Wall clock time and date at job start Tue Mar 31 2020 14:40:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08999 * 109.45892 * 2 1
4 4 C 1.53039 * 109.45082 * 119.96327 * 2 1 3
5 5 C 1.52754 * 109.38777 * 181.25233 * 4 2 1
6 6 N 1.46924 * 109.00834 * 305.59600 * 5 4 2
7 7 C 1.34784 * 120.62667 * 233.58258 * 6 5 4
8 8 O 1.21585 * 119.99869 * 186.50282 * 7 6 5
9 9 N 1.34777 * 119.99775 * 6.49314 * 7 6 5
10 10 C 1.39249 * 119.99498 * 189.49957 * 9 7 6
11 11 C 1.39480 * 119.82627 * 151.11996 * 10 9 7
12 12 C 1.36374 * 120.16530 * 180.25802 * 11 10 9
13 13 C 1.40872 * 119.82672 * 359.49496 * 12 11 10
14 14 C 1.41157 * 120.16433 * 180.23427 * 13 12 11
15 15 H 1.07997 * 120.00094 * 216.36266 * 14 13 12
16 16 C 1.39896 * 119.99881 * 36.35856 * 14 13 12
17 17 N 1.30876 * 119.99990 * 17.18678 * 16 14 13
18 18 Si 1.86804 * 119.99908 * 197.18421 * 16 14 13
19 19 H 1.48496 * 109.47173 * 60.00113 * 18 16 14
20 20 H 1.48494 * 109.47004 * 180.02562 * 18 16 14
21 21 H 1.48506 * 109.47095 * 300.00315 * 18 16 14
22 22 C 1.40866 * 119.67108 * 0.52385 * 13 12 11
23 23 C 1.36371 * 119.83227 * 359.73184 * 22 13 12
24 24 C 1.46925 * 118.74538 * 53.30131 * 6 5 4
25 25 C 1.53039 * 109.46014 * 240.02403 * 2 1 3
26 26 F 1.39911 * 109.49545 * 58.67881 * 25 2 1
27 27 F 1.39898 * 109.52822 * 298.59690 * 25 2 1
28 28 H 1.09007 * 109.47092 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47402 * 299.97421 * 1 2 3
30 30 H 1.09001 * 109.47283 * 59.97266 * 1 2 3
31 31 H 1.09001 * 109.49870 * 301.33541 * 4 2 1
32 32 H 1.09006 * 109.49529 * 61.39694 * 4 2 1
33 33 H 1.08991 * 109.51455 * 185.70772 * 5 4 2
34 34 H 1.09004 * 109.43112 * 65.42356 * 5 4 2
35 35 H 0.96994 * 120.00275 * 9.50556 * 9 7 6
36 36 H 1.08004 * 119.92068 * 359.97438 * 11 10 9
37 37 H 1.07998 * 120.08767 * 179.74480 * 12 11 10
38 38 H 0.97001 * 120.00075 * 179.97438 * 17 16 14
39 39 H 1.08000 * 120.08562 * 179.70913 * 22 13 12
40 40 H 1.07999 * 119.92126 * 179.97438 * 23 22 13
41 41 H 1.09000 * 109.58073 * 66.43193 * 24 6 5
42 42 H 1.08997 * 109.59043 * 186.71733 * 24 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0396 -0.7207 1.2502
5 6 3.5668 -0.6927 1.2646
6 7 4.0676 -1.2492 0.0004
7 6 4.9610 -2.2584 0.0005
8 8 5.4571 -2.6314 -1.0450
9 7 5.3045 -2.8541 1.1597
10 6 6.3653 -3.7556 1.1915
11 6 7.1086 -3.9113 2.3614
12 6 8.1522 -4.7884 2.3986
13 6 8.4719 -5.5460 1.2548
14 6 9.5474 -6.4596 1.2869
15 1 10.1680 -6.5941 0.4133
16 6 9.8097 -7.1907 2.4505
17 7 8.8932 -7.2936 3.3791
18 14 11.4678 -8.0201 2.6786
19 1 12.5421 -6.9954 2.6491
20 1 11.4925 -8.7263 3.9846
21 1 11.6868 -8.9985 1.5830
22 6 7.7167 -5.3829 0.0769
23 6 6.6793 -4.4980 0.0532
24 6 3.5714 -0.6890 -1.2640
25 6 2.0399 -0.7210 -1.2499
26 9 1.5490 -0.0791 -2.3921
27 9 1.6006 -2.0491 -1.2356
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3634 0.5134 0.8902
30 1 -0.3634 0.5143 -0.8897
31 1 1.6569 -0.2206 2.1399
32 1 1.6969 -1.7554 1.2387
33 1 3.9342 -1.2910 2.0982
34 1 3.9096 0.3365 1.3718
35 1 4.8129 -2.6548 1.9717
36 1 6.8601 -3.3324 3.2386
37 1 8.7295 -4.9050 3.3039
38 1 9.0749 -7.8008 4.1857
39 1 7.9589 -5.9568 -0.8054
40 1 6.0996 -4.3715 -0.8492
41 1 3.9145 0.3404 -1.3671
42 1 3.9437 -1.2836 -2.0982
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000334552791.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:40:56
Heat of formation + Delta-G solvation = -117.540339 kcal
Electronic energy + Delta-G solvation = -27555.827709 eV
Core-core repulsion = 23363.697006 eV
Total energy + Delta-G solvation = -4192.130703 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.139 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-50.06508 -48.05684 -41.77680 -39.57092 -38.32391 -36.24059 -35.14973 -34.57416
-31.78505 -31.40689 -30.76914 -29.27310 -26.72256 -24.77077 -24.41544 -23.37551
-22.72300 -21.82176 -20.71147 -19.56788 -19.14878 -18.38068 -18.12763 -17.71662
-17.44259 -17.01574 -16.67916 -16.23160 -15.70222 -15.59456 -15.15200 -14.89593
-14.58849 -14.52696 -14.42916 -14.37197 -14.32099 -14.03343 -13.79009 -13.75918
-13.47201 -13.35596 -13.05033 -12.81408 -12.74866 -12.62668 -12.37948 -12.17949
-11.98610 -11.76236 -11.58636 -11.53533 -11.24990 -10.85392 -10.55042 -9.87387
-9.47303 -8.74191 -8.55170 -6.26217 0.84591 1.12155 1.39760 1.40814
1.50044 1.52898 2.03313 2.25725 2.66599 2.78584 2.84378 3.02293
3.29930 3.36950 3.68908 3.77278 4.00446 4.18199 4.30132 4.32239
4.39280 4.48162 4.51622 4.56251 4.62726 4.80563 4.87431 4.88876
4.94414 5.09764 5.13573 5.20227 5.28455 5.29682 5.37768 5.43245
5.54458 5.75313 6.00322 6.02797 6.12062 6.41956 6.65755 6.92059
6.96617 7.01688 7.50362 8.42274
Molecular weight = 324.14amu
Principal moments of inertia in cm(-1)
A = 0.035414 B = 0.002529 C = 0.002447
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 790.468932 B =11067.902007 C =11441.323929
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.122 4.122
3 H 0.130 0.870
4 C -0.127 4.127
5 C 0.097 3.903
6 N -0.621 5.621
7 C 0.699 3.301
8 O -0.616 6.616
9 N -0.653 5.653
10 C 0.037 3.963
11 C -0.112 4.112
12 C -0.157 4.157
13 C 0.081 3.919
14 C -0.514 4.514
15 H 0.070 0.930
16 C 0.041 3.959
17 N -0.834 5.834
18 Si 0.978 3.022
19 H -0.261 1.261
20 H -0.266 1.266
21 H -0.264 1.264
22 C -0.223 4.223
23 C -0.107 4.107
24 C 0.093 3.907
25 C 0.270 3.730
26 F -0.200 7.200
27 F -0.213 7.213
28 H 0.047 0.953
29 H 0.094 0.906
30 H 0.060 0.940
31 H 0.129 0.871
32 H 0.060 0.940
33 H 0.095 0.905
34 H 0.108 0.892
35 H 0.414 0.586
36 H 0.131 0.869
37 H 0.098 0.902
38 H 0.287 0.713
39 H 0.090 0.910
40 H 0.119 0.881
41 H 0.128 0.872
42 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.655 17.907 1.579 23.838
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.141 4.141
3 H 0.148 0.852
4 C -0.165 4.165
5 C -0.024 4.024
6 N -0.358 5.358
7 C 0.402 3.598
8 O -0.496 6.496
9 N -0.302 5.302
10 C -0.057 4.057
11 C -0.133 4.133
12 C -0.177 4.177
13 C 0.078 3.922
14 C -0.545 4.545
15 H 0.088 0.912
16 C -0.173 4.173
17 N -0.461 5.461
18 Si 0.799 3.201
19 H -0.185 1.185
20 H -0.191 1.191
21 H -0.189 1.189
22 C -0.243 4.243
23 C -0.127 4.127
24 C -0.032 4.032
25 C 0.233 3.767
26 F -0.181 7.181
27 F -0.195 7.195
28 H 0.066 0.934
29 H 0.113 0.887
30 H 0.079 0.921
31 H 0.148 0.852
32 H 0.079 0.921
33 H 0.113 0.887
34 H 0.126 0.874
35 H 0.253 0.747
36 H 0.149 0.851
37 H 0.116 0.884
38 H 0.098 0.902
39 H 0.109 0.891
40 H 0.136 0.864
41 H 0.145 0.855
42 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -15.402 17.563 1.053 23.384
hybrid contribution 0.399 -0.974 -0.126 1.060
sum -15.003 16.590 0.928 22.387
Atomic orbital electron populations
1.21828 0.92436 1.02490 1.04024 1.22205 0.98777 1.01794 0.91279
0.85163 1.21991 0.94274 1.01772 0.98454 1.22083 0.94674 1.01558
0.84089 1.47099 1.45318 1.35522 1.07901 1.16016 0.80123 0.79772
0.83937 1.90823 1.58644 1.67524 1.32632 1.41973 1.33943 1.43676
1.10572 1.17102 0.94630 0.98093 0.95880 1.20402 0.95699 1.00525
0.96635 1.20697 1.00017 0.98194 0.98811 1.17934 0.91676 0.90988
0.91561 1.19596 1.13436 1.21949 0.99480 0.91199 1.26589 1.00970
0.95667 0.94093 1.69858 1.34246 1.33835 1.08194 0.85328 0.77794
0.78540 0.78448 1.18525 1.19071 1.18895 1.20952 0.99723 1.04304
0.99333 1.20926 0.98372 0.95187 0.98227 1.22341 0.90024 1.02948
0.87869 1.21887 0.93437 0.75720 0.85662 1.92991 1.89351 1.81598
1.54199 1.92982 1.91263 1.38354 1.96853 0.93359 0.88725 0.92096
0.85244 0.92144 0.88697 0.87364 0.74670 0.85077 0.88353 0.90247
0.89134 0.86367 0.85463 0.89632
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.59 8.95 71.98 0.64 -0.94 16
2 C -0.12 -1.36 2.34 -10.77 -0.03 -1.39 16
3 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16
4 C -0.13 -1.24 5.23 30.53 0.16 -1.08 16
5 C 0.10 1.21 6.39 86.22 0.55 1.76 16
6 N -0.62 -14.38 2.96 -837.76 -2.48 -16.86 16
7 C 0.70 24.06 8.18 179.05 1.46 25.52 16
8 O -0.62 -27.21 12.73 -3.98 -0.05 -27.26 16
9 N -0.65 -21.81 5.18 -316.77 -1.64 -23.45 16
10 C 0.04 1.62 6.43 38.56 0.25 1.87 16
11 C -0.11 -4.89 9.88 22.13 0.22 -4.67 16
12 C -0.16 -8.09 8.61 22.48 0.19 -7.90 16
13 C 0.08 4.52 5.41 -21.27 -0.12 4.41 16
14 C -0.51 -28.80 8.97 23.39 0.21 -28.59 16
15 H 0.07 3.84 7.90 -2.91 -0.02 3.82 16
16 C 0.04 2.10 5.07 85.24 0.43 2.53 16
17 N -0.83 -44.25 11.77 21.82 0.26 -43.99 16
18 Si 0.98 39.25 29.59 68.60 2.03 41.28 16
19 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16
20 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16
21 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16
22 C -0.22 -12.06 9.74 22.48 0.22 -11.84 16
23 C -0.11 -5.38 8.73 22.13 0.19 -5.18 16
24 C 0.09 2.00 5.90 86.36 0.51 2.51 16
25 C 0.27 5.31 1.67 30.67 0.05 5.37 16
26 F -0.20 -4.21 16.50 44.97 0.74 -3.47 16
27 F -0.21 -5.75 16.00 44.97 0.72 -5.03 16
28 H 0.05 0.67 7.84 -2.38 -0.02 0.65 16
29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16
30 H 0.06 0.70 7.77 -2.39 -0.02 0.68 16
31 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16
32 H 0.06 0.88 7.74 -2.38 -0.02 0.86 16
33 H 0.09 1.08 5.63 -2.39 -0.01 1.06 16
34 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16
35 H 0.41 10.17 6.38 -92.71 -0.59 9.58 16
36 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16
37 H 0.10 5.16 7.04 -2.91 -0.02 5.14 16
38 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16
39 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16
40 H 0.12 6.09 5.55 -2.91 -0.02 6.07 16
41 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16
42 H 0.09 2.42 7.05 -2.39 -0.02 2.40 16
Total: -1.00 -73.06 345.59 5.00 -68.06
By element:
Atomic # 1 Polarization: 27.88 SS G_CDS: 0.47 Total: 28.35 kcal
Atomic # 6 Polarization: -22.58 SS G_CDS: 4.95 Total: -17.63 kcal
Atomic # 7 Polarization: -80.44 SS G_CDS: -3.86 Total: -84.30 kcal
Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal
Atomic # 9 Polarization: -9.96 SS G_CDS: 1.46 Total: -8.50 kcal
Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal
Total: -73.06 5.00 -68.06 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000334552791.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.482 kcal
(2) G-P(sol) polarization free energy of solvation -73.061 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.543 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.058 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.540 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds