Wall clock time and date at job start Tue Mar 31 2020 14:52:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09000 * 110.78437 * 2 1
4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3
5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1
6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2
7 7 O 1.21280 * 119.99909 * 0.02562 * 6 5 4
8 8 C 1.50702 * 120.00100 * 179.97438 * 6 5 4
9 9 C 1.50702 * 109.46927 * 180.02562 * 8 6 5
10 10 C 1.38414 * 120.02641 * 269.72704 * 9 8 6
11 11 F 1.35102 * 120.01107 * 359.97438 * 10 9 8
12 12 C 1.38474 * 119.97651 * 179.74534 * 10 9 8
13 13 C 1.38215 * 120.02344 * 0.50904 * 12 10 9
14 14 C 1.38210 * 120.04729 * 359.76735 * 13 12 10
15 15 C 1.38421 * 120.02192 * 90.00266 * 9 8 6
16 16 F 1.35094 * 120.01577 * 359.97438 * 15 9 8
17 17 C 1.47426 * 108.70517 * 358.86539 * 5 4 2
18 18 C 1.54914 * 104.82992 * 24.12623 * 17 5 4
19 19 H 1.09000 * 111.00339 * 81.07133 * 18 17 5
20 20 N 1.46505 * 111.00202 * 204.91694 * 18 17 5
21 21 C 1.36935 * 120.00217 * 273.54861 * 20 18 17
22 22 H 1.08006 * 119.99642 * 359.97438 * 21 20 18
23 23 C 1.38808 * 120.00007 * 180.02562 * 21 20 18
24 24 N 1.31620 * 120.00356 * 359.97438 * 23 21 20
25 25 Si 1.86801 * 119.99913 * 180.02562 * 23 21 20
26 26 H 1.48500 * 109.47230 * 359.97438 * 25 23 21
27 27 H 1.48491 * 109.47384 * 120.00033 * 25 23 21
28 28 H 1.48504 * 109.46904 * 239.99911 * 25 23 21
29 29 H 1.08999 * 109.47083 * 181.78943 * 1 2 3
30 30 H 1.09002 * 109.47293 * 301.78952 * 1 2 3
31 31 H 1.09000 * 109.47062 * 61.79046 * 1 2 3
32 32 H 1.09002 * 109.88192 * 100.02756 * 4 2 1
33 33 H 1.09000 * 109.88128 * 339.01609 * 4 2 1
34 34 H 1.08996 * 109.47275 * 300.00392 * 8 6 5
35 35 H 1.09002 * 109.46941 * 60.00490 * 8 6 5
36 36 H 1.07998 * 119.98959 * 180.22924 * 12 10 9
37 37 H 1.07995 * 119.97382 * 179.74681 * 13 12 10
38 38 H 1.08000 * 119.98172 * 179.97438 * 14 13 12
39 39 H 1.08999 * 110.36956 * 142.96999 * 17 5 4
40 40 H 1.09001 * 110.36709 * 265.18192 * 17 5 4
41 41 H 0.96998 * 119.99743 * 93.55096 * 20 18 17
42 42 H 0.96989 * 120.00348 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9167 1.0191 0.0000
4 6 2.0760 -0.7913 -1.2072
5 7 3.2438 -1.5535 -0.7414
6 6 3.9877 -2.3885 -1.4937
7 8 3.7119 -2.5604 -2.6621
8 6 5.1630 -3.1076 -0.8831
9 6 5.8210 -3.9718 -1.9278
10 6 5.4115 -5.2826 -2.1006
11 9 4.4220 -5.7883 -1.3322
12 6 6.0132 -6.0742 -3.0644
13 6 7.0295 -5.5589 -3.8466
14 6 7.4431 -4.2518 -3.6711
15 6 6.8392 -3.4569 -2.7115
16 9 7.2433 -2.1792 -2.5406
17 6 3.4656 -1.2541 0.6849
18 6 2.0831 -0.7972 1.2139
19 1 1.4480 -1.6542 1.4382
20 7 2.2294 0.0667 2.3880
21 6 2.3264 -0.4860 3.6370
22 1 2.2947 -1.5590 3.7567
23 6 2.4645 0.3326 4.7495
24 7 2.5027 1.6401 4.6038
25 14 2.5976 -0.4215 6.4533
26 1 2.5290 -1.9011 6.3465
27 1 3.8905 -0.0286 7.0690
28 1 1.4784 0.0657 7.2990
29 1 -0.3633 -1.0272 0.0321
30 1 -0.3634 0.5414 0.8735
31 1 -0.3633 0.4858 -0.9056
32 1 2.3741 -0.1026 -1.9977
33 1 1.3121 -1.4741 -1.5791
34 1 5.8817 -2.3780 -0.5104
35 1 4.8185 -3.7322 -0.0589
36 1 5.6914 -7.0959 -3.2018
37 1 7.5010 -6.1781 -4.5953
38 1 8.2376 -3.8504 -4.2827
39 1 3.7975 -2.1479 1.2131
40 1 4.1987 -0.4550 0.7952
41 1 2.2575 1.0303 2.2805
42 1 2.5996 2.2121 5.3810
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000939040767.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:52:49
Heat of formation + Delta-G solvation = -88.961577 kcal
Electronic energy + Delta-G solvation = -27364.720787 eV
Core-core repulsion = 23173.829353 eV
Total energy + Delta-G solvation = -4190.891435 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.139 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-49.16393 -49.15997 -40.02047 -38.94236 -37.51843 -34.10540 -33.28469 -32.40291
-30.75357 -30.52242 -28.35571 -27.52343 -25.81919 -24.02229 -23.09769 -22.54553
-21.44929 -19.94117 -19.12622 -18.31431 -17.57547 -17.22206 -17.04352 -16.32755
-15.98444 -15.86681 -15.75831 -15.42046 -15.07370 -14.72775 -14.59352 -14.09193
-13.81089 -13.54240 -13.14011 -13.01132 -12.98643 -12.97598 -12.75428 -12.36207
-12.18452 -11.94311 -11.74197 -11.67213 -11.56958 -11.14226 -11.03496 -10.76709
-10.63332 -10.25231 -9.94987 -9.91399 -9.74427 -9.11080 -9.03121 -8.97194
-8.37555 -7.12406 -5.88687 -3.19665 0.72127 0.75095 2.76457 2.99040
3.31215 3.36892 3.43503 3.45115 3.68498 4.18148 4.20043 4.41431
4.47445 4.53713 4.67371 4.88264 5.05075 5.09898 5.16966 5.23106
5.30164 5.50676 5.56859 5.61684 5.65958 5.67691 5.74025 5.79041
5.81413 5.87999 5.90642 5.98908 6.18150 6.22413 6.32817 6.43619
6.48907 6.52477 6.58850 6.84081 7.60500 7.73966 8.27644 8.31006
9.40965 9.94264 10.29368 11.33250
Molecular weight = 324.14amu
Principal moments of inertia in cm(-1)
A = 0.015053 B = 0.003130 C = 0.002907
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1859.667533 B = 8944.549908 C = 9628.242491
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.113 4.113
3 H 0.085 0.915
4 C 0.117 3.883
5 N -0.611 5.611
6 C 0.532 3.468
7 O -0.548 6.548
8 C -0.101 4.101
9 C -0.132 4.132
10 C 0.142 3.858
11 F -0.127 7.127
12 C -0.165 4.165
13 C -0.064 4.064
14 C -0.165 4.165
15 C 0.142 3.858
16 F -0.128 7.128
17 C 0.069 3.931
18 C 0.178 3.822
19 H 0.066 0.934
20 N -0.710 5.710
21 C -0.248 4.248
22 H 0.073 0.927
23 C -0.008 4.008
24 N -0.929 5.929
25 Si 0.907 3.093
26 H -0.279 1.279
27 H -0.291 1.291
28 H -0.291 1.291
29 H 0.053 0.947
30 H 0.067 0.933
31 H 0.049 0.951
32 H 0.062 0.938
33 H 0.065 0.935
34 H 0.112 0.888
35 H 0.112 0.888
36 H 0.142 0.858
37 H 0.143 0.857
38 H 0.142 0.858
39 H 0.070 0.930
40 H 0.072 0.928
41 H 0.387 0.613
42 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.326 -12.189 -16.041 21.437
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.133 4.133
3 H 0.103 0.897
4 C -0.006 4.006
5 N -0.344 5.344
6 C 0.320 3.680
7 O -0.427 6.427
8 C -0.141 4.141
9 C -0.134 4.134
10 C 0.122 3.878
11 F -0.106 7.106
12 C -0.184 4.184
13 C -0.082 4.082
14 C -0.184 4.184
15 C 0.123 3.877
16 F -0.106 7.106
17 C -0.056 4.056
18 C 0.065 3.935
19 H 0.083 0.917
20 N -0.350 5.350
21 C -0.379 4.379
22 H 0.091 0.909
23 C -0.204 4.204
24 N -0.576 5.576
25 Si 0.738 3.262
26 H -0.204 1.204
27 H -0.218 1.218
28 H -0.218 1.218
29 H 0.072 0.928
30 H 0.086 0.914
31 H 0.068 0.932
32 H 0.080 0.920
33 H 0.084 0.916
34 H 0.130 0.870
35 H 0.130 0.870
36 H 0.160 0.840
37 H 0.161 0.839
38 H 0.160 0.840
39 H 0.088 0.912
40 H 0.090 0.910
41 H 0.222 0.778
42 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 7.187 -12.375 -16.469 21.818
hybrid contribution 0.108 0.184 1.220 1.239
sum 7.296 -12.191 -15.249 20.841
Atomic orbital electron populations
1.21654 0.93860 1.01814 1.01794 1.22521 0.96484 0.99797 0.94480
0.89697 1.21967 0.87385 0.94302 0.96903 1.48479 1.29864 1.43557
1.12550 1.19898 0.83188 0.79018 0.85931 1.90679 1.71036 1.64568
1.16373 1.20494 0.96915 0.99255 0.97394 1.19353 0.98889 0.94160
1.00996 1.17168 0.87677 0.91187 0.91719 1.91534 1.58710 1.87014
1.73323 1.21167 0.99003 1.01203 0.96987 1.20817 0.95132 0.94355
0.97942 1.21166 1.02843 0.94850 0.99514 1.17168 0.94835 0.79510
0.96232 1.91531 1.89229 1.35450 1.94382 1.23581 1.02779 1.00904
0.78371 1.21408 0.91665 0.93727 0.86671 0.91654 1.42302 1.86830
1.05180 1.00730 1.19276 1.43046 0.91939 0.83631 0.90916 1.24764
1.02309 0.95341 0.98026 1.69663 1.56493 1.02109 1.29323 0.86126
0.77304 0.78245 0.84531 1.20438 1.21761 1.21776 0.92820 0.91388
0.93163 0.91996 0.91635 0.87026 0.86996 0.83988 0.83947 0.83995
0.91184 0.90958 0.77821 0.93363
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.89 9.14 37.15 0.34 -1.56 16
2 C -0.11 -1.77 3.19 -88.65 -0.28 -2.05 16
3 H 0.08 1.36 8.00 -51.93 -0.42 0.95 16
4 C 0.12 1.80 6.46 -3.07 -0.02 1.78 16
5 N -0.61 -9.95 3.33 -170.52 -0.57 -10.52 16
6 C 0.53 8.85 7.84 -10.98 -0.09 8.76 16
7 O -0.55 -10.59 16.36 5.56 0.09 -10.50 16
8 C -0.10 -1.38 4.49 -29.03 -0.13 -1.51 16
9 C -0.13 -1.73 4.38 -104.49 -0.46 -2.19 16
10 C 0.14 1.74 7.24 -39.43 -0.29 1.45 16
11 F -0.13 -1.69 16.47 2.25 0.04 -1.65 16
12 C -0.16 -1.52 10.03 -39.50 -0.40 -1.91 16
13 C -0.06 -0.50 10.04 -39.60 -0.40 -0.90 16
14 C -0.16 -1.52 10.02 -39.50 -0.40 -1.92 16
15 C 0.14 1.74 7.24 -39.43 -0.29 1.45 16
16 F -0.13 -1.70 16.48 2.25 0.04 -1.66 16
17 C 0.07 1.17 6.39 -2.53 -0.02 1.16 16
18 C 0.18 3.28 3.14 -65.64 -0.21 3.07 16
19 H 0.07 1.24 8.03 -51.93 -0.42 0.83 16
20 N -0.71 -16.38 5.28 -51.21 -0.27 -16.65 16
21 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16
22 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16
23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16
24 N -0.93 -26.70 13.06 55.49 0.72 -25.98 16
25 Si 0.91 21.43 29.55 -169.99 -5.02 16.40 16
26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16
27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16
29 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16
30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
33 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16
34 H 0.11 1.41 7.64 -51.93 -0.40 1.01 16
35 H 0.11 1.41 7.34 -51.93 -0.38 1.03 16
36 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16
37 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16
38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16
39 H 0.07 1.13 7.48 -51.93 -0.39 0.74 16
40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
41 H 0.39 9.55 7.72 -40.82 -0.31 9.24 16
42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
LS Contribution 361.95 15.07 5.45 5.45
Total: -1.00 -30.97 361.95 -8.03 -39.00
By element:
Atomic # 1 Polarization: 12.98 SS G_CDS: -5.65 Total: 7.33 kcal
Atomic # 6 Polarization: 1.63 SS G_CDS: -2.87 Total: -1.24 kcal
Atomic # 7 Polarization: -53.03 SS G_CDS: -0.11 Total: -53.14 kcal
Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal
Atomic # 9 Polarization: -3.39 SS G_CDS: 0.07 Total: -3.31 kcal
Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -30.97 -8.03 -39.00 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000939040767.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.963 kcal
(2) G-P(sol) polarization free energy of solvation -30.968 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.931 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.962 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds