Wall clock time and date at job start Tue Mar 31 2020 15:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47085 * 2 1 4 4 N 1.46500 * 109.47262 * 120.00128 * 2 1 3 5 5 C 1.34770 * 120.00255 * 275.00570 * 4 2 1 6 6 O 1.21587 * 120.00072 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00238 * 180.02562 * 5 4 2 8 8 C 1.46495 * 119.99814 * 179.97438 * 7 5 4 9 9 C 1.53041 * 109.46087 * 274.74479 * 8 7 5 10 10 C 1.53194 * 109.31412 * 178.60581 * 9 8 7 11 11 N 1.46917 * 108.76480 * 54.65445 * 10 9 8 12 12 C 1.36945 * 120.62890 * 126.36292 * 11 10 9 13 13 H 1.07995 * 120.00030 * 331.85807 * 12 11 10 14 14 C 1.38814 * 119.99901 * 151.85458 * 12 11 10 15 15 N 1.31619 * 119.99879 * 343.07714 * 14 12 11 16 16 Si 1.86801 * 119.99814 * 163.07270 * 14 12 11 17 17 H 1.48499 * 109.46908 * 60.00101 * 16 14 12 18 18 H 1.48501 * 109.47098 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47325 * 300.00305 * 16 14 12 20 20 C 1.46928 * 118.74274 * 306.38462 * 11 10 9 21 21 C 1.53046 * 109.46109 * 154.69241 * 8 7 5 22 22 C 1.50706 * 109.47172 * 240.00487 * 2 1 3 23 23 C 1.33630 * 126.03996 * 99.71807 * 22 2 1 24 24 N 1.31780 * 114.49864 * 179.78991 * 23 22 2 25 25 C 1.29019 * 117.12698 * 0.51801 * 24 23 22 26 26 S 1.70977 * 110.16709 * 359.71368 * 25 24 23 27 27 H 1.08999 * 109.47388 * 299.99798 * 1 2 3 28 28 H 1.08999 * 109.47105 * 59.99833 * 1 2 3 29 29 H 1.08998 * 109.47166 * 179.97438 * 1 2 3 30 30 H 0.97007 * 119.99759 * 94.99380 * 4 2 1 31 31 H 0.96996 * 119.99379 * 359.71537 * 7 5 4 32 32 H 1.08998 * 109.46665 * 34.72179 * 8 7 5 33 33 H 1.09001 * 109.49928 * 298.56956 * 9 8 7 34 34 H 1.09002 * 109.49367 * 58.66494 * 9 8 7 35 35 H 1.09001 * 109.59376 * 294.86863 * 10 9 8 36 36 H 1.09003 * 109.70175 * 174.50965 * 10 9 8 37 37 H 0.97004 * 119.99383 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.58508 * 293.82317 * 20 11 10 39 39 H 1.08999 * 109.70444 * 173.46388 * 20 11 10 40 40 H 1.09003 * 109.49652 * 301.33644 * 21 8 7 41 41 H 1.09002 * 109.49407 * 61.39857 * 21 8 7 42 42 H 1.08006 * 122.74939 * 359.97098 * 23 22 2 43 43 H 1.08005 * 124.92190 * 179.75217 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8582 1.1614 2.4117 7 7 2.5968 -0.6537 3.4574 8 6 2.7371 0.0773 4.7192 9 6 4.0970 0.7784 4.7538 10 6 4.2260 1.5699 6.0591 11 7 3.9871 0.6610 7.1884 12 6 4.9007 0.5538 8.2030 13 1 5.9465 0.7415 8.0100 14 6 4.4823 0.2038 9.4795 15 7 3.2103 0.2984 9.8042 16 14 5.7247 -0.4014 10.7363 17 1 6.7459 0.6513 10.9694 18 1 5.0291 -0.7080 12.0120 19 1 6.3867 -1.6290 10.2266 20 6 2.7498 -0.1310 7.2085 21 6 2.6372 -0.9031 5.8902 22 6 2.0324 -0.7103 -1.2306 23 6 2.4664 -0.1281 -2.3523 24 7 2.8589 -0.9691 -3.2879 25 6 2.7705 -2.2284 -3.0216 26 16 2.1441 -2.4554 -1.4470 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2490 -1.6319 1.1525 31 1 2.8240 -1.5957 3.4147 32 1 1.9434 0.8201 4.7989 33 1 4.8916 0.0342 4.6994 34 1 4.1769 1.4592 3.9063 35 1 3.4890 2.3729 6.0740 36 1 5.2280 1.9921 6.1353 37 1 2.9180 0.0535 10.6961 38 1 1.8924 0.5333 7.3172 39 1 2.7762 -0.8330 8.0419 40 1 1.6779 -1.4193 5.8517 41 1 3.4453 -1.6317 5.8246 42 1 2.4960 0.9439 -2.4805 43 1 3.0521 -3.0241 -3.6955 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892879668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:37 Heat of formation + Delta-G solvation = 36.545667 kcal Electronic energy + Delta-G solvation = -24899.026043 eV Core-core repulsion = 21299.710149 eV Total energy + Delta-G solvation = -3599.315895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 4.68 seconds Orbital eigenvalues (eV) -40.36384 -39.81638 -37.65951 -35.90579 -34.35014 -32.47157 -31.40334 -30.06314 -29.46855 -28.90943 -25.95230 -25.01651 -23.19890 -22.23107 -21.75346 -21.01588 -20.28939 -19.41059 -18.73370 -18.07729 -16.80811 -16.18605 -15.84929 -15.37681 -15.01309 -14.81920 -14.51310 -14.33507 -14.21921 -13.76898 -13.64188 -13.54411 -13.26890 -12.95795 -12.57383 -12.42854 -12.28479 -12.01982 -11.55234 -11.44427 -11.10864 -10.85810 -10.71297 -10.50323 -10.27659 -10.19308 -10.03827 -10.00734 -9.77850 -9.72318 -9.54898 -9.45786 -9.25176 -8.63974 -8.44020 -6.67889 -5.79328 -3.21431 0.23935 0.86942 1.28126 2.36948 2.73798 3.30001 3.38402 3.44045 3.45197 3.90197 4.23165 4.28280 4.49736 4.80446 4.86892 4.96856 5.13791 5.33687 5.39116 5.42406 5.51187 5.60221 5.62157 5.69411 5.90108 5.92125 6.08993 6.29270 6.29418 6.35507 6.48928 6.57876 6.61260 6.80641 6.86267 6.98741 7.07348 7.25227 7.32292 7.62063 7.79348 8.07059 8.45049 8.68619 9.21160 9.84382 10.41531 11.29630 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.002281 