Wall clock time and date at job start Tue Mar 31 2020 15:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34897 * 116.99748 * 2 1 4 4 O 1.21613 * 120.00537 * 0.02562 * 3 2 1 5 5 C 1.46477 * 119.99631 * 179.97438 * 3 2 1 6 6 C 1.36646 * 125.99339 * 180.02562 * 5 3 2 7 7 C 1.40302 * 106.70095 * 180.26559 * 6 5 3 8 8 C 1.35173 * 107.12666 * 359.60845 * 7 6 5 9 9 C 1.50702 * 125.60998 * 180.17719 * 8 7 6 10 10 H 1.09007 * 109.46999 * 340.28075 * 9 8 7 11 11 C 1.53002 * 109.46829 * 100.27469 * 9 8 7 12 12 O 1.45200 * 109.47420 * 220.27726 * 9 8 7 13 13 C 1.34228 * 117.00055 * 150.00030 * 12 9 8 14 14 O 1.20831 * 120.00061 * 0.02562 * 13 12 9 15 15 C 1.50694 * 120.00059 * 180.02562 * 13 12 9 16 16 C 1.53004 * 109.47113 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47086 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47322 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47349 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00440 * 359.97438 * 19 18 17 21 21 C 1.37883 * 120.00021 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99850 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00167 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46878 * 89.99954 * 23 21 19 25 25 H 1.48494 * 109.47224 * 209.99939 * 23 21 19 26 26 H 1.48501 * 109.46847 * 330.00587 * 23 21 19 27 27 O 1.33906 * 108.77985 * 0.39863 * 8 7 6 28 28 H 1.09001 * 109.46785 * 299.99309 * 1 2 3 29 29 H 1.09000 * 109.47067 * 59.99413 * 1 2 3 30 30 H 1.08995 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08002 * 126.64661 * 359.97438 * 6 5 3 32 32 H 1.07998 * 126.43730 * 179.72393 * 7 6 5 33 33 H 1.08990 * 109.47472 * 300.00589 * 11 9 8 34 34 H 1.09007 * 109.46835 * 60.00506 * 11 9 8 35 35 H 1.09007 * 109.47259 * 179.97438 * 11 9 8 36 36 H 1.09000 * 109.47367 * 299.99981 * 15 13 12 37 37 H 1.08998 * 109.47228 * 60.00229 * 15 13 12 38 38 H 1.08999 * 109.47292 * 299.99516 * 16 15 13 39 39 H 1.08998 * 109.47094 * 59.99892 * 16 15 13 40 40 H 1.09005 * 109.46842 * 299.99514 * 17 16 15 41 41 H 1.08998 * 109.47345 * 59.99920 * 17 16 15 42 42 H 1.09006 * 109.46951 * 300.00298 * 18 17 16 43 43 H 1.09003 * 109.47341 * 59.99350 * 18 17 16 44 44 H 0.97001 * 119.99740 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4021 2.2219 0.0005 5 6 3.5271 1.2786 0.0006 6 6 4.2713 2.4247 0.0011 7 6 5.6179 2.0311 -0.0047 8 6 5.6376 0.6795 0.0003 9 6 6.8755 -0.1801 0.0006 10 1 7.7249 0.4061 -0.3503 11 6 7.1509 -0.6769 1.4213 12 8 6.6753 -1.3173 -0.8796 13 6 7.7636 -1.8185 -1.4847 14 8 8.8477 -1.3237 -1.2851 15 6 7.6334 -2.9984 -2.4130 16 6 9.0119 -3.3680 -2.9645 17 6 8.8796 -4.5656 -3.9075 18 6 10.2581 -4.9356 -4.4585 19 6 10.1279 -6.1155 -5.3869 20 1 9.1590 -6.5576 -5.5657 21 6 11.2459 -6.6307 -6.0080 22 7 11.1322 -7.6601 -6.8186 23 14 12.9219 -5.8656 -5.6994 24 1 13.5644 -6.5329 -4.5387 25 1 13.7739 -6.0377 -6.9033 26 1 12.7596 -4.4181 -5.4105 27 8 4.3763 0.2300 0.0001 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8955 3.4372 0.0008 32 1 6.4774 2.6850 -0.0101 33 1 7.3011 0.1767 2.0821 34 1 6.3014 -1.2631 1.7722 35 1 8.0460 -1.2991 1.4215 36 1 7.2217 -3.8470 -1.8667 37 1 6.9691 -2.7403 -3.2377 38 1 9.4241 -2.5197 -3.5109 39 1 9.6760 -3.6263 -2.1396 40 1 8.4673 -5.4141 -3.3615 41 1 8.2157 -4.3069 -4.7324 42 1 10.6710 -4.0871 -5.0043 43 1 10.9218 -5.1943 -3.6335 44 1 11.9188 -8.0228 -7.2553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:35 Heat of formation + Delta-G solvation = -171.822920 kcal Electronic energy + Delta-G solvation = -26089.178848 eV Core-core repulsion = 21973.489040 eV Total energy + Delta-G solvation = -4115.689808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -43.33465 -40.81153 -40.60223 -37.21312 -37.03525 -35.16426 -33.96633 -33.12595 -32.59117 -30.41010 -30.01487 -28.04424 -26.44962 -25.07381 -23.41331 -22.36455 -21.96837 -20.91182 -20.43257 -20.11963 -18.99565 -17.83944 -17.65278 -17.31833 -17.09408 -16.63574 -16.59980 -16.17941 -15.23432 -14.87059 -14.53959 -14.24495 -14.12293 -13.76180 -13.72499 -13.61640 -13.52290 -13.34304 -12.71116 -12.68002 -12.54266 -12.52293 -12.23640 -11.90778 -11.79317 -11.38029 -11.34014 -11.19689 -11.15438 -10.83687 -10.63076 -10.61976 -10.60633 -9.90673 -9.70747 -9.57314 -9.24316 -9.15887 -8.51844 -6.02706 -4.00531 0.25322 1.56482 1.73995 2.07847 2.34534 2.39141 2.44069 3.32830 3.40186 3.44993 3.83720 4.24964 4.29774 4.39674 4.47408 4.52255 4.62727 4.65757 4.72178 4.94513 5.00201 5.05704 5.07879 5.14847 5.16926 5.25120 5.31582 5.31756 5.57819 5.63830 5.68843 5.69479 5.90791 5.99924 6.13849 6.28361 6.32288 6.57769 6.71432 6.92406 7.10888 7.32671 7.45404 7.58646 7.81703 8.55564 9.02302 9.60200 11.10701 Molecular weight = 324.15amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.001895 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.068350 B =14774.269871 C =15705.210343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.346 6.346 3 C 0.555 3.445 4 O -0.487 6.487 5 C -0.065 4.065 6 C -0.100 4.100 7 C -0.207 4.207 8 C 0.039 3.961 9 C 0.162 3.838 10 H 0.122 0.878 11 C -0.170 4.170 12 O -0.349 6.349 13 C 0.464 3.536 14 O -0.503 6.503 15 C -0.112 4.112 16 C -0.111 4.111 17 C -0.103 4.103 18 C -0.015 4.015 19 C -0.520 4.520 20 H 0.071 0.929 21 C 0.064 3.936 22 N -0.905 5.905 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.265 1.265 27 O -0.131 6.131 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.016 0.984 43 H 0.012 0.988 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.882 20.620 18.854 33.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.262 6.262 3 C 0.400 3.600 4 O -0.376 6.376 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.226 4.226 8 C -0.015 4.015 9 C 0.107 3.893 10 H 0.140 0.860 11 C -0.227 4.227 12 O -0.267 6.267 13 C 0.308 3.692 14 O -0.390 6.390 15 C -0.149 4.149 16 C -0.149 4.149 17 C -0.140 4.140 18 C -0.053 4.053 19 C -0.558 4.558 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.544 5.544 23 Si 0.707 3.293 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.189 1.189 27 O -0.026 6.026 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.187 0.813 32 H 0.184 0.816 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.805 20.641 18.818 33.124 hybrid contribution 0.811 0.589 0.123 1.010 sum -16.994 21.230 18.941 33.140 Atomic orbital electron populations 1.23406 0.75006 1.04433 1.02909 1.86691 1.24236 1.31478 1.83751 1.19144 0.85407 0.82269 0.73217 1.90956 1.64324 1.35913 1.46440 1.20760 0.88087 0.86264 1.16483 1.21987 0.91990 0.99001 0.98944 1.21613 0.98210 0.93538 1.09255 1.22621 0.83439 0.93500 1.01921 1.21142 0.90948 0.85640 0.91578 0.86036 1.22255 1.03870 1.03126 0.93424 1.86705 1.38684 1.45052 1.56270 1.24308 0.81758 0.84587 0.78596 1.90670 1.27971 1.59432 1.60881 1.21626 1.02504 0.93295 0.97501 1.21621 0.93111 1.00094 1.00052 1.21478 1.00315 0.95036 0.97198 1.19576 0.92717 0.96959 0.96001 1.21167 0.95892 1.13220 1.25557 0.91037 1.25053 0.99171 0.94690 0.94732 1.69923 1.29935 1.24209 1.30315 0.86769 0.84245 0.80544 0.77694 1.20319 1.21441 1.18950 1.84168 1.14880 1.34277 1.69236 0.91469 0.91388 0.87413 0.81340 0.81572 0.89937 0.90725 0.90188 0.87453 0.87521 0.91479 0.91452 0.92537 0.92522 0.96578 0.97007 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.57 101.05 1.07 1.27 16 2 O -0.35 -3.28 10.58 -42.47 -0.45 -3.73 16 3 C 0.55 5.74 7.93 34.05 0.27 6.01 16 4 O -0.49 -5.62 16.66 -19.35 -0.32 -5.94 16 5 C -0.07 -0.66 7.18 -36.84 -0.26 -0.92 16 6 C -0.10 -0.81 10.62 -39.38 -0.42 -1.23 16 7 C -0.21 -1.54 10.76 -39.90 -0.43 -1.97 16 8 C 0.04 0.36 6.21 -35.40 -0.22 0.14 16 9 C 0.16 1.50 3.03 -27.88 -0.08 1.41 16 10 H 0.12 1.05 7.15 -51.93 -0.37 0.68 16 11 C -0.17 -1.28 9.53 37.16 0.35 -0.92 16 12 O -0.35 -4.01 9.86 -41.43 -0.41 -4.42 16 13 C 0.46 5.86 7.93 36.00 0.29 6.14 16 14 O -0.50 -7.45 15.20 -18.75 -0.29 -7.74 16 15 C -0.11 -1.34 5.81 -27.88 -0.16 -1.51 16 16 C -0.11 -1.72 4.50 -26.73 -0.12 -1.84 16 17 C -0.10 -1.92 5.15 -26.73 -0.14 -2.06 16 18 C -0.02 -0.36 4.04 -27.89 -0.11 -0.47 16 19 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 20 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 21 C 0.06 1.89 5.47 -17.81 -0.10 1.80 16 22 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 23 Si 0.88 21.96 27.47 -169.99 -4.67 17.30 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 27 O -0.13 -1.43 10.67 -0.80 -0.01 -1.44 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 39 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 43 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -34.61 385.49 -6.60 -41.22 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -6.64 Total: -4.42 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.40 Total: -9.35 kcal Atomic # 7 Polarization: -28.06 SS G_CDS: 0.77 Total: -27.28 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.47 Total: -23.26 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.61 -6.60 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.608 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds