Wall clock time and date at job start Tue Mar 31 2020 15:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34897 * 116.99748 * 2 1 4 4 O 1.21613 * 120.00537 * 0.02562 * 3 2 1 5 5 C 1.46477 * 119.99631 * 179.97438 * 3 2 1 6 6 C 1.36646 * 125.99339 * 180.02562 * 5 3 2 7 7 C 1.40302 * 106.70095 * 180.26559 * 6 5 3 8 8 C 1.35173 * 107.12666 * 359.60845 * 7 6 5 9 9 C 1.50702 * 125.60998 * 180.17719 * 8 7 6 10 10 H 1.09007 * 109.46999 * 340.28075 * 9 8 7 11 11 C 1.53002 * 109.46829 * 100.27469 * 9 8 7 12 12 O 1.45200 * 109.47420 * 220.27726 * 9 8 7 13 13 C 1.34228 * 117.00055 * 150.00030 * 12 9 8 14 14 O 1.20831 * 120.00061 * 0.02562 * 13 12 9 15 15 C 1.50694 * 120.00059 * 180.02562 * 13 12 9 16 16 C 1.53004 * 109.47113 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47086 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47322 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47349 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00440 * 359.97438 * 19 18 17 21 21 C 1.37883 * 120.00021 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99850 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00167 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46878 * 89.99954 * 23 21 19 25 25 H 1.48494 * 109.47224 * 209.99939 * 23 21 19 26 26 H 1.48501 * 109.46847 * 330.00587 * 23 21 19 27 27 O 1.33906 * 108.77985 * 0.39863 * 8 7 6 28 28 H 1.09001 * 109.46785 * 299.99309 * 1 2 3 29 29 H 1.09000 * 109.47067 * 59.99413 * 1 2 3 30 30 H 1.08995 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08002 * 126.64661 * 359.97438 * 6 5 3 32 32 H 1.07998 * 126.43730 * 179.72393 * 7 6 5 33 33 H 1.08990 * 109.47472 * 300.00589 * 11 9 8 34 34 H 1.09007 * 109.46835 * 60.00506 * 11 9 8 35 35 H 1.09007 * 109.47259 * 179.97438 * 11 9 8 36 36 H 1.09000 * 109.47367 * 299.99981 * 15 13 12 37 37 H 1.08998 * 109.47228 * 60.00229 * 15 13 12 38 38 H 1.08999 * 109.47292 * 299.99516 * 16 15 13 39 39 H 1.08998 * 109.47094 * 59.99892 * 16 15 13 40 40 H 1.09005 * 109.46842 * 299.99514 * 17 16 15 41 41 H 1.08998 * 109.47345 * 59.99920 * 17 16 15 42 42 H 1.09006 * 109.46951 * 300.00298 * 18 17 16 43 43 H 1.09003 * 109.47341 * 59.99350 * 18 17 16 44 44 H 0.97001 * 119.99740 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4021 2.2219 0.0005 5 6 3.5271 1.2786 0.0006 6 6 4.2713 2.4247 0.0011 7 6 5.6179 2.0311 -0.0047 8 6 5.6376 0.6795 0.0003 9 6 6.8755 -0.1801 0.0006 10 1 7.7249 0.4061 -0.3503 11 6 7.1509 -0.6769 1.4213 12 8 6.6753 -1.3173 -0.8796 13 6 7.7636 -1.8185 -1.4847 14 8 8.8477 -1.3237 -1.2851 15 6 7.6334 -2.9984 -2.4130 16 6 9.0119 -3.3680 -2.9645 17 6 8.8796 -4.5656 -3.9075 18 6 10.2581 -4.9356 -4.4585 19 6 10.1279 -6.1155 -5.3869 20 1 9.1590 -6.5576 -5.5657 21 6 11.2459 -6.6307 -6.0080 22 7 11.1322 -7.6601 -6.8186 23 14 12.9219 -5.8656 -5.6994 24 1 13.5644 -6.5329 -4.5387 25 1 13.7739 -6.0377 -6.9033 26 1 12.7596 -4.4181 -5.4105 27 8 4.3763 0.2300 0.0001 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8955 3.4372 0.0008 32 1 6.4774 2.6850 -0.0101 33 1 7.3011 0.1767 2.0821 34 1 6.3014 -1.2631 1.7722 35 1 8.0460 -1.2991 1.4215 36 1 7.2217 -3.8470 -1.8667 37 1 6.9691 -2.7403 -3.2377 38 1 9.4241 -2.5197 -3.5109 39 1 9.6760 -3.6263 -2.1396 40 1 8.4673 -5.4141 -3.3615 41 1 8.2157 -4.3069 -4.7324 42 1 10.6710 -4.0871 -5.0043 43 1 10.9218 -5.1943 -3.6335 44 1 11.9188 -8.0228 -7.2553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805697877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:34 Heat of formation + Delta-G solvation = -191.099499 kcal Electronic energy + Delta-G solvation = -26090.014743 eV Core-core repulsion = 21973.489040 eV Total energy + Delta-G solvation = -4116.525703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.01126 -41.71245 -41.35376 -38.15435 -37.75910 -36.65751 -34.73138 -34.55992 -33.76919 -31.96165 -30.73445 -28.56574 -28.00476 -25.85043 -24.53493 -23.38543 -22.74577 -21.93135 -21.58601 -21.30459 -19.68391 -18.91979 -18.65000 -18.39542 -18.03046 -17.89157 -17.51448 -16.91909 -16.34955 -16.14514 -15.93569 -15.18595 -14.92659 -14.78984 -14.43218 -14.39426 -14.31682 -14.26979 -14.12682 -13.79858 -13.73543 -13.50065 -13.20019 -13.11738 -12.87298 -12.56997 -12.34957 -12.12212 -12.11685 -11.99028 -11.95510 -11.74776 -11.70180 -11.37707 -11.31075 -11.24716 -11.22520 -10.74287 -9.91908 -8.27839 -6.31175 -0.45608 0.90515 1.07996 1.14660 1.36797 1.38488 1.50861 1.56090 1.67473 1.79454 2.37595 3.07638 3.15372 3.57228 3.67620 3.71047 3.83782 3.93171 3.96960 4.10824 4.20258 4.29563 4.33689 4.38475 4.45702 4.60963 4.62887 4.65371 4.66831 4.74949 4.76397 4.83304 5.03302 5.05042 5.10516 5.11697 5.18484 5.21345 5.33720 5.61165 5.64201 5.66659 5.70205 6.31253 6.40195 6.64928 6.77446 7.33526 8.88756 Molecular weight = 324.15amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.001895 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.068350 B =14774.269871 C =15705.210343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.555 3.445 4 O -0.507 6.507 5 C -0.090 4.090 6 C -0.091 4.091 7 C -0.194 4.194 8 C 0.025 3.975 9 C 0.158 3.842 10 H 0.129 0.871 11 C -0.166 4.166 12 O -0.355 6.355 13 C 0.471 3.529 14 O -0.528 6.528 15 C -0.108 4.108 16 C -0.100 4.100 17 C -0.096 4.096 18 C -0.017 4.017 19 C -0.531 4.531 20 H 0.035 0.965 21 C 0.001 3.999 22 N -0.952 5.952 23 Si 0.950 3.050 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.248 1.248 27 O -0.152 6.152 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.133 0.867 31 H 0.188 0.812 32 H 0.197 0.803 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.017 0.983 43 H 0.016 0.984 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.424 22.580 20.234 34.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.401 3.599 4 O -0.398 6.398 5 C -0.140 4.140 6 C -0.110 4.110 7 C -0.212 4.212 8 C -0.028 4.028 9 C 0.103 3.897 10 H 0.147 0.853 11 C -0.223 4.223 12 O -0.272 6.272 13 C 0.316 3.684 14 O -0.417 6.417 15 C -0.145 4.145 16 C -0.138 4.138 17 C -0.133 4.133 18 C -0.054 4.054 19 C -0.569 4.569 20 H 0.053 0.947 21 C -0.196 4.196 22 N -0.593 5.593 23 Si 0.773 3.227 24 H -0.192 1.192 25 H -0.210 1.210 26 H -0.172 1.172 27 O -0.047 6.047 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.151 0.849 31 H 0.205 0.795 32 H 0.214 0.786 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.379 22.604 20.215 34.952 hybrid contribution 0.549 -0.057 -0.310 0.632 sum -16.830 22.547 19.906 34.465 Atomic orbital electron populations 1.23712 0.73192 1.06260 1.03323 1.86680 1.26174 1.31204 1.83444 1.19259 0.85691 0.82253 0.72724 1.90931 1.64800 1.36387 1.47688 1.20958 0.88128 0.86846 1.18081 1.22334 0.92118 0.99329 0.97265 1.21982 0.98819 0.93065 1.07361 1.22808 0.82963 0.94274 1.02761 1.21397 0.91260 0.85078 0.91953 0.85310 1.22255 1.03309 1.03886 0.92834 1.86675 1.38165 1.45854 1.56517 1.24227 0.81519 0.84355 0.78290 1.90662 1.28852 1.60308 1.61854 1.21529 1.00678 0.94039 0.98283 1.21391 0.95198 0.98166 0.99056 1.21337 0.97368 0.96694 0.97943 1.19576 0.95862 0.94834 0.95163 1.21561 0.94471 1.14556 1.26307 0.94654 1.26046 1.03829 0.95216 0.94501 1.70075 1.31339 1.26048 1.31825 0.85660 0.78693 0.80401 0.77912 1.19192 1.21018 1.17197 1.84131 1.15580 1.35028 1.69995 0.90909 0.91164 0.84937 0.79504 0.78592 0.87700 0.91100 0.90817 0.85557 0.85852 0.92023 0.91797 0.92300 0.92430 0.96486 0.96523 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 113.37 1.20 1.49 16 2 O -0.36 -6.74 10.58 -56.73 -0.60 -7.34 16 3 C 0.55 11.40 7.93 69.97 0.55 11.95 16 4 O -0.51 -11.59 16.66 19.47 0.32 -11.27 16 5 C -0.09 -1.75 7.18 24.05 0.17 -1.58 16 6 C -0.09 -1.31 10.62 22.40 0.24 -1.07 16 7 C -0.19 -2.40 10.76 22.07 0.24 -2.17 16 8 C 0.02 0.42 6.21 24.98 0.16 0.58 16 9 C 0.16 2.64 3.03 29.85 0.09 2.73 16 10 H 0.13 1.97 7.15 -2.38 -0.02 1.95 16 11 C -0.17 -2.22 9.53 71.98 0.69 -1.53 16 12 O -0.35 -7.59 9.86 -49.31 -0.49 -8.08 16 13 C 0.47 11.04 7.93 71.23 0.56 11.61 16 14 O -0.53 -14.77 15.20 21.95 0.33 -14.44 16 15 C -0.11 -2.36 5.81 29.85 0.17 -2.19 16 16 C -0.10 -2.91 4.50 30.60 0.14 -2.77 16 17 C -0.10 -3.48 5.15 30.59 0.16 -3.32 16 18 C -0.02 -0.79 4.04 29.85 0.12 -0.67 16 19 C -0.53 -30.74 9.66 25.60 0.25 -30.49 16 20 H 0.04 2.23 7.99 -2.91 -0.02 2.20 16 21 C 0.00 0.03 5.47 84.65 0.46 0.49 16 22 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 23 Si 0.95 44.92 27.47 68.60 1.88 46.81 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 26 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 27 O -0.15 -3.21 10.67 0.59 0.01 -3.20 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 32 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 39 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 40 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.02 0.78 7.20 -2.38 -0.02 0.76 16 43 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -75.62 385.49 7.90 -67.72 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 0.94 Total: 6.69 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 5.20 Total: -16.96 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.30 Total: -59.92 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -0.42 Total: -44.33 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.81 kcal Total: -75.62 7.90 -67.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.378 kcal (2) G-P(sol) polarization free energy of solvation -75.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds