Wall clock time and date at job start Tue Mar 31 2020 15:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47267 * 2 1 4 4 C 1.53004 * 109.47495 * 239.99907 * 2 1 3 5 5 H 1.09001 * 109.47419 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.46886 * 59.99836 * 4 2 1 7 7 N 1.46498 * 109.46715 * 300.00035 * 4 2 1 8 8 C 1.34780 * 120.00123 * 204.99688 * 7 4 2 9 9 O 1.21282 * 119.99642 * 359.97438 * 8 7 4 10 10 C 1.50699 * 120.00204 * 180.02562 * 8 7 4 11 11 N 1.46500 * 109.46974 * 180.02562 * 10 8 7 12 12 C 1.38896 * 120.00096 * 179.97438 * 11 10 8 13 13 C 1.39551 * 119.84521 * 359.72992 * 12 11 10 14 14 C 1.36341 * 120.16936 * 179.75810 * 13 12 11 15 15 C 1.40910 * 119.85979 * 0.53105 * 14 13 12 16 16 C 1.41125 * 120.15514 * 179.73942 * 15 14 13 17 17 H 1.07996 * 119.99843 * 150.10530 * 16 15 14 18 18 C 1.39864 * 120.00035 * 330.11364 * 16 15 14 19 19 N 1.30901 * 120.00001 * 161.72233 * 18 16 15 20 20 Si 1.86805 * 119.99855 * 341.72008 * 18 16 15 21 21 H 1.48497 * 109.47108 * 95.41871 * 20 18 16 22 22 H 1.48501 * 109.46810 * 215.41738 * 20 18 16 23 23 H 1.48496 * 109.47020 * 335.41728 * 20 18 16 24 24 C 1.40862 * 119.69340 * 359.71826 * 15 14 13 25 25 C 1.36434 * 119.83110 * 0.02562 * 24 15 14 26 26 Cl 1.73599 * 119.93219 * 179.97438 * 25 24 15 27 27 H 1.08995 * 109.47291 * 300.00345 * 1 2 3 28 28 H 1.08993 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46834 * 60.00371 * 1 2 3 30 30 H 1.09007 * 109.47099 * 119.99823 * 2 1 3 31 31 H 1.08996 * 109.46736 * 59.99507 * 3 2 1 32 32 H 1.08995 * 109.46836 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46891 * 299.99594 * 3 2 1 34 34 H 1.09006 * 109.47055 * 179.97438 * 6 4 2 35 35 H 1.09001 * 109.47325 * 300.00344 * 6 4 2 36 36 H 1.09002 * 109.46920 * 60.00563 * 6 4 2 37 37 H 0.96998 * 120.00532 * 25.00465 * 7 4 2 38 38 H 1.09003 * 109.46758 * 299.99281 * 10 8 7 39 39 H 1.08995 * 109.47185 * 59.99689 * 10 8 7 40 40 H 0.97007 * 119.99857 * 359.97438 * 11 10 8 41 41 H 1.08001 * 119.91480 * 359.97438 * 13 12 11 42 42 H 1.08005 * 120.07211 * 180.24616 * 14 13 12 43 43 H 0.97000 * 119.99898 * 180.02562 * 19 18 16 44 44 H 1.08004 * 120.08319 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 3.1301 -0.7217 -1.2490 6 6 1.5301 -0.0001 -2.4984 7 7 1.5517 -2.1025 -1.2492 8 6 2.2285 -3.0566 -1.9186 9 8 3.2416 -2.7716 -2.5214 10 6 1.7259 -4.4773 -1.9190 11 7 2.6302 -5.3150 -2.7106 12 6 2.3712 -6.6718 -2.8560 13 6 1.2516 -7.2348 -2.2420 14 6 0.9884 -8.5649 -2.3844 15 6 1.8559 -9.3744 -3.1445 16 6 1.5923 -10.7530 -3.2915 17 1 1.9049 -11.2701 -4.1866 18 6 0.9262 -11.4495 -2.2779 19 7 0.3664 -12.6043 -2.5363 20 14 0.8353 -10.7320 -0.5556 21 1 -0.4447 -9.9971 -0.3924 22 1 0.9068 -11.8295 0.4422 23 1 1.9717 -9.7990 -0.3476 24 6 2.9871 -8.8010 -3.7575 25 6 3.2357 -7.4675 -3.6111 26 17 4.6295 -6.7583 -4.3648 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.8939 -0.5136 -3.3885 35 1 0.4401 0.0000 -2.4985 36 1 1.8935 1.0276 -2.4985 37 1 0.7413 -2.3304 -0.7674 38 1 1.6890 -4.8499 -0.8953 39 1 0.7268 -4.5091 -2.3535 40 1 3.4100 -4.9220 -3.1332 41 1 0.5901 -6.6146 -1.6553 42 1 0.1193 -8.9983 -1.9117 43 1 -0.0959 -13.0872 -1.8334 44 1 3.6560 -9.4155 -4.3419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453119410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:59 Heat of formation + Delta-G solvation = -54.922942 kcal Electronic energy + Delta-G solvation = -24575.135586 eV Core-core repulsion = 20937.516857 eV Total energy + Delta-G solvation = -3637.618729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.19231 -40.07062 -38.40170 -37.26327 -36.53451 -34.87915 -34.33128 -31.71152 -31.45492 -30.44188 -28.53136 -27.94866 -25.82511 -24.84963 -23.59324 -22.27248 -21.35416 -20.39878 -19.43986 -19.00504 -17.58013 -17.42525 -16.77607 -16.69594 -16.48600 -16.07695 -15.96457 -15.26820 -14.90290 -14.79155 -14.57262 -14.46448 -14.28720 -14.05525 -13.90376 -13.81053 -13.56458 -13.19950 -13.06858 -12.98637 -12.68602 -12.41052 -12.33512 -12.27590 -11.95629 -11.94515 -11.65524 -11.57294 -11.51032 -11.43662 -11.11847 -10.99213 -10.57899 -10.14254 -9.52888 -8.78264 -8.40901 -6.23610 0.65297 0.83157 1.31572 1.40613 1.48138 1.51967 1.56432 1.96571 2.19303 2.62090 2.81806 3.47280 3.66189 3.78400 3.91018 4.10724 4.11816 4.39510 4.40762 4.43848 4.45290 4.47573 4.57921 4.77835 4.79948 4.86609 4.87040 4.98647 5.01266 5.04878 5.07407 5.16207 5.25601 5.25939 5.39257 5.45818 5.51010 5.53107 5.56737 5.86743 6.02728 6.33970 6.41157 6.56207 6.77810 6.88041 6.95284 7.16610 8.31460 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.002852 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.140923 B = 9814.048549 C =11149.409759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 C -0.148 4.148 4 C 0.144 3.856 5 H 0.063 0.937 6 C -0.163 4.163 7 N -0.708 5.708 8 C 0.512 3.488 9 O -0.577 6.577 10 C 0.108 3.892 11 N -0.746 5.746 12 C 0.128 3.872 13 C -0.136 4.136 14 C -0.191 4.191 15 C 0.043 3.957 16 C -0.484 4.484 17 H 0.050 0.950 18 C 0.043 3.957 19 N -0.861 5.861 20 Si 0.963 3.037 21 H -0.248 1.248 22 H -0.284 1.284 23 H -0.252 1.252 24 C -0.170 4.170 25 C -0.066 4.066 26 Cl -0.093 7.093 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.416 0.584 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.400 0.600 41 H 0.148 0.852 42 H 0.111 0.889 43 H 0.290 0.710 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 26.197 9.126 27.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.115 4.115 3 C -0.206 4.206 4 C 0.040 3.960 5 H 0.082 0.918 6 C -0.221 4.221 7 N -0.362 5.362 8 C 0.299 3.701 9 O -0.456 6.456 10 C -0.019 4.019 11 N -0.384 5.384 12 C 0.026 3.974 13 C -0.158 4.158 14 C -0.211 4.211 15 C 0.040 3.960 16 C -0.515 4.515 17 H 0.068 0.932 18 C -0.170 4.170 19 N -0.489 5.489 20 Si 0.786 3.214 21 H -0.172 1.172 22 H -0.211 1.211 23 H -0.175 1.175 24 C -0.190 4.190 25 C -0.097 4.097 26 Cl -0.065 7.065 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.255 0.745 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.238 0.762 41 H 0.166 0.834 42 H 0.129 0.871 43 H 0.101 0.899 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.532 26.309 8.778 27.850 hybrid contribution 0.303 -0.571 0.008 0.646 sum -2.229 25.738 8.786 27.288 Atomic orbital electron populations 1.21944 0.93653 1.02425 1.02945 1.21329 0.97295 0.96870 0.96046 1.21875 1.01003 0.94684 1.02995 1.21035 0.98649 0.80087 0.96267 0.91829 1.22245 1.02365 1.00944 0.96542 1.45959 1.29382 1.08142 1.52683 1.20803 0.83344 0.87960 0.78042 1.90685 1.26831 1.83071 1.45060 1.21150 0.95201 0.86864 0.98721 1.43863 1.30887 1.04201 1.59436 1.17114 0.95795 0.84183 1.00259 1.20256 0.97289 0.94925 1.03336 1.20875 1.00415 0.94044 1.05770 1.17597 0.91200 0.93402 0.93843 1.19205 1.34036 0.93803 1.04430 0.93202 1.26801 0.90867 0.94685 1.04608 1.69771 1.26910 1.15419 1.36799 0.85535 0.81107 0.78252 0.76533 1.17229 1.21094 1.17516 1.20593 0.98732 0.92700 1.07004 1.20067 0.91902 0.93317 1.04407 1.98266 1.42423 1.84263 1.81509 0.91438 0.92020 0.91763 0.90557 0.91229 0.92979 0.91594 0.94837 0.90693 0.90144 0.74538 0.87695 0.87591 0.76249 0.83405 0.87142 0.89933 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.67 71.98 0.62 -0.35 16 2 C -0.10 -0.89 2.91 -10.79 -0.03 -0.92 16 3 C -0.15 -1.20 8.84 71.99 0.64 -0.56 16 4 C 0.14 2.11 2.40 44.99 0.11 2.22 16 5 H 0.06 1.27 7.58 -2.39 -0.02 1.25 16 6 C -0.16 -2.32 8.78 71.98 0.63 -1.69 16 7 N -0.71 -10.56 5.00 -442.53 -2.21 -12.77 16 8 C 0.51 11.76 7.86 87.66 0.69 12.45 16 9 O -0.58 -18.44 15.33 -3.04 -0.05 -18.49 16 10 C 0.11 2.41 5.37 85.63 0.46 2.87 16 11 N -0.75 -23.90 5.63 -342.61 -1.93 -25.82 16 12 C 0.13 4.83 6.67 38.68 0.26 5.09 16 13 C -0.14 -4.99 9.23 22.14 0.20 -4.79 16 14 C -0.19 -8.41 7.11 22.48 0.16 -8.25 16 15 C 0.04 2.17 5.10 -21.27 -0.11 2.07 16 16 C -0.48 -27.12 9.55 23.37 0.22 -26.89 16 17 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 18 C 0.04 2.28 5.40 85.23 0.46 2.74 16 19 N -0.86 -47.50 13.93 21.82 0.30 -47.20 16 20 Si 0.96 41.22 24.51 68.60 1.68 42.90 16 21 H -0.25 -9.55 6.70 99.48 0.67 -8.88 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.25 -10.94 6.87 99.48 0.68 -10.25 16 24 C -0.17 -7.99 9.50 22.49 0.21 -7.78 16 25 C -0.07 -2.78 6.30 22.19 0.14 -2.64 16 26 Cl -0.09 -3.46 27.55 -2.72 -0.07 -3.53 16 27 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 0.31 6.50 -2.39 -0.02 0.30 16 29 H 0.06 0.42 6.43 -2.39 -0.02 0.40 16 30 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.49 6.43 -2.39 -0.02 0.47 16 34 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.07 0.85 6.43 -2.39 -0.02 0.83 16 36 H 0.08 0.93 6.43 -2.39 -0.02 0.91 16 37 H 0.42 3.61 6.87 -92.71 -0.64 2.97 16 38 H 0.11 1.91 7.92 -2.39 -0.02 1.90 16 39 H 0.11 1.92 7.94 -2.39 -0.02 1.90 16 40 H 0.40 13.89 6.07 -92.70 -0.56 13.33 16 41 H 0.15 4.09 6.68 -2.91 -0.02 4.07 16 42 H 0.11 4.74 4.73 -2.91 -0.01 4.73 16 43 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 44 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -66.37 361.45 2.17 -64.20 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.22 Total: 27.16 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 4.67 Total: -26.45 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -3.84 Total: -85.79 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.05 Total: -18.49 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.68 Total: 42.90 kcal Atomic # 17 Polarization: -3.46 SS G_CDS: -0.07 Total: -3.53 kcal Total: -66.37 2.17 -64.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453119410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.277 kcal (2) G-P(sol) polarization free energy of solvation -66.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds