Wall clock time and date at job start Tue Mar 31 2020 15:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47623 * 2 1 4 4 N 1.46502 * 109.47138 * 240.00076 * 2 1 3 5 5 C 1.34780 * 119.99770 * 84.99885 * 4 2 1 6 6 O 1.21590 * 120.00390 * 354.79651 * 5 4 2 7 7 N 1.34780 * 119.99965 * 174.79579 * 5 4 2 8 8 C 1.46499 * 119.99879 * 184.97562 * 7 5 4 9 9 C 1.53006 * 109.46922 * 184.63448 * 8 7 5 10 10 C 1.50694 * 115.54914 * 64.87049 * 9 8 7 11 11 H 1.07996 * 120.00341 * 266.86127 * 10 9 8 12 12 C 1.37880 * 119.99602 * 86.86454 * 10 9 8 13 13 N 1.31514 * 119.99769 * 179.36250 * 12 10 9 14 14 Si 1.86798 * 120.00345 * 359.35959 * 12 10 9 15 15 H 1.48501 * 109.47083 * 89.68720 * 14 12 10 16 16 H 1.48495 * 109.47242 * 209.68627 * 14 12 10 17 17 H 1.48496 * 109.47120 * 329.68701 * 14 12 10 18 18 C 1.53005 * 117.49800 * 279.20076 * 9 8 7 19 19 C 1.52997 * 117.49523 * 210.54332 * 9 8 7 20 20 C 1.50703 * 109.47416 * 120.00454 * 2 1 3 21 21 C 1.38418 * 120.02123 * 254.99902 * 20 2 1 22 22 F 1.35098 * 120.01646 * 0.04010 * 21 20 2 23 23 C 1.38479 * 119.96977 * 180.02562 * 21 20 2 24 24 C 1.38206 * 120.02453 * 0.27465 * 23 21 20 25 25 C 1.38205 * 120.05145 * 359.45167 * 24 23 21 26 26 C 1.38420 * 120.02673 * 75.01772 * 20 2 1 27 27 F 1.35101 * 120.00733 * 359.95935 * 26 20 2 28 28 H 1.09009 * 109.47199 * 299.99646 * 1 2 3 29 29 H 1.09002 * 109.47601 * 59.99650 * 1 2 3 30 30 H 1.09004 * 109.47623 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00099 * 265.00372 * 4 2 1 32 32 H 0.96997 * 119.99664 * 4.97043 * 7 5 4 33 33 H 1.08996 * 109.47036 * 304.63209 * 8 7 5 34 34 H 1.08996 * 109.47355 * 64.63517 * 8 7 5 35 35 H 0.97005 * 120.00308 * 180.02562 * 13 12 10 36 36 H 1.08998 * 117.49466 * 0.02562 * 18 9 8 37 37 H 1.08988 * 117.49689 * 145.01741 * 18 9 8 38 38 H 1.08999 * 117.49595 * 214.97700 * 19 9 8 39 39 H 1.08995 * 117.50451 * 359.97438 * 19 9 8 40 40 H 1.08002 * 119.98236 * 179.97438 * 23 21 20 41 41 H 1.08007 * 119.96902 * 179.69713 * 24 23 21 42 42 H 1.07995 * 119.98611 * 180.25465 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.7695 1.1349 -2.4370 7 7 2.6941 -0.6239 -3.4297 8 6 2.9342 0.1378 -4.6578 9 6 3.4493 -0.8031 -5.7490 10 6 2.4793 -1.8625 -6.2047 11 1 2.4931 -2.8403 -5.7464 12 6 1.5744 -1.5834 -7.2068 13 7 0.7363 -2.5119 -7.6132 14 14 1.5387 0.1134 -7.9872 15 1 2.4655 0.1444 -9.1470 16 1 0.1599 0.4178 -8.4471 17 1 1.9622 1.1268 -6.9879 18 6 4.9346 -1.1693 -5.7226 19 6 4.3995 -0.2178 -6.7956 20 6 2.0323 -0.7105 1.2304 21 6 2.5557 0.0172 2.2852 22 9 2.6156 1.3649 2.2125 23 6 3.0175 -0.6368 3.4150 24 6 2.9613 -2.0158 3.4874 25 6 2.4337 -2.7430 2.4372 26 6 1.9712 -2.0913 1.3064 27 9 1.4602 -2.8026 0.2778 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2489 -1.6318 -1.1527 32 1 2.9289 -1.5641 -3.3883 33 1 2.0034 0.6001 -4.9864 34 1 3.6766 0.9123 -4.4658 35 1 0.0998 -2.3157 -8.3185 36 1 5.5446 -0.7404 -4.9276 37 1 5.2102 -2.1764 -6.0352 38 1 4.3233 -0.5994 -7.8137 39 1 4.6573 0.8375 -6.7071 40 1 3.4263 -0.0692 4.2380 41 1 3.3263 -2.5253 4.3670 42 1 2.3865 -3.8203 2.4965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430440716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:13 Heat of formation + Delta-G solvation = -65.966705 kcal Electronic energy + Delta-G solvation = -27464.326513 eV Core-core repulsion = 23274.432211 eV Total energy + Delta-G solvation = -4189.894302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 4.14 seconds Orbital eigenvalues (eV) -49.40294 -49.32422 -39.85666 -39.04982 -37.20162 -35.55693 -33.39651 -32.10332 -31.59306 -30.69210 -29.33507 -26.54490 -25.16266 -24.21369 -23.29179 -21.79635 -21.49105 -20.35213 -19.27635 -18.56159 -18.05874 -17.37986 -16.76323 -16.34785 -16.07896 -15.92997 -15.63442 -15.46011 -15.09794 -14.78552 -14.77641 -14.36954 -14.10419 -13.71542 -13.34153 -13.14462 -13.03951 -12.76456 -12.49465 -12.35726 -12.33127 -12.30934 -11.91306 -11.84012 -11.13126 -11.02934 -10.74269 -10.48506 -10.15342 -9.81748 -9.58129 -9.33715 -9.16230 -9.15734 -8.94922 -8.61885 -8.56392 -8.13674 -6.12768 -4.17113 0.52839 0.56127 2.86289 3.15428 3.31700 3.41978 3.48107 3.49952 3.68724 4.00355 4.06837 4.32846 4.37767 4.43310 4.65063 4.71751 5.02855 5.14594 5.17137 5.21781 5.34074 5.45782 5.50339 5.55771 5.70052 5.71354 5.72621 5.92715 6.04492 6.09237 6.21832 6.28642 6.35398 6.43691 6.51974 6.69239 6.72067 7.03160 7.11058 7.21326 7.42835 7.70771 8.43937 8.55386 8.87123 9.10602 9.50465 10.98628 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.003110 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.607971 B = 9000.863356 C = 9173.687672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.207 3.793 3 H 0.103 0.897 4 N -0.749 5.749 5 C 0.703 3.297 6 O -0.601 6.601 7 N -0.718 5.718 8 C 0.175 3.825 9 C -0.015 4.015 10 C -0.489 4.489 11 H 0.077 0.923 12 C 0.080 3.920 13 N -0.896 5.896 14 Si 0.879 3.121 15 H -0.278 1.278 16 H -0.294 1.294 17 H -0.257 1.257 18 C -0.179 4.179 19 C -0.193 4.193 20 C -0.162 4.162 21 C 0.141 3.859 22 F -0.125 7.125 23 C -0.163 4.163 24 C -0.063 4.063 25 C -0.162 4.162 26 C 0.137 3.863 27 F -0.121 7.121 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.396 0.604 32 H 0.399 0.601 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.805 0.498 23.586 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.101 3.899 3 H 0.121 0.879 4 N -0.408 5.408 5 C 0.403 3.597 6 O -0.480 6.480 7 N -0.370 5.370 8 C 0.050 3.950 9 C -0.017 4.017 10 C -0.526 4.526 11 H 0.095 0.905 12 C -0.123 4.123 13 N -0.533 5.533 14 Si 0.707 3.293 15 H -0.204 1.204 16 H -0.221 1.221 17 H -0.181 1.181 18 C -0.216 4.216 19 C -0.230 4.230 20 C -0.164 4.164 21 C 0.121 3.879 22 F -0.103 7.103 23 C -0.182 4.182 24 C -0.081 4.081 25 C -0.180 4.180 26 C 0.117 3.883 27 F -0.099 7.099 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.233 0.767 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.316 1.562 23.291 23.739 hybrid contribution -0.011 0.010 -0.728 0.728 sum 4.306 1.571 22.562 23.023 Atomic orbital electron populations 1.22204 0.93877 1.02694 1.03101 1.19376 0.94526 0.96510 0.79527 0.87904 1.45277 1.72931 1.13954 1.08619 1.15941 0.78714 0.84776 0.80237 1.90869 1.56039 1.17080 1.84026 1.44972 1.65656 1.14239 1.12178 1.21022 0.99738 0.92122 0.82067 1.19635 0.89593 0.97501 0.94940 1.20167 1.15381 0.97407 1.19623 0.90469 1.24962 0.94558 0.96752 0.96037 1.69885 1.20744 1.33524 1.29131 0.86854 0.76733 0.85575 0.80132 1.20420 1.22075 1.18067 1.22836 0.98459 0.99521 1.00794 1.22951 1.06999 0.97083 0.96012 1.20136 1.05107 0.92992 0.98204 1.17151 0.98941 0.77355 0.94443 1.91553 1.93935 1.28462 1.96369 1.21227 1.03563 0.95498 0.97894 1.20877 0.96244 0.92735 0.98213 1.21254 1.02107 1.01713 0.92969 1.17223 0.97155 0.88063 0.85833 1.91504 1.84253 1.77704 1.56487 0.91839 0.90513 0.92128 0.76745 0.76694 0.91636 0.94270 0.92517 0.90913 0.89445 0.89135 0.90724 0.83796 0.83773 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.42 37.15 0.35 -1.75 16 2 C 0.21 2.84 2.52 -69.08 -0.17 2.66 16 3 H 0.10 1.57 6.79 -51.93 -0.35 1.22 16 4 N -0.75 -11.56 4.87 -59.81 -0.29 -11.85 16 5 C 0.70 13.71 8.51 -86.91 -0.74 12.97 16 6 O -0.60 -13.70 15.99 5.29 0.08 -13.62 16 7 N -0.72 -14.10 5.46 -65.22 -0.36 -14.46 16 8 C 0.17 3.81 5.16 -4.04 -0.02 3.79 16 9 C -0.02 -0.34 0.82 -155.66 -0.13 -0.47 16 10 C -0.49 -13.05 9.29 -34.44 -0.32 -13.37 16 11 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 12 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 13 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 14 Si 0.88 21.83 24.83 -169.99 -4.22 17.61 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 17 H -0.26 -6.16 5.81 56.52 0.33 -5.83 16 18 C -0.18 -3.46 9.96 -26.69 -0.27 -3.73 16 19 C -0.19 -4.00 7.60 -26.69 -0.20 -4.20 16 20 C -0.16 -1.79 4.96 -104.49 -0.52 -2.30 16 21 C 0.14 1.39 7.25 -39.43 -0.29 1.11 16 22 F -0.12 -1.40 16.27 2.25 0.04 -1.36 16 23 C -0.16 -1.13 10.03 -39.50 -0.40 -1.53 16 24 C -0.06 -0.35 10.04 -39.61 -0.40 -0.75 16 25 C -0.16 -1.15 10.02 -39.51 -0.40 -1.55 16 26 C 0.14 1.36 6.83 -39.43 -0.27 1.09 16 27 F -0.12 -1.37 14.24 2.25 0.03 -1.34 16 28 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 30 H 0.06 0.77 7.65 -51.93 -0.40 0.37 16 31 H 0.40 5.48 6.19 -40.82 -0.25 5.22 16 32 H 0.40 7.24 8.46 -40.82 -0.35 6.90 16 33 H 0.07 1.60 6.66 -51.93 -0.35 1.26 16 34 H 0.04 0.82 8.09 -51.93 -0.42 0.39 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.69 8.14 -51.94 -0.42 1.27 16 38 H 0.09 1.97 7.23 -51.93 -0.38 1.59 16 39 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 42 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -32.26 355.79 -7.94 -40.20 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.50 Total: 11.44 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.86 Total: -5.88 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.13 Total: -52.43 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.62 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.07 Total: -2.70 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.22 Total: 17.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.26 -7.94 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430440716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.767 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.14 seconds