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.378023 B =12272.943434 C =12488.917656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.241 3.759 3 H 0.110 0.890 4 N -0.749 5.749 5 C 0.705 3.295 6 O -0.587 6.587 7 N -0.738 5.738 8 C 0.169 3.831 9 C -0.139 4.139 10 C 0.148 3.852 11 N -0.593 5.593 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.904 5.904 16 Si 0.903 3.097 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.284 1.284 20 C 0.175 3.825 21 C -0.146 4.146 22 C -0.224 4.224 23 C 0.044 3.956 24 N -0.468 5.468 25 C 0.018 3.982 26 S 0.127 5.873 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.391 0.609 31 H 0.391 0.609 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.021 0.979 36 H 0.055 0.945 37 H 0.254 0.746 38 H 0.021 0.979 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.179 0.821 43 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.648 -7.836 -23.852 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.128 0.872 4 N -0.406 5.406 5 C 0.405 3.595 6 O -0.464 6.464 7 N -0.391 5.391 8 C 0.065 3.935 9 C -0.180 4.180 10 C 0.021 3.979 11 N -0.315 5.315 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.733 3.267 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.048 3.952 21 C -0.186 4.186 22 C -0.346 4.346 23 C -0.107 4.107 24 N -0.181 5.181 25 C -0.279 4.279 26 S 0.379 5.621 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.225 0.775 31 H 0.224 0.776 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.196 0.804 43 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.985 -7.474 -23.550 25.205 hybrid contribution 0.896 -0.479 0.341 1.072 sum -4.089 -7.953 -23.209 24.872 Atomic orbital electron populations 1.22246 0.93739 1.02549 1.03357 1.18985 0.93894 0.95938 0.77845 0.87231 1.45336 1.72992 1.13325 1.08977 1.15954 0.78239 0.85167 0.80148 1.90927 1.57086 1.14102 1.84309 1.45563 1.70215 1.13537 1.09735 1.20934 0.98248 0.94141 0.80179 1.22394 0.96442 0.99733 0.99403 1.20875 0.98948 0.91602 0.86502 1.44085 1.21346 1.44511 1.21599 1.19151 0.88628 1.43096 0.87325 0.91709 1.25054 0.96111 1.01771 0.96732 1.70018 1.14268 1.50754 1.19752 0.86363 0.80676 0.79055 0.80632 1.20873 1.21646 1.21081 1.20737 0.87859 0.93896 0.92697 1.22549 1.00361 0.98452 0.97259 1.26265 1.10243 0.96052 1.02052 1.21798 0.99355 1.01370 0.88220 1.66347 1.17550 1.01670 1.32538 1.28452 1.03371 0.97192 0.98904 1.84025 1.58787 1.04814 1.14427 0.90666 0.91301 0.92373 0.77482 0.77618 0.89976 0.92473 0.92713 0.96152 0.92603 0.93552 0.96079 0.89041 0.92776 0.92240 0.80379 0.78300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.47 37.16 0.35 -1.04 16 2 C 0.24 2.28 3.03 -69.08 -0.21 2.07 16 3 H 0.11 1.18 7.57 -51.93 -0.39 0.79 16 4 N -0.75 -7.80 5.07 -59.81 -0.30 -8.11 16 5 C 0.70 10.14 8.50 -86.92 -0.74 9.40 16 6 O -0.59 -10.74 15.66 5.29 0.08 -10.66 16 7 N -0.74 -10.20 5.08 -58.64 -0.30 -10.50 16 8 C 0.17 2.92 2.42 -67.89 -0.16 2.75 16 9 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 10 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 11 N -0.59 -14.77 2.99 -172.32 -0.52 -15.29 16 12 C -0.25 -6.88 9.58 -15.05 -0.14 -7.03 16 13 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 14 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 15 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 16 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 21 C -0.15 -2.64 5.55 -26.61 -0.15 -2.79 16 22 C -0.22 -1.84 5.51 -35.92 -0.20 -2.04 16 23 C 0.04 0.38 11.24 -19.19 -0.22 0.16 16 24 N -0.47 -4.35 10.54 -15.75 -0.17 -4.52 16 25 C 0.02 0.13 12.23 51.58 0.63 0.76 16 26 S 0.13 0.81 22.29 -107.50 -2.40 -1.58 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.39 3.24 7.76 -40.82 -0.32 2.92 16 31 H 0.39 4.31 8.62 -40.82 -0.35 3.96 16 32 H 0.08 1.61 7.57 -51.93 -0.39 1.22 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 37 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.18 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.20 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -32.62 364.75 -10.00 -42.62 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.38 Total: 4.70 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.12 Total: 6.73 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -0.66 Total: -63.77 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.40 Total: -1.58 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.62 -10.00 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892879668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.169 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.68 seconds