2.54 16
28 H 0.06 0.51 7.84 -51.92 -0.41 0.10 16
29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16
30 H 0.06 0.45 7.77 -51.93 -0.40 0.05 16
31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16
32 H 0.08 0.70 7.74 -51.93 -0.40 0.29 16
33 H 0.09 0.69 5.63 -51.93 -0.29 0.40 16
34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
35 H 0.39 5.42 6.38 -40.82 -0.26 5.16 16
36 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16
37 H 0.11 2.77 7.04 -52.49 -0.37 2.40 16
38 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16
39 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16
40 H 0.12 3.06 5.55 -52.49 -0.29 2.77 16
41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16
42 H 0.12 1.61 7.05 -51.93 -0.37 1.24 16
LS Contribution 345.59 15.07 5.21 5.21
Total: -1.00 -31.48 345.59 -8.76 -40.23
By element:
Atomic # 1 Polarization: 13.91 SS G_CDS: -5.30 Total: 8.61 kcal
Atomic # 6 Polarization: -6.75 SS G_CDS: -3.83 Total: -10.58 kcal
Atomic # 7 Polarization: -40.57 SS G_CDS: 0.05 Total: -40.52 kcal
Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.21 kcal
Atomic # 9 Polarization: -4.75 SS G_CDS: 0.07 Total: -4.68 kcal
Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -31.48 -8.76 -40.23 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000334552791.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.550 kcal
(2) G-P(sol) polarization free energy of solvation -31.476 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.025 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.783 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds