Wall clock time and date at job start Tue Mar 31 2020 15:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47623 * 2 1 4 4 N 1.46502 * 109.47138 * 240.00076 * 2 1 3 5 5 C 1.34780 * 119.99770 * 84.99885 * 4 2 1 6 6 O 1.21590 * 120.00390 * 354.79651 * 5 4 2 7 7 N 1.34780 * 119.99965 * 174.79579 * 5 4 2 8 8 C 1.46499 * 119.99879 * 184.97562 * 7 5 4 9 9 C 1.53006 * 109.46922 * 184.63448 * 8 7 5 10 10 C 1.50694 * 115.54914 * 64.87049 * 9 8 7 11 11 H 1.07996 * 120.00341 * 266.86127 * 10 9 8 12 12 C 1.37880 * 119.99602 * 86.86454 * 10 9 8 13 13 N 1.31514 * 119.99769 * 179.36250 * 12 10 9 14 14 Si 1.86798 * 120.00345 * 359.35959 * 12 10 9 15 15 H 1.48501 * 109.47083 * 89.68720 * 14 12 10 16 16 H 1.48495 * 109.47242 * 209.68627 * 14 12 10 17 17 H 1.48496 * 109.47120 * 329.68701 * 14 12 10 18 18 C 1.53005 * 117.49800 * 279.20076 * 9 8 7 19 19 C 1.52997 * 117.49523 * 210.54332 * 9 8 7 20 20 C 1.50703 * 109.47416 * 120.00454 * 2 1 3 21 21 C 1.38418 * 120.02123 * 254.99902 * 20 2 1 22 22 F 1.35098 * 120.01646 * 0.04010 * 21 20 2 23 23 C 1.38479 * 119.96977 * 180.02562 * 21 20 2 24 24 C 1.38206 * 120.02453 * 0.27465 * 23 21 20 25 25 C 1.38205 * 120.05145 * 359.45167 * 24 23 21 26 26 C 1.38420 * 120.02673 * 75.01772 * 20 2 1 27 27 F 1.35101 * 120.00733 * 359.95935 * 26 20 2 28 28 H 1.09009 * 109.47199 * 299.99646 * 1 2 3 29 29 H 1.09002 * 109.47601 * 59.99650 * 1 2 3 30 30 H 1.09004 * 109.47623 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00099 * 265.00372 * 4 2 1 32 32 H 0.96997 * 119.99664 * 4.97043 * 7 5 4 33 33 H 1.08996 * 109.47036 * 304.63209 * 8 7 5 34 34 H 1.08996 * 109.47355 * 64.63517 * 8 7 5 35 35 H 0.97005 * 120.00308 * 180.02562 * 13 12 10 36 36 H 1.08998 * 117.49466 * 0.02562 * 18 9 8 37 37 H 1.08988 * 117.49689 * 145.01741 * 18 9 8 38 38 H 1.08999 * 117.49595 * 214.97700 * 19 9 8 39 39 H 1.08995 * 117.50451 * 359.97438 * 19 9 8 40 40 H 1.08002 * 119.98236 * 179.97438 * 23 21 20 41 41 H 1.08007 * 119.96902 * 179.69713 * 24 23 21 42 42 H 1.07995 * 119.98611 * 180.25465 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.7695 1.1349 -2.4370 7 7 2.6941 -0.6239 -3.4297 8 6 2.9342 0.1378 -4.6578 9 6 3.4493 -0.8031 -5.7490 10 6 2.4793 -1.8625 -6.2047 11 1 2.4931 -2.8403 -5.7464 12 6 1.5744 -1.5834 -7.2068 13 7 0.7363 -2.5119 -7.6132 14 14 1.5387 0.1134 -7.9872 15 1 2.4655 0.1444 -9.1470 16 1 0.1599 0.4178 -8.4471 17 1 1.9622 1.1268 -6.9879 18 6 4.9346 -1.1693 -5.7226 19 6 4.3995 -0.2178 -6.7956 20 6 2.0323 -0.7105 1.2304 21 6 2.5557 0.0172 2.2852 22 9 2.6156 1.3649 2.2125 23 6 3.0175 -0.6368 3.4150 24 6 2.9613 -2.0158 3.4874 25 6 2.4337 -2.7430 2.4372 26 6 1.9712 -2.0913 1.3064 27 9 1.4602 -2.8026 0.2778 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2489 -1.6318 -1.1527 32 1 2.9289 -1.5641 -3.3883 33 1 2.0034 0.6001 -4.9864 34 1 3.6766 0.9123 -4.4658 35 1 0.0998 -2.3157 -8.3185 36 1 5.5446 -0.7404 -4.9276 37 1 5.2102 -2.1764 -6.0352 38 1 4.3233 -0.5994 -7.8137 39 1 4.6573 0.8375 -6.7071 40 1 3.4263 -0.0692 4.2380 41 1 3.3263 -2.5253 4.3670 42 1 2.3865 -3.8203 2.4965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430440716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:10 Heat of formation + Delta-G solvation = -87.185319 kcal Electronic energy + Delta-G solvation = -27465.246621 eV Core-core repulsion = 23274.432211 eV Total energy + Delta-G solvation = -4190.814410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.18753 -50.08880 -41.21809 -39.92392 -38.85687 -36.75652 -35.06109 -34.22182 -32.67594 -31.29954 -30.29361 -28.33822 -27.02838 -25.14345 -23.97677 -23.37065 -22.53295 -21.76053 -21.08877 -19.63561 -19.14840 -18.44667 -18.22528 -17.43471 -17.09740 -16.86906 -16.66192 -16.57072 -16.43366 -16.41645 -15.71252 -15.57599 -15.48774 -14.95840 -14.83567 -14.68025 -14.45354 -14.13499 -13.78087 -13.74230 -13.27609 -13.10105 -13.07163 -12.93431 -12.74062 -12.63468 -12.18949 -11.98853 -11.97608 -11.62805 -11.38538 -10.99192 -10.66744 -10.46405 -10.35158 -10.00258 -9.78841 -9.71801 -8.30560 -6.36578 -0.12612 -0.05558 1.32773 1.39187 1.49463 1.68894 2.12098 2.36168 2.37094 2.80998 3.04065 3.09458 3.20760 3.36897 3.45023 3.68163 3.84621 4.02696 4.12592 4.17918 4.22477 4.36345 4.42197 4.52028 4.53253 4.68929 4.75113 4.77718 4.84139 4.87113 4.99156 5.05421 5.09450 5.11464 5.19775 5.30609 5.42161 5.49111 5.59717 5.69577 5.74248 5.99182 6.27640 6.71402 7.07516 7.33818 7.55971 8.84217 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.003110 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.607971 B = 9000.863356 C = 9173.687672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.204 3.796 3 H 0.082 0.918 4 N -0.734 5.734 5 C 0.700 3.300 6 O -0.637 6.637 7 N -0.717 5.717 8 C 0.184 3.816 9 C -0.041 4.041 10 C -0.477 4.477 11 H 0.044 0.956 12 C 0.025 3.975 13 N -0.945 5.945 14 Si 0.930 3.070 15 H -0.262 1.262 16 H -0.304 1.304 17 H -0.244 1.244 18 C -0.150 4.150 19 C -0.190 4.190 20 C -0.179 4.179 21 C 0.121 3.879 22 F -0.139 7.139 23 C -0.152 4.152 24 C -0.045 4.045 25 C -0.153 4.153 26 C 0.117 3.883 27 F -0.136 7.136 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.405 0.595 32 H 0.406 0.594 33 H 0.033 0.967 34 H 0.055 0.945 35 H 0.264 0.736 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.171 0.829 41 H 0.187 0.813 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.014 0.480 26.278 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.099 3.901 3 H 0.100 0.900 4 N -0.393 5.393 5 C 0.400 3.600 6 O -0.519 6.519 7 N -0.370 5.370 8 C 0.059 3.941 9 C -0.043 4.043 10 C -0.515 4.515 11 H 0.062 0.938 12 C -0.173 4.173 13 N -0.585 5.585 14 Si 0.755 3.245 15 H -0.187 1.187 16 H -0.231 1.231 17 H -0.167 1.167 18 C -0.187 4.187 19 C -0.228 4.228 20 C -0.181 4.181 21 C 0.101 3.899 22 F -0.118 7.118 23 C -0.170 4.170 24 C -0.062 4.062 25 C -0.171 4.171 26 C 0.097 3.903 27 F -0.115 7.115 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.243 0.757 32 H 0.241 0.759 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.189 0.811 41 H 0.204 0.796 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.555 1.518 26.020 26.876 hybrid contribution -0.661 -0.090 -1.402 1.553 sum 5.894 1.428 24.619 25.355 Atomic orbital electron populations 1.22131 0.93762 1.02722 1.02630 1.19388 0.94722 0.95841 0.80150 0.89987 1.45217 1.71806 1.14235 1.08004 1.16102 0.78435 0.84465 0.80991 1.90838 1.57545 1.18772 1.84738 1.44894 1.65846 1.14445 1.11822 1.20772 0.98513 0.92329 0.82467 1.19442 0.90507 0.97691 0.96611 1.20348 1.15629 0.97177 1.18300 0.93811 1.25712 0.94572 0.99887 0.97098 1.70017 1.22302 1.35631 1.30534 0.86031 0.76453 0.81991 0.79988 1.18748 1.23135 1.16712 1.22871 0.95724 0.99493 1.00618 1.23024 1.05633 0.98824 0.95323 1.19892 1.07230 0.93573 0.97424 1.17457 1.00157 0.76872 0.95408 1.91516 1.94192 1.29564 1.96522 1.21603 1.01940 0.96313 0.97175 1.21394 0.94032 0.92095 0.98724 1.21614 1.00590 1.03030 0.91902 1.17486 0.98441 0.87667 0.86673 1.91461 1.84729 1.77878 1.57398 0.89763 0.93448 0.91754 0.75701 0.75934 0.94855 0.92640 0.92714 0.87833 0.89503 0.90195 0.88230 0.81149 0.79557 0.81369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.42 71.98 0.68 -3.52 16 2 C 0.20 5.78 2.52 44.24 0.11 5.89 16 3 H 0.08 2.65 6.79 -2.39 -0.02 2.63 16 4 N -0.73 -23.18 4.87 -461.40 -2.25 -25.42 16 5 C 0.70 27.87 8.51 179.05 1.52 29.39 16 6 O -0.64 -29.91 15.99 -4.00 -0.06 -29.98 16 7 N -0.72 -28.28 5.46 -478.53 -2.61 -30.89 16 8 C 0.18 7.92 5.16 86.38 0.45 8.37 16 9 C -0.04 -1.81 0.82 -52.93 -0.04 -1.85 16 10 C -0.48 -25.89 9.29 25.60 0.24 -25.66 16 11 H 0.04 2.61 8.06 -2.91 -0.02 2.58 16 12 C 0.03 1.45 5.47 84.66 0.46 1.91 16 13 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 14 Si 0.93 45.34 24.83 68.60 1.70 47.04 16 15 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 16 H -0.30 -15.20 7.11 99.48 0.71 -14.50 16 17 H -0.24 -11.29 5.81 99.48 0.58 -10.71 16 18 C -0.15 -5.39 9.96 30.62 0.30 -5.09 16 19 C -0.19 -7.40 7.60 30.62 0.23 -7.17 16 20 C -0.18 -3.84 4.96 -19.78 -0.10 -3.94 16 21 C 0.12 2.23 7.25 22.37 0.16 2.39 16 22 F -0.14 -3.09 16.27 44.97 0.73 -2.36 16 23 C -0.15 -1.57 10.03 22.32 0.22 -1.35 16 24 C -0.04 -0.30 10.04 22.25 0.22 -0.08 16 25 C -0.15 -1.66 10.02 22.32 0.22 -1.43 16 26 C 0.12 2.16 6.83 22.37 0.15 2.31 16 27 F -0.14 -3.03 14.24 44.97 0.64 -2.39 16 28 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.05 1.55 8.09 -2.39 -0.02 1.53 16 30 H 0.06 1.67 7.65 -2.39 -0.02 1.65 16 31 H 0.40 11.33 6.19 -92.71 -0.57 10.75 16 32 H 0.41 14.76 8.46 -92.71 -0.78 13.98 16 33 H 0.03 1.64 6.66 -2.39 -0.02 1.62 16 34 H 0.06 2.21 8.09 -2.39 -0.02 2.19 16 35 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 36 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.08 3.30 7.23 -2.39 -0.02 3.28 16 39 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 41 H 0.19 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -73.49 355.79 2.88 -70.61 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.41 Total: 31.57 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 4.84 Total: 0.18 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -4.56 Total: -114.67 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.06 Total: -29.98 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.37 Total: -4.74 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.70 Total: 47.04 kcal Total: -73.49 2.88 -70.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430440716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.580 kcal (2) G-P(sol) polarization free energy of solvation -73.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds