Wall clock time and date at job start Tue Mar 31 2020 15:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47085 * 2 1 4 4 N 1.46500 * 109.47262 * 120.00128 * 2 1 3 5 5 C 1.34770 * 120.00255 * 275.00570 * 4 2 1 6 6 O 1.21587 * 120.00072 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00238 * 180.02562 * 5 4 2 8 8 C 1.46495 * 119.99814 * 179.97438 * 7 5 4 9 9 C 1.53041 * 109.46087 * 274.74479 * 8 7 5 10 10 C 1.53194 * 109.31412 * 178.60581 * 9 8 7 11 11 N 1.46917 * 108.76480 * 54.65445 * 10 9 8 12 12 C 1.36945 * 120.62890 * 126.36292 * 11 10 9 13 13 H 1.07995 * 120.00030 * 331.85807 * 12 11 10 14 14 C 1.38814 * 119.99901 * 151.85458 * 12 11 10 15 15 N 1.31619 * 119.99879 * 343.07714 * 14 12 11 16 16 Si 1.86801 * 119.99814 * 163.07270 * 14 12 11 17 17 H 1.48499 * 109.46908 * 60.00101 * 16 14 12 18 18 H 1.48501 * 109.47098 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47325 * 300.00305 * 16 14 12 20 20 C 1.46928 * 118.74274 * 306.38462 * 11 10 9 21 21 C 1.53046 * 109.46109 * 154.69241 * 8 7 5 22 22 C 1.50706 * 109.47172 * 240.00487 * 2 1 3 23 23 C 1.33630 * 126.03996 * 99.71807 * 22 2 1 24 24 N 1.31780 * 114.49864 * 179.78991 * 23 22 2 25 25 C 1.29019 * 117.12698 * 0.51801 * 24 23 22 26 26 S 1.70977 * 110.16709 * 359.71368 * 25 24 23 27 27 H 1.08999 * 109.47388 * 299.99798 * 1 2 3 28 28 H 1.08999 * 109.47105 * 59.99833 * 1 2 3 29 29 H 1.08998 * 109.47166 * 179.97438 * 1 2 3 30 30 H 0.97007 * 119.99759 * 94.99380 * 4 2 1 31 31 H 0.96996 * 119.99379 * 359.71537 * 7 5 4 32 32 H 1.08998 * 109.46665 * 34.72179 * 8 7 5 33 33 H 1.09001 * 109.49928 * 298.56956 * 9 8 7 34 34 H 1.09002 * 109.49367 * 58.66494 * 9 8 7 35 35 H 1.09001 * 109.59376 * 294.86863 * 10 9 8 36 36 H 1.09003 * 109.70175 * 174.50965 * 10 9 8 37 37 H 0.97004 * 119.99383 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.58508 * 293.82317 * 20 11 10 39 39 H 1.08999 * 109.70444 * 173.46388 * 20 11 10 40 40 H 1.09003 * 109.49652 * 301.33644 * 21 8 7 41 41 H 1.09002 * 109.49407 * 61.39857 * 21 8 7 42 42 H 1.08006 * 122.74939 * 359.97098 * 23 22 2 43 43 H 1.08005 * 124.92190 * 179.75217 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8582 1.1614 2.4117 7 7 2.5968 -0.6537 3.4574 8 6 2.7371 0.0773 4.7192 9 6 4.0970 0.7784 4.7538 10 6 4.2260 1.5699 6.0591 11 7 3.9871 0.6610 7.1884 12 6 4.9007 0.5538 8.2030 13 1 5.9465 0.7415 8.0100 14 6 4.4823 0.2038 9.4795 15 7 3.2103 0.2984 9.8042 16 14 5.7247 -0.4014 10.7363 17 1 6.7459 0.6513 10.9694 18 1 5.0291 -0.7080 12.0120 19 1 6.3867 -1.6290 10.2266 20 6 2.7498 -0.1310 7.2085 21 6 2.6372 -0.9031 5.8902 22 6 2.0324 -0.7103 -1.2306 23 6 2.4664 -0.1281 -2.3523 24 7 2.8589 -0.9691 -3.2879 25 6 2.7705 -2.2284 -3.0216 26 16 2.1441 -2.4554 -1.4470 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2490 -1.6319 1.1525 31 1 2.8240 -1.5957 3.4147 32 1 1.9434 0.8201 4.7989 33 1 4.8916 0.0342 4.6994 34 1 4.1769 1.4592 3.9063 35 1 3.4890 2.3729 6.0740 36 1 5.2280 1.9921 6.1353 37 1 2.9180 0.0535 10.6961 38 1 1.8924 0.5333 7.3172 39 1 2.7762 -0.8330 8.0419 40 1 1.6779 -1.4193 5.8517 41 1 3.4453 -1.6317 5.8246 42 1 2.4960 0.9439 -2.4805 43 1 3.0521 -3.0241 -3.6955 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892879668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:35 Heat of formation + Delta-G solvation = 13.906061 kcal Electronic energy + Delta-G solvation = -24900.007770 eV Core-core repulsion = 21299.710149 eV Total energy + Delta-G solvation = -3600.297621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37222 -40.58910 -39.18415 -36.96626 -35.87569 -34.05562 -32.65100 -31.65815 -30.87802 -29.82533 -26.94325 -26.46897 -24.36066 -23.85832 -23.14561 -21.93048 -21.23691 -20.94075 -19.56482 -19.14414 -18.53428 -17.35024 -16.78931 -16.56390 -16.45787 -15.93046 -15.58826 -15.42452 -15.33275 -15.14364 -14.88134 -14.74245 -14.50223 -14.33130 -14.04651 -13.84889 -13.20813 -13.07685 -12.97692 -12.64229 -12.56891 -12.53556 -12.24114 -12.22412 -12.02349 -11.85948 -11.55337 -11.39520 -11.23563 -10.68476 -10.54358 -10.45169 -10.25862 -9.95550 -9.79156 -8.69782 -7.86927 -5.32586 -0.32126 0.33009 0.73003 1.49577 1.51011 1.58149 1.58879 1.88206 2.15029 2.52921 3.20138 3.30651 3.36401 3.64159 3.68019 3.91663 4.06943 4.13613 4.23081 4.36096 4.37520 4.47748 4.52770 4.66529 4.69654 4.81339 4.83864 4.88958 5.03784 5.07895 5.12038 5.17428 5.20642 5.31062 5.41830 5.48411 5.59940 5.65472 5.71285 5.95897 6.39984 6.69923 7.06071 7.15524 7.57244 7.85052 8.37993 9.20058 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.002281 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.378023 B =12272.943434 C =12488.917656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.243 3.757 3 H 0.092 0.908 4 N -0.732 5.732 5 C 0.705 3.295 6 O -0.628 6.628 7 N -0.726 5.726 8 C 0.182 3.818 9 C -0.123 4.123 10 C 0.145 3.855 11 N -0.609 5.609 12 C -0.265 4.265 13 H 0.067 0.933 14 C -0.049 4.049 15 N -0.935 5.935 16 Si 0.969 3.031 17 H -0.278 1.278 18 H -0.294 1.294 19 H -0.275 1.275 20 C 0.178 3.822 21 C -0.127 4.127 22 C -0.240 4.240 23 C 0.037 3.963 24 N -0.501 5.501 25 C 0.021 3.979 26 S 0.168 5.832 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.405 0.595 31 H 0.409 0.591 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.007 0.993 36 H 0.056 0.944 37 H 0.251 0.749 38 H -0.005 1.005 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.184 0.816 43 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.944 -10.084 -25.603 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.136 3.864 3 H 0.110 0.890 4 N -0.389 5.389 5 C 0.405 3.595 6 O -0.508 6.508 7 N -0.380 5.380 8 C 0.076 3.924 9 C -0.164 4.164 10 C 0.019 3.981 11 N -0.332 5.332 12 C -0.395 4.395 13 H 0.084 0.916 14 C -0.245 4.245 15 N -0.581 5.581 16 Si 0.797 3.203 17 H -0.204 1.204 18 H -0.220 1.220 19 H -0.201 1.201 20 C 0.052 3.948 21 C -0.167 4.167 22 C -0.362 4.362 23 C -0.114 4.114 24 N -0.215 5.215 25 C -0.276 4.276 26 S 0.421 5.579 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.241 0.759 31 H 0.245 0.755 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.013 0.987 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.201 0.799 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.271 -9.780 -25.359 27.513 hybrid contribution 0.659 0.232 0.805 1.066 sum -3.612 -9.549 -24.554 26.592 Atomic orbital electron populations 1.22179 0.93086 1.03108 1.02902 1.18930 0.94339 0.95276 0.77872 0.88974 1.45161 1.71895 1.13825 1.08010 1.16038 0.77895 0.84691 0.80907 1.90911 1.58746 1.16147 1.85039 1.45145 1.70227 1.14183 1.08469 1.20497 0.96760 0.93610 0.81488 1.22184 0.97339 0.99554 0.97305 1.20959 0.98521 0.91437 0.87215 1.44343 1.21354 1.45581 1.21969 1.19481 0.89219 1.42630 0.88140 0.91561 1.25819 0.97812 1.02284 0.98567 1.70180 1.16053 1.51952 1.19923 0.85321 0.78386 0.78674 0.77920 1.20365 1.22048 1.20117 1.20569 0.86443 0.93091 0.94688 1.22256 1.02091 0.97920 0.94435 1.26074 1.11258 0.97552 1.01326 1.21964 0.99166 1.01923 0.88377 1.66398 1.19097 1.02722 1.33273 1.29036 1.01777 0.97197 0.99567 1.83858 1.57829 1.02553 1.13710 0.92915 0.89960 0.91232 0.75873 0.75473 0.92416 0.91639 0.92374 0.97500 0.92520 0.93995 0.98727 0.91807 0.90432 0.91133 0.79948 0.75382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.47 71.98 0.68 -1.82 16 2 C 0.24 4.33 3.03 44.25 0.13 4.46 16 3 H 0.09 1.99 7.57 -2.39 -0.02 1.97 16 4 N -0.73 -13.91 5.07 -461.42 -2.34 -16.25 16 5 C 0.70 19.36 8.50 179.06 1.52 20.88 16 6 O -0.63 -22.95 15.66 -3.99 -0.06 -23.01 16 7 N -0.73 -18.60 5.08 -457.69 -2.33 -20.92 16 8 C 0.18 6.11 2.42 45.02 0.11 6.22 16 9 C -0.12 -4.43 5.65 30.67 0.17 -4.25 16 10 C 0.14 6.32 6.52 86.36 0.56 6.88 16 11 N -0.61 -30.74 2.99 -699.11 -2.09 -32.83 16 12 C -0.26 -14.52 9.58 84.03 0.81 -13.72 16 13 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 14 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 15 N -0.94 -55.00 11.19 21.65 0.24 -54.76 16 16 Si 0.97 44.34 29.59 68.60 2.03 46.37 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 20 C 0.18 8.46 5.30 86.36 0.46 8.92 16 21 C -0.13 -4.44 5.55 30.67 0.17 -4.27 16 22 C -0.24 -3.53 5.51 24.64 0.14 -3.39 16 23 C 0.04 0.60 11.24 83.65 0.94 1.54 16 24 N -0.50 -8.45 10.54 -203.75 -2.15 -10.60 16 25 C 0.02 0.23 12.23 130.66 1.60 1.83 16 26 S 0.17 1.66 22.29 -56.49 -1.26 0.40 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.41 5.54 7.76 -92.70 -0.72 4.82 16 31 H 0.41 7.69 8.62 -92.71 -0.80 6.89 16 32 H 0.06 2.27 7.57 -2.39 -0.02 2.25 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 37 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 38 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 39 H 0.06 3.38 6.06 -2.39 -0.01 3.37 16 40 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.23 0.84 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -71.73 364.75 -0.73 -72.46 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -0.48 Total: 18.18 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 7.71 Total: 20.97 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -8.66 Total: -135.36 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.06 Total: -23.01 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -1.26 Total: 0.40 kcal Total: -71.73 -0.73 -72.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892879668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.363 kcal (2) G-P(sol) polarization free energy of solvation -71.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